Fate of antibiotic resistance genes and mobile genetic elements during anaerobic co-digestion of Chinese medicinal herbal residues and swine manure

Bioresource Technology

Volumn 250, Issue , 2018, Pages 799-805

  Zhang, Li ^a   Gu, Jie ^a   Wang, Xiaojuan ^a   Zhang, Ranran ^a   Tuo, Xiaxia ^a   Guo, Aiyun ^a   Qiu, Ling ^a  

^a NORTHWEST A F UNIVERSITY   (China)

Author keywords

Anaerobic co digestion; Antibiotic resistance gene; Bacterial community; Chinese medicinal herbal residues; Mobile genetic element

Indexed keywords

ANTIBIOTICS; BACTERIA; DNA; FERTILIZERS; GENE TRANSFER; GENES; MANURES;

ANAEROBIC CO-DIGESTION; ANTIBIOTIC RESISTANCE GENES; BACTERIAL COMMUNITY; CHINESE MEDICINAL HERBAL RESIDUES; GENETIC ELEMENTS;

ANAEROBIC DIGESTION;

ABUNDANCE; ANAEROBIC DIGESTION; ANTIBIOTIC RESISTANCE; BACTERIUM; BIOGENIC MATERIAL; GENE TRANSFER; GENETIC ANALYSIS; HERB; MANURE; MICROBIAL COMMUNITY;

ANAEROBIC DIGESTION; ANTIBIOTIC RESISTANCE GENE; ARTICLE; CHINESE HERB; DFRA7 GENE; ENVIRONMENTAL FACTOR; ERMF GENE; FIRMICUTES; GENE; GENE IDENTIFICATION; HORIZONTAL GENE TRANSFER; MANURE; MICROBIAL COMMUNITY; MOBILE GENETIC ELEMENT; MOLECULAR GENETIC PHENOMENA AND FUNCTIONS; NONHUMAN; PIG; PRIORITY JOURNAL; PROTEOBACTERIA; QNRA GENE; SUL1 GENE; TETW GENE; TN916 GENE; ANIMAL; ANTIBIOTIC RESISTANCE; BACTERIAL GENE; CHEMISTRY; GENETICS; INTERSPERSED REPEAT;

BACTERIA (MICROORGANISMS); SUIDAE;

ANTIINFECTIVE AGENT; HERBACEOUS AGENT;

ANIMALS; ANTI-BACTERIAL AGENTS; DRUG RESISTANCE, MICROBIAL; DRUGS, CHINESE HERBAL; GENES, BACTERIAL; INTERSPERSED REPETITIVE SEQUENCES; MANURE; SWINE;

EID: 85037685311     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2017.10.100     Document Type: Article

References (49)

1. Berendonk, T.U., Célia, M., Manaia, C.M., Merlin, C., Fatta-Kassinos, D., Cytryn, E., Walsh, F., Bürgmann, H., Sørum, H., Norström, M., Pons, M.N., Kreuzinger, N., Huovinen, P., Stefani, S., Schwartz, T., Kisand, V., Baquero, F., Martinez, J.L., Tackling antibiotic resistance: the environmental framework. Nat. Rev. Microbiol. 13:5 (2015), 310–317.
2. Bosshard, P.P., Zbinden, R., Altwegg, M., Turicibacter sanguinis gen. nov., sp. nov., a novel anaerobic, gram-positive bacterium. Int. J. Syst. Evol. Microbiol. 52:4 (2002), 1263–1266.
3. Carnevali, P.B.M., Microbial Ecology, Biogeochemistry, and Signatures of Life at Low Temperature in Arctic Thermokarst Lake Sediments and High Sierra Snow Fields. 2015, University of Nevada, Reno.
4. Chan, B.C.L., Lau, C.B.S., Jolivalt, C., Lui, S.L., Ganem-Elbaz, C., Paris, J.M., Litaudon, M., Fung, P.K., Leung, C.P., Ip, M., Chinese medicinal herbs against antibiotic-resistant bacterial pathogens science against microbial pathogens: communicating. Curr. Res. Technol. Adv. 2 (2011), 773–781.
5. Chen, S., Niu, L., Zhang, Y., Saccharofermentans acetigenes gen. nov., sp. nov., an anaerobic bacterium isolated from sludge treating brewery wastewater. Int. J. Syst. Evol. Microbiol. 60:12 (2010), 2735–2738.
6. Cheng, W.X., Li, J.N., Wu, Y., Xu, L., Su, C., Qian, Y.Y., Zhu, Y.G., Chen, H., Behavior of antibiotics and antibiotic resistance genes in eco-agricultural system: a case study. J. Hazard. Mater. 304 (2016), 18–25.
7. Chin, L.W., Cheng, Y.W., Lin, S.S., Lai, Y.Y., Lin, L.Y., Chou, M.Y., Chou, M.C., Yang, C.C., Anti-herpes simplex virus effects of berberine from Coptidis rhizoma, a major component of a Chinese herbal medicine Ching-Wei-San. Arch. Virol. 155:12 (2010), 1933–1941.
8. Chu, L., Wang, J., Denitrification of groundwater using PHBV blends in packed bed reactors and the microbial diversity. Chemosphere 155 (2016), 463–470.
9. Diehl, D.L., LaPara, T.M., Effect of temperature on the fate of genes encoding tetracycline resistance and the integrase of class 1 integrons within anaerobic and aerobic digesters treating municipal wastewater solids. Environ. Sci. Technol. 44:23 (2010), 9128–9133.
10. Duan, M.L., Li, H.C., Gu, J., Tuo, X.X., Sun, W., Qian, X., Wang, X.J., Effects of biochar on reducing the abundance of oxytetracycline, antibiotic resistance genes, and human pathogenic bacteria in soil and lettuce. Environ. Pollut. 224 (2017), 787–795.
11. Fitamo, T., Treu, L., Boldrin, A., Sartori, C., Angelidaki, I., Scheutz, C., Microbial population dynamics in urban organic waste anaerobic co-digestion with mixed sludge during a change in feedstock composition and different hydraulic retention times. Water Res. 118 (2017), 261–271.
12. Fu, Q., Kobayashi, H., Kawaguchi, H., Vilcaez, J., Wakayama, T., Maeda, H., Electrochemical and phylogenetic analyses of current-generating microorganisms in a thermophilic microbial fuel cell. J. Biosci. Bioeng., 115(3), 2013, 268.
13. Gao, P., Gu, C.C., Wei, X., Li, X., Chen, H., Jia, H.Z., Liu, Z.H., Xue, G., Ma, C.Y., The role of zero valent iron on the fate of tetracycline resistance genes and class 1 integrons during thermophilic anaerobic co-digestion of waste sludge and kitchen waste. Water Res., 2016.
14. Ghosh, S., Ramsden, S.J., LaPara, T.M., The role of anaerobic digestion in controlling the release of tetracycline resistance genes and class 1 integrons from municipal wastewater treatment plants. Appl. Microbiol. Biotechnol. 84:4 (2009), 791–796.
15. Guo, F., Dong, Y., Dong, L., Jing, Y., An innovative example of herb residues recycling by gasification in a fluidized bed. Waste Manage. 33:4 (2013), 825–832.
16. Hu, Y.F., Yang, X., Qin, J.J., Lu, N., Cheng, G., Wu, N., Pan, Y.L., Li, J., Zhu, L.Y., Wang, X., Meng, Z.Q., Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota. Nat. Commun., 4, 2013, 2151.
17. Johnsen, B.O., Handal, N., Meisal, R., Bjørnholt, J.V., Gaustad, P., Leegaard, T.M., Erm gene distribution among norwegian bacteroides isolates and evaluation of phenotypic tests to detect inducible clindamycin resistance in bacteroides species. Anaerobe, 47, 2017, 226.
18. Kazuma, K., Takahashi, T., Sato, K., Takeuchi, H., Matsumoto, T., Okuno, T., Quinochalcones and flavonoids from fresh florets in different cultivars of Carthamus tinctorius L. Biosci. Biotech. Biochem. 64:8 (2000), 1588–1599.
19. Kishimoto, K., Matsui, K., Ozawa, R., Takabayashi, J., Analysis of defensive responses activated by volatile allo-ocimene treatment in Arabidopsis thaliana. Phytochemistry 67:14 (2006), 1520–1529.
20. Koyama, N., Kuribayashi, K., Seki, T., Kobayashi, K., Furuhata, Y., Suzuki, K., Arisaka, H., Nakano, T., Amino, Y., Ishii, K., Serotonin derivatives, major safflower (Carthamus tinctorius l.) seed antioxidants, inhibit low-density lipoprotein (ldl) oxidation and atherosclerosis in apolipoprotein e-deficient mice. J. Agric. Food. Chem. 54:14 (2006), 4970–4976.
21. Kumarasamy, N., Vallabhaneni, S., Flanigan, T.P., Mayer, K.H., Solomon, S., Clinical profile of hiv in India. Indian J. Med. Res. 121:4 (2003), 377–394.
22. Lin, Q., De Vrieze, J., Li, C.N., Li, J.Y., Li, J.B., Yao, M.J., Hedenec, P., Li, H., Li, T.T., Rui, J.P., Frouz, J., Li, X.Z., Temperature regulates deterministic processes and the succession of microbial interactions in anaerobic digestion process. Water Res. 123 (2017), 134–143.
23. Ma, Y., Wilson, C.A., Novak, J.T., Riffat, R., Aynur, S., Murthy, S., Pruden, A., Effect of various sludge digestion conditions on sulfonamide, macrolide, and tetracycline resistance genes and class I integrons. Environ. Sci. Technol. 45 (2011), 7855–7861.
24. Meng, F.J., Yang, S.G., Wang, X., Chen, T.T., Wang, X.L., Tang, X.Y., Shen, L., Reclamation of Chinese herb residues using probiotics and evaluation of their beneficial effect on pathogen infection. J. Infect. Public Heal, 2017.
25. Miller, J.H., Novak, J.T., Knocke, W.R., Pruden, A., Survival of antibiotic resistant bacteria and horizontal gene transfer control antibiotic resistance gene content in anaerobic digesters. Front. Microbiol., 7, 2016.
26. Mohammadi, N.S., Mafakheri, S., Abdali, N., Bárcena-Uribarri, I., Tauch, A., Benz, R., Identification and characterization of the channel-forming protein in the cell wall of Corynebacterium amycolatum. BBA-Biomembr. 1828:11 (2013), 2574–2582.
27. Pruden, A., Pei, R., Storteboom, H., Carlson, K.H., Antibiotic resistance genes as emerging contaminants: studies in northern Colorado. Environ. Sci. Technol. 40:23 (2006), 7445–7450.
28. Qian, X., Sun, W., Gu, J., Wang, X.J., Zhang, Y.J., Duan, M.L., Zhang, R.R., Reducing antibiotic resistance genes, integrons, and pathogens in dairy manure by continuous thermophilic composting. Bioresour. Technol. 220 (2016), 425–432.
29. Rizzo, L., Manaia, C., Merlin, C., Schwartz, T., Dagot, C., Ploy, M.C., Michael, L., Fatta-Kassinos, D., Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: a review. Sci. Total Environ. 447 (2013), 345–360.
30. Roosa, S., Wattiez, R., Prygiel, E., Lesven, L., Billon, G., Gillan, D.C., Bacterial metal resistance genes and metal bioavailability in contaminated sediments. Environ. Pollut. 189 (2014), 143–151.
31. Ros, M., de Souza Oliveira Filho, J., Murcia, M.D.P., Bustamante, M.A., Moral, R., Coll, M.D., Lopez Santisima-Trinidad, A.B., Pascual, J.A., Mesophilic anaerobic digestion of pig slurry and fruit and vegetable waste: dissection of the microbial community structure. J. Clean. Prod. 156 (2017), 757–765.
32. Stalder, T., Barraud, O., Casellas, M., Dagot, C., Ploy, M.C., Integron involvement in environmental spread of antibiotic resistance. Front. Microbiol., 3, 2012.
33. Su, J.Q., Wei, B., Ou-Yang, W.Y., Huang, F.Y., Zhao, Y., Xu, H.J., Zhu, Y.G., Antibiotic resistome and its association with bacterial communities during sewage sludge composting. Environ. Sci. Technol. 49:12 (2015), 7356–7363.
34. Sui, Q., Zhang, J., Chen, M., Tong, J., Wang, R., Wei, Y., Distribution of antibiotic resistance genes (ARGs) in anaerobic digestion and land application of swine wastewater. Environ. Pollut. 213 (2016), 751–759.
35. Sun, W., Qian, X., Gu, J., Wang, X.J., Zhang, L., Guo, A.Y., Mechanisms and effects of arsanilic acid on antibiotic resistance genes and microbial communities during pig manure digestion. Bioresour. Technol. 234 (2017), 217–223.
36. Takii, T., Kawashima, S., Chiba, T., Hayashi, H., Hayashi, M., Hiroma, H., Inukai, Y., Shibata, Y., Nagatsu, A., Sakakibara, J., Oomoto, Y., Hirose, K., Onozaki, K., Multiple mechanisms involved in the inhibition of proinflammatory cytokine production from human monocytes by N-(p-coumaroyl) serotonin and its derivatives. Int. Immunopharmacol. 3:2 (2003), 273–277.
37. Tian, T., Qiao, S., Li, X., Zhang, M., Zhou, J., Nano-graphene induced positive effects on methanogenesis in anaerobic digestion. Bioresour. Technol. 224 (2017), 41–47.
38. Tian, Z., Zhang, Y., Li, Y., Chi, Y., Yang, M., Rapid establishment of thermophilic anaerobic microbial community during the one-step startup of thermophilic anaerobic digestion from a mesophilic digester. Water Res. 69 (2015), 9–19.
39. Vanwonterghem, I., Jensen, P.D., Dennis, P.G., Hugenholtz, P., Rabaey, K., Tyson, G.W., Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters. ISME J., 8(10), 2014, 2015.
40. Wang, H., Sangwan, N., Li, H.Y., Su, J.Q., Oyang, W.Y., Zhang, Z.J., Gilbert, J.A., Zhu, Y.G., Ping, F., Zhang, H.L., The antibiotic resistome of swine manure is significantly altered by association with the Musca domestica larvae gut microbiome. ISME J. 11:1 (2017), 100–111.
41. Wang, X., Morrisnatschke, S.L., Lee, K.H., New developments in the chemistry and biology of the bioactive constituents of tanshen. Med. Res. Rev., 27(1), 2007, 133.
42. Wust, P.K., Horn, M.A., Drake, H.L., Clostridiaceae and enterobacteriaceae as active fermenters in earthworm gut content. ISME J., 5(1), 2011, 92.
43. Yang, J., Qiu, K., Development of high surface area mesoporous activated carbons from herb residues. Chem. Eng. J. 167:1 (2011), 148–154.
44. Zhang, H.L., Nagatsu, A., Watanabe, T., Okuyama, H., Antioxidative compounds isolated from safflower (Carthamus tinctorius L.) oil cake. Chem. Pharm. Bull. 45:12 (1997), 1910–1914.
45. Zhang, J., Li, W., Lee, J., Loh, K.C., Dai, Y., Tong, Y.W., Enhancement of biogas production in anaerobic co-digestion of food waste and waste activated sludge by biological co-pretreatment. Energy, 2017.
46. Zhang, L., Gu, J., Wang, X.J., Sun, W., Yin, Y.N., Sun, Y.X., Guo, A.Y., Tuo, X.X., Behavior of antibiotic resistance genes during co-composting of swine manure with Chinese medicinal herbal residues. Bioresour. Technol. 244 (2017), 252–260.
47. Zhang, T., Yang, Y., Pruden, A., Effect of temperature on removal of antibiotic resistance genes by anaerobic digestion of activated sludge revealed by metagenomic approach. Appl. Microbiol. Biotechnol. 99:18 (2015), 7771–7779.
48. Zhao, J., Lou, J., Mou, Y., Li, P., Wu, J., Zhou, L., Diterpenoid tanshinones and phenolic acids from cultured hairy roots of salvia miltiorrhiza bunge and their antimicrobial activities. Molecules 16:3 (2011), 2259–2267.
49. Zhou, Y., Selvam, A., Wong, J.W., Effect of Chinese medicinal herbal residues on microbial community succession and anti-pathogenic properties during co-composting with food waste. Bioresour. Technol. 217 (2016), 190–199.