A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe

European Journal of Human Genetics

Volumn 15, Issue 2, 2007, Pages 204-211

  Rootsi, Siiri ^a   Zhivotovsky, Lev A ^b   Baldovič, Marian ^a,b   Kayser, Manfred ^d   Kutuev, Ildus A ^a,e   Khusainova, Rita ^a,e   Bermisheva, Marina A ^a,e   Gubina, Marina ^a,f   Fedorova, Sardana A ^a,g,j   Ilumäe, Anne Mai ^a   Khusnutdinova, Elza K ^e   Voevoda, Mikhail I ^f   Osipova, Ludmila P ^f   Stoneking, Mark ^h   Lin, Alice A ⁱ   Ferak, Vladimir ^c   Parik, Jüri ^a   Kivisild, Toomas ^a   Underhill, Peter A ⁱ   Villems, Richard ^a  

^a UNIVERSITY OF TARTU   (Estonia)

^b VAVILOV INSTITUTE OF GENERAL GENETICS   (Russian Federation)

^c Faculty of Natural Sciences   (Slovakia)

^d ERASMUS MEDICAL CENTER   (Netherlands)

^e INSTITUTE OF BIOCHEMISTRY AND GENETICS   (Russian Federation)

^f INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

^g Russian Academy of Sciences   (Russian Federation)

^h MAX PLANCK INSTITUTE FOR EVOLUTIONARY ANTHROPOLOGY   (Germany)

ⁱ STANFORD UNIVERSITY   (United States)

^j Government of the Sakha Republic   (Russian Federation)

more..

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; CHINA; DNA FINGERPRINTING; EUROPE; HAPLOTYPE; HOLOCENE; HUMAN; MALE; PHYLOGEOGRAPHY; PLEISTOCENE; POPULATION GENETICS; PRIORITY JOURNAL; RUSSIAN FEDERATION; SOUTHEAST ASIA; Y CHROMOSOME;

ASIA, SOUTHEASTERN; CHROMOSOMES, HUMAN, Y; EUROPE, EASTERN; GENETICS, POPULATION; HAPLOTYPES; HUMANS; MALE; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 33846309247     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/sj.ejhg.5201748     Document Type: Article

References (53)

1. Jobling MA, Tyler-Amith C: The human Y chromosome: an evolutionary marker comes of age. Nat Rev Genet 2003; 4: 598-6123.
2. Underhill PA, Shen P, Lin AA et al: Y chromosome sequence variation and the history of human populations. Nat Genet 2000; 26: 358-361.
3. Hammer MF, Karafet TM, Redd AJ et al: Hierarchical patterns of global human Y-chromosome diversity. Mol Biol Evol 2001; 18: 1189-1203.
4. Y Chromosome Consortium: A nomenclature system for the tree of human Y-chromosomal binary haplogroups. Genome Res 2002; 12: 339-348.
5. Underhill PA, Passarino G, Lin AA et al: The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations. Ann Hum Genet 2001; 65: 43-62.
6. Cinnioglu C, King R, Kivisild T et al: Excavating Y-chromosome haplotype strata in Anatolia. Hum Genet 2004; 114: 127-148.
7. Su B, Jin L: NatiMes or immigrants: modern human origin in East Asia. Nat Rev 2000; 1: 126-133.
8. Wen B, Li H, Lu D et al: Genetic evidence supports demic diffusion of Han culture. Nature 2004; 431: 302-305.
9. Shi H, Dong YL, Wen B et al: Y-chromosome evidence of southern origin of the East Asian-specific haplogroup O3-M122. Am J Hum Genet 2005; 77: 408-419.
10. Sengupta S, Zhivotovsky LA, King R et al: Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of central asian pastoralists. Am J Hum Gen 2006; 78: 202-221.
11. Karafet TM, Osipova LP, Gubina MA, Posukh OL, Zegura SL, Hammer MF: High levels of Y-chromosome differentiation among native Siberian populations and the genetic signature of a boreal hunter-gatherer way of life. Hum Biol 2002; 74: 761-789.
12. Zerjal T, Dashnyam B, Pandya A et al: Genetic relationships of Asians and Northern Europeans, revealed by Y-chromosomal DNA analysis. Am J Hum Genet 1997; 60: 1174-1183.
13. Hurles ME, Sykes BC, Jobling MA, Forster P: The dual origin of the Malagasy in Island Southeast Asia and East Africa: Evidence from maternal and paternal lineages. Am J Hum Genet 2005; 76: 894-901.
14. Bandelt HJ, Macaulay V, Richards M: Median Networks: Speedy Construction and Greedy Reduction, One Simulation, and Two Case Studies from Human mtDNA. Mol Phylogenet Evol 2000; 16: 8-28.
15. Zhivotovsky LA, Underhill PA, Cinnioglu C et al: On the effective mutation rate at Y-chromosome STRs with application to human population divergence time. Am J Hum Genet 2004; 74: 50-61.
16. Dupuy BM, Stenersen M, Egeland T, Olaisen B: Y-chromosomal microsatellite mutation rates: Differences in mutation rate between and within loci. Hum Mutat 2004; 23: 117-124.
17. Tambets K, Rootsi S, Kivisild T et al: The western and eastern roots of the Saami - the story of genetic 'outliers' told by mtDNA and Y-chromosome. Am J Hum Genet 2004; 74: 661:682.
18. Hammer MF, Karafet TM, Park H et al: Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. J Hum Genet 2006; 51: 47-58.
19. Kayser M, Brauer S, Weiss G et al: Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea. Am J Hum Genet 2003; 72: 281-302.
20. Su B, Xiao J, Underhill P et al: Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last ice age. Am J Hum Genet 1999; 65: 1718-1724.
21. Tajima A, Pan IH, Fucharoen G et al: Three major lineages of Asian Y chromosomes: Implications for the peopling of east and southeast Asia. Hum Genet 2002; 110: 80-88.
22. Rootsi S, Magri C, Kivisild T et al: Phylogeography of Y-chromosome haplogroup I reveals distinct domains of prehistoric gene flow in Europe. Am J Hum Genet 2004; 75: 128-137.
23. Zhivotovsky LA, Underhill PA, Feldman MW: Difference between evolutionarily effective and germ-line mutation rate due to stochastically varying haplogroup size. Mol Biol Evol 2006; 23: 2268-2270.
24. Bergen AW, Wang CY, Tsai J et al: An Asian-Native American paternal lineage identified by RPS4Y resequencing and by microsatellite haplotyping. Ann Hum Genet 1999; 63: 63-80.
25. Karafet TM, Zegura SL, Posukh O et al: Ancestral Asian source(s) of new world Y-chromosome founder haplotypes. Am J Hum Genet 1999; 64: 817-831.
26. Lell JT, Sukernik RI, Starikovskaya YB et al: The dual origin and Siberian affinities of Native American Y chromosomes. Am J Hum Genet 2002; 70: 192-206.
27. Seielstad M, Yuldasheva N, Singh N et al: A novel Y-chromosome variant puts an upper limit on the timing of first entry into the Americas. Am J Hum Genet 2003; 73: 700-705.
28. Bortolini MC, Salzano FM, Thomas MG et al: Y-chromosome evidence for differing ancient demographic histories in the Americas. Am J Hum Genet 2003; 73: 524-539.
29. Zegura SL, Karafet TM, Zhivotovsky LA, Hammer MF: High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Mol Biol Evol 2004; 21: 164-175.
30. Semino O, Passarino G, Oefner PJ et al: The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: A Y chromosome perspective. Science 2000; 290: 1155-1159.
31. Zerjal T, Beckman L, Beckman G et al: Geographical, linguistic, and cultural influences on genetic diversity: Y-chromosomal distribution in Northern European populations. Mol Biol Evol 2001; 18: 1077-1087.
32. Rootsi S, Kivisild T, Tambets K et al: On the phylogeographic context of sex-specific genetic markers of Finno-Ugric populations; in Künnap A (ed): The roots of peoples and languages of Northern Eurasia II and III. Tartu: University of Tartu. Division of Uralic Languages/Societas Historiae Fenno-Ugricae, 2000, pp 148-164.
33. Rosser ZH, Zerjal T, Hurles ME et al: Y-chromosomal diversity in Europe is clinal and influenced primarily by geography, rather than by language. Am J Hum Genet 2000; 67: 1526-1543.
34. Villems R, Rootsi S, Tambets K et al: Archaeogenetics of Finno-Ugric speaking populations; in Julku K (ed):: The Roots of Peoples and Languages of Northern Eurasia IV. Oulu: Societas Historiae Fenno-Ugricae, 2002, pp 271-284.
35. Laitinen V, Lahermo P, Sistonen P, Savontaus ML: Y-chromosomal diversity suggests that Baltic males share common Finno-Ugric-speaking forefathers. Hum Hered 2002; 53: 68-78.
36. Lappalainen T, Koivumki S, Salmela E et al: Regional differences among the Finns: A Y-chromosomal perspective. Gene 2006; 376: 207-215.
37. Kasperavičiuté D, Kučinskas V, Stoneking M: Y chromosome and mitochondrial DNA variation in Lithuanians. Ann Hum Genet 2004; 68: 438-452.
38. Dupuy BM, Stenersen M, Lu TT, Olaisen B: Geographical heterogeneity of Y-chromosomal lineages in Norway. Forensic Sci Int 2005; Epub. December 6.
39. Karlsson AO, Wallerstrom T, Gotherstrom A, Holmlund G: Y-chromosome diversity in Sweden - A long-time perspective. Eur J Hum Genet 2006, May 24 (epub).
40. Pakendorf B, Morar B, Tarskaia LA et al: Y-chromosomal evidence for a strong reduction in male population size of Yakuts. Hum Genet 2002; 110: 198-200.
41. Kolga M, Toñurist I, Vaba L, Viikberg J: The Red Book of the Peoples of the Russian Empire. Tallinn, NGO Red Book, 2001.
42. Russian Population Census. 2002, www.perepis2002.ru.
43. Stepanov VA, Kharkov VN, Puzyrev VP: Evolution and phylogeography of human Y-chromosomal lineages (in Russian). Vestnik VOGiS 2006; 10: 57-73.
44. Zerjal T, Wells R, Yuldasheva N, Ruzibakiev R, Tyler-Smith C: A genetic landscape reshaped by recent events: Y-chromosomal insights into central Asia. Am J Hum Genet 2002; 71: 466-482.
45. Richards M, Macaulay V, Hickey E et al: Tracing European founder lineages in the Near Eastern mtDNA pool. Am J Hum Genet 2000; 67: 1251-1276.
46. Pliss L, Tambets K, Loogväli EL et al: Mitochondrial DNA Portrait of Latvians: Towards the Understanding of the Genetic Structure of Baltic-Speaking Populations. Ann Hum Genet 2005; 69: 1-20.
47. Finnila S, Lehtonen MS, Majamaa K: Phylogenetic network for European mtDNA. Am J Hum Genet 2001; 68: 1475-1484.
48. Torroni A, Sukernik RI, Schurr TG et al: MtDNA variation of aboriginal Siberians reveals distinct genetic affinities with Native Americans. Am J Hum Genet 1993; 53: 591-608.
49. Comas D, Plaza S, Wells RS, Yuldaseva N, Lao O, Calafell F, Bertranpetit J: Admixture, migrations, and dispersals in CentrEl Asia: evidence from maternal DNA lineages. Eur J Hum Genet 2004; 12: 495-504.
50. Bermisheva M, Tambets K, Villems R, Khusnutdinova E: Diversity of mitochondrial DNA haplotypes in ethnic populations of the Volga-Ural region of Russia. Mol Biol 2002; 36: 990-1001.
51. Yao YG, Kong QP, Bandelt HJ, Kivisild T, Zhang YP: Phylogeographic differentiation of mitochondrial DNA in Han Chinese. Am J Hum Genet 2002; 70: 635-651.
52. Kivisild T, Tolk HV, Parik J,Wang Y, Papiha SS, Bandelt HJ, Villems R: The emerging limbs and twigs of the East Asian mtDNA tree. Mol Biol Evol 2002; 19: 1737-1751.
53. Kong QP, Bandelt HJ, Sun C et al: Updating the East Asian mtDNA phylogeny: A prerequisite for the identification of pathogenic mutations. Hum Mol Genet 2006; 15: 2076-2086.