Author Correction: The genetic prehistory of the Baltic Sea region (Nature Communications (2018) DOI: 10.1038/s41467-018-02825-9);The genetic prehistory of the Baltic Sea region

Nature Communications

Volumn 9, Issue 1, 2018, Pages

  Mittnik, Alissa ^a,b   Wang, Chuan Chao ^a,c   Pfrengle, Saskia ^b   Daubaras, Mantas ^d   Zariņa, Gunita ^e   Hallgren, Fredrik ^f   Allmäe, Raili ^g   Khartanovich, Valery ^h   Moiseyev, Vyacheslav ^h   Tõrv, Mari ⁱ   Furtwängler, Anja ^b   Andrades Valtueña, Aida ^a   Feldman, Michal ^a   Economou, Christos ^j   Oinonen, Markku ^k   Vasks, Andrejs ^e   Balanovska, Elena ^l   Reich, David ^m,n,o   Jankauskas, Rimantas ^p   Haak, Wolfgang ^a,q   Schiffels, Stephan ^a   Krause, Johannes ^a,b   more..

^a Max Planck Institute for the Science of Human History ^*  (Germany)

^b UNIVERSITY OF TÜBINGEN   (Germany)

^c XIAMEN UNIVERSITY   (China)

^d LITHUANIAN INSTITUTE OF HISTORY   (Lithuania)

^e UNIVERSITY OF LATVIA   (Latvia)

^f Cultural Heritage Foundation   (Sweden)

^g TALLINN UNIVERSITY   (Estonia)

^h RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

ⁱ UNIVERSITY OF TARTU   (Estonia)

^j STOCKHOLM UNIVERSITY   (Sweden)

^k UNIVERSITY OF HELSINKI   (Finland)

^l RESEARCH CENTRE FOR MEDICAL GENETICS   (Russian Federation)

^m HARVARD MEDICAL SCHOOL   (United States)

ⁿ BROAD INSTITUTE OF MIT AND HARVARD   (United States)

^o HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^p VILNIUS UNIVERSITY   (Lithuania)

^q UNIVERSITY OF ADELAIDE   (Australia)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ANCESTRY; DNA; GENE FLOW; GENETIC ANALYSIS; HUNTER-GATHERER; MESOLITHIC; NEOLITHIC; PASTORALISM; PREHISTORIC; STEPPE;

AGRICULTURAL WORKER; ARTICLE; BALTIC SEA; ECONOMIC ASPECT; GENOME; HUMAN; MESOLITHIC; NEOLITHIC; NORTHERN EUROPEAN; SCANDINAVIA; STEPPE; AGRICULTURE; BALTIC STATES; CAUCASIAN; FOSSIL; GENE FLOW; GENETICS; HISTORY; HUMAN GENOME; MIGRATION; POPULATION DYNAMICS;

ANATOLIA; ATLANTIC OCEAN; BALTIC SEA; CENTRAL EUROPE; NORTHERN EUROPE; SCANDINAVIA; SOUTHERN EUROPE; TURKEY;

AGRICULTURE; BALTIC STATES; EUROPEAN CONTINENTAL ANCESTRY GROUP; FOSSILS; GENE FLOW; GENOME, HUMAN; HISTORY, ANCIENT; HUMANS; POPULATION DYNAMICS; SCANDINAVIAN AND NORDIC COUNTRIES; TRANSIENTS AND MIGRANTS;

EID: 85041302620     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/s41467-018-03872-y     Document Type: Erratum

References (62)

1. Lazaridis, I. et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature 513, 409-413 (2014).
2. Haak, W. et al. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature 522, 207-211 (2015).
3. Allentoft, M. E. et al. Population genomics of Bronze Age Eurasia. Nature 522, 167-172 (2015).
4. Mathieson, I. et al. Genome-wide patterns of selection in 230 ancient Eurasians. Nature 528, 499-503 (2015).
5. Fu, Q. et al. The genetic history of Ice Age Europe. Nature 534, 200-205 (2016).
6. Lazaridis, I. et al. Genomic insights into the origin of farming in the ancient Near East. Nature 536, 419-424 (2016).
7. Rasmussen, S. et al. Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago. Cell 163, 571-582 (2015).
8. Andrades Valtueña, A. et al. The Stone Age plague and its persistence in Eurasia. Curr. Biol. 27, 3683-3691.e8 (2017).
9. Jochim, M. The Upper Paleolithic, in European Prehistory: A Survey, 2nd edn (ed. Milisauskas, S.) Ch. 5 (Springer, New York, 2011).
10. Sanchez-Quinto, F. et al. Genomic affinities of two 7,000-year-old Iberian hunter-gatherers. Curr. Biol. 22, 1494-1499 (2012).
11. Gamba, C. et al. Genome flux and stasis in a five millennium transect of European prehistory. Nat. Commun. 5, 5257 (2014).
12. Raghavan, M. et al. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature 505, 87-91 (2014).
13. Sørensen, M. et al. The first Eastern migrations of people and knowledge into Scandinavia: evidence from studies of MesolithicTechnology, 9th-8th Millennium BC. Nor. Archaeol. Rev. 46, 19-56 (2013).
14. Kriiska, A. Stone Age Settlement And Economic Processes In Estonian Coastal Area And Islands. Ph.D. thesis, University of Helsinki (2001).
15. Nordqvist, K. & Kriiska, A. Towards Neolithisation. The Mesolithic-Neolithic transition in the central area of the eastern part of the Baltic Sea, in The Dabki Site in Pomerania and the Neolithisation of the North European Lowlands (c. 5000-3000 calBC) Vol. 8 (eds Hartz, S. et al.) 537-556 (Verlag Marie Leidorf GmbH, Rahden, Germany, 2015).
16. Hofmanova, Z. et al. Early farmers from across Europe directly descended from Neolithic Aegeans. Proc. Natl Acad. Sci. USA 113, 6886-6891 (2016).
17. Olalde, I. et al. A common genetic origin for early farmers from mediterranean cardial and central european LBK cultures. Mol. Biol. Evol. 32, 3132-3142 (2015).
18. Skoglund, P. et al. Origins and genetic legacy of Neolithic farmers and huntergatherers in Europe. Science 336, 466-469 (2012).
19. Skoglund, P. et al. Genomic diversity and admixture differs for Stone-Age Scandinavian foragers and farmers. Science 344, 747-750 (2014).
20. Malmstrom, H. et al. Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process. Philos. Trans. R Soc. Lond. B Biol. Sci. 370, 20130373 (2015).
21. Jones, E. R. et al. The Neolithic Transition in the Baltic was not driven by admixture with early European farmers. Curr. Biol. 27, 576-582 (2017).
22. Saag, L. et al. Extensive farming in Estonia started through a sex-biased migration from the Steppe. Curr. Biol. 27, 2185-2193.e6 (2017).
23. Malmstrom, H. et al. Ancient DNA reveals lack of continuity between neolithic hunter-gatherers and contemporary Scandinavians. Curr. Biol. 19, 1758-1762 (2009).
24. Fu, Q. et al. DNA analysis of an early modern human from Tianyuan Cave, China. Proc. Natl Acad. Sci. USA 110, 2223-2227 (2013).
25. Der Sarkissian, C. et al. Ancient DNA reveals prehistoric gene-flow from Siberia in the complex human population history of North East Europe. PLoS Genet. 9, e1003296 (2013).
26. Der Sarkissian, C. et al. Mitochondrial genome sequencing in Mesolithic North East Europe unearths a new sub-clade within the broadly distributed human haplogroup C1. PLoS ONE 9, e87612 (2014).
27. Gonzalez-Fortes, G. et al. Paleogenomic evidence for multi-generational mixing between Neolithic farmers and Mesolithic hunter-gatherers in the Lower Danube basin. Curr. Biol. 27, 1801-1810.e10 (2017).
28. Posth, C. et al. Pleistocene mitochondrial genomes suggest a single major dispersal of Non-Africans and a Late Glacial Population Turnover in Europe. Curr. Biol. 26, 827-833 (2016).
29. Oinonen, M., Vasks, A., Zarina, G. & Lavento, M. Stones, bones, and Hillfort: radiocarbon dating of Kivutkalns Bronze-Working Center. Radiocarbon 55, 1252-1264 (2013).
30. Larsson, Å. & Graner, G. in Uniting Sea II. Stone Age Societies in the Baltic Sea Region, Vol. OPIA 51 (eds Larson, Å. M. & Papmehl-Dufay, L.) 213-247 (Department of Archaeology and Ancient History, Uppsala University, 2010).
31. Lindgren, S. & Neumann, J. Crossings of ice-bound sea surfaces in history. Clim. Change 4, 71-97 (1982).
32. Larsson, Å. M. Making and Breaking Bodies and Pots. Material and Ritual Practices in South Sweden in the Third Millennium BC. Ph.D. thesis, Uppsala University (2009).
33. Cramp, L. J. E. et al. Neolithic dairy farming at the extreme of agriculture in northern Europe. Proc. R Soc. B Biol. Sci. 281, 20140819 (2014).
34. Ilumae, A. M. et al. Human Y chromosome Haplogroup N: a non-trivial timeresolved phylogeography that cuts across language families. Am. J. Hum. Genet. 99, 163-173 (2016).
35. Günther, T. et al. Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation. PLoS Bio. 16, e2003703 (2018).
36. Hallgren, F. Early pottery among hunter-horticulturalists and huntergatherers in central Fenno-Scandinavia, in Early Farmers, Late Foragers, and Ceramic Traditions: On the Beginning of Pottery in the Near East and Europe (ed. Gheorghiu, D.) 215-238 (Cambridge Scholars Publishing, Cambridge, 2009).
37. Piezonka, H. Jäger, Fischer, Töpfer: Wildbeutergruppen mit früher Keramik in Nordosteuropa im 6. und 5. Jahrtausend v. Chr., Vol. 30 (Habelt, Bonn, 2015).
38. Gimbutas, M. Proto-Indo-European culture: the Kurgan culture during the fifth, fourth, and third millennia B.C., in Indo-European and The Indo-Europeans (eds Cardona, C. et al.) 155-198 (Univ. Pa. Press, Philadelphia, 1970).
39. Anthony, D. W. & Ringe, D. The Indo-European Homeland from linguistic and archaeological perspectives. Annu. Rev. Linguist. 1, 199-219 (2015).
40. Nichols, J. The Eurasian spread zone and the Indo-European dispersal, in Archaeology and Language II: Archaeological Data and Linguistic Hypotheses (eds Blench, R. & Spriggs, M.) 220-266 (Routledge, London, 1998).
41. Sjögren, K.-G., Price, T. D. & Kristiansen, K. Diet and Mobility in the Corded Ware of Central Europe. PLoS ONE 11, e0155083 (2016).
42. Brandt, G. et al. Ancient DNA reveals key stages in the formation of central European mitochondrial genetic diversity. Science 342, 257-261 (2013).
43. Günther, T. et al. Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques. Proc. Natl Acad. Sci. USA 112, 11917-11922 (2015).
44. Laitinen, V., Lahermo, P., Sistonen, P. & Savontaus, M. L. Y-chromosomal diversity suggests that Baltic males share common Finno-Ugric-speaking forefathers. Hum. Hered. 53, 68-78 (2002).
45. Rootsi, S. et al. A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe. Eur. J. Hum. Genet. 15, 204-211 (2007).
46. Dabney, J. et al. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc. Natl Acad. Sci. USA 110, 15758-15763 (2013).
47. Meyer, M. & Kircher, M. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb. Protoc. 2010, prot5448 (2010).
48. Kemp, B. M., Monroe, C., Judd, K. G., Reams, E. & Grier, C. Evaluation of methods that subdue the effects of polymerase chain reaction inhibitors in the study of ancient and degraded DNA. J. Archaeol. Sci. 42, 373-380 (2014).
49. Kircher, M., Sawyer, S. & Meyer, M. Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform. Nucleic Acids Res. 40, e3 (2012).
50. Maricic, T., Whitten, M. & Paabo, S. Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS ONE 5, e14004 (2010).
51. Mittnik, A., Wang, C.-C., Svoboda, J. & Krause, J. A molecular approach to the sexing of the triple burial at the Upper Paleolithic Site of Dolní Věstonice. PLoS ONE 11, e0163019 (2016).
52. Peltzer, A. et al. EAGER: efficient ancient genome reconstruction. Genome Biol. 17, 60 (2016).
53. Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
54. Andrews, R. M. et al. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat. Genet. 23, 147 (1999).
55. Renaud, G., Slon, V., Duggan, A. T. & Kelso, J. Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA. Genome Biol. 16, 224 (2015).
56. Sawyer, S., Krause, J., Guschanski, K., Savolainen, V. & Paabo, S. Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS ONE 7, e34131 (2012).
57. Rohland, N., Harney, E., Mallick, S., Nordenfelt, S. & Reich, D. Partial uracil-DNA-glycosylase treatment for screening of ancient DNA. Philos. Trans. R Soc. B Biol. Sci. 370, 20130624 (2015).
58. Kircher, M. Analysis of high-throughput ancient DNA sequencing data, in Ancient DNA: Methods and Protocols (eds B. Shapiro & Hofreiter, M.) 197-228 (Humana Press, New York, 2012).
59. Korneliussen, T. S., Albrechtsen, A. & Nielsen, R. ANGSD: Analysis of Next Generation Sequencing Data. BMC Bioinformatics 15, 356 (2014).
60. Monroy Kuhn, J. M., Jakobsson, M. & Günther, T. Estimating genetic kin relationships in prehistoric populations. bioRxiv. https://doi.org/10.1101/ 100297 (2017).
61. Jones, E. R. et al. Upper Palaeolithic genomes reveal deep roots of modern Eurasians. Nat. Commun. 6, 8912 (2015).
62. Reich, D., Price, A. L. & Patterson, N. Principal component analysis of genetic data. Nat. Genet. 40, 491-492 (2008).