Temperature regulates deterministic processes and the succession of microbial interactions in anaerobic digestion process

Water Research

Volumn 123, Issue , 2017, Pages 134-143

  Lin, Qiang ^a,b   De Vrieze, Jo ^c   Li, Chaonan ^a   Li, Jiaying ^a   Li, Jiabao ^a   Yao, Minjie ^a   Hedenec, Petr ^b   Li, Huan ^a   Li, Tongtong ^a   Rui, Junpeng ^a   Frouz, Jan ^b   Li, Xiangzhen ^a  

^a CHENGDU INSTITUTE OF BIOLOGY   (China)

^b INSTITUTE OF SOIL BIOLOGY   (Czech Republic)

^c GHENT UNIVERSITY   (Belgium)

Author keywords

Anaerobic digestion; Deterministic process; Microbial interactions; Modularity; Temperature gradient

Indexed keywords

GENE EXPRESSION; THERMAL GRADIENTS; TOPOLOGY;

ANAEROBIC DIGESTION PROCESS; DETERMINISTIC PROCESS; GENES EXPRESSION; MICRO-ORGANISMS; MICROBIAL INTERACTIONS; MODULARITY; NETWORK MODULARITY; PERFORMANCE; THREE-LEVEL; TOPOLOGICAL FEATURES;

ANAEROBIC DIGESTION;

METHANE; RNA 16S;

ANAEROBIC DIGESTION; GENE EXPRESSION; METHANE; MICROBIAL ACTIVITY; SUCCESSION; TEMPERATURE GRADIENT;

ANAEROBIC DIGESTION; ARTICLE; BACTEROIDACEAE; CLOSTRIDIUM; GENE EXPRESSION; LACTOBACILLACEAE; LACTOBACILLUS; METHANOBACTERIUM; METHANOBREVIBACTER; METHANOCULLEUS; METHANOFOLLIS; METHANOSARCINA; MICROBIAL COMMUNITY; NONHUMAN; ORGANISMAL INTERACTION; PREVOTELLA; PREVOTELLACEAE; PRIORITY JOURNAL; SYNTROPHOMONADACEAE; SYNTROPHOMONAS; TEMPERATURE SENSITIVITY; TEPIDIMICROBIUM; THERMOTOGACEAE; ANAEROBIC GROWTH; BIOREACTOR; TEMPERATURE;

ANAEROBIOSIS; BIOREACTORS; METHANE; MICROBIAL INTERACTIONS; TEMPERATURE;

EID: 85021305018     PISSN: 00431354     EISSN: 18792448     Source Type: Journal    
DOI: 10.1016/j.watres.2017.06.051     Document Type: Article

References (29)

1. Benjamini, Y., Krieger, A.M., Yekutieli, D., Adaptive linear step-up procedures that control the false discovery rate. Biometrika 93:3 (2006), 491–507.
2. Csardi, G., Nepusz, T., The igraph software package for complex network research. Inter. J. Complex Syst. 1695:5 (2006), 1–9.
3. Deng, Y., Jiang, Y.-H., Yang, Y., He, Z., Luo, F., Zhou, J., Molecular ecological network analyses. Bmc Bioinforma., 13, 2012.
4. Eldridge, D.J., Woodhouse, J.N., Curlevski, N.J., Hayward, M., Brown, M.V., Neilan, B.A., Soil-foraging animals alter the composition and co-occurrence of microbial communities in a desert shrubland. ISME J. 9:12 (2015), 2671–2681.
5. Fargione, J., Brown, C.S., Tilman, D., Community assembly and invasion: an experimental test of neutral versus niche processes. Proc. Natl. Acad. Sci. U. S. A., 101(1), 2004 414–414.
6. Faust, K., Raes, J., Microbial interactions: from networks to models. Nat. Rev. Microbiol. 10:8 (2012), 538–550.
7. Gifford, S.M., Sharma, S., Moran, M.A., Linking activity and function to ecosystem dynamics in a coastal bacterioplankton community. Front. Microbiol., 5, 2014, 185.
8. Jang, H.M., Cho, H.U., Park, S.K., Ha, J.H., Park, J.M., Influence of thermophilic aerobic digestion as a sludge pre-treatment and solids retention time of mesophilic anaerobic digestion on the methane production, sludge digestion and microbial communities in a sequential digestion process. Water Res. 48 (2014), 1–14.
9. Kim, J., Lee, C., Response of a continuous anaerobic digester to temperature transitions: a critical range for restructuring the microbial community structure and function. Water Res. 89 (2016), 241–251.
10. Lee, J., Han, G., Shin, S.G., Koo, T., Cho, K., Kim, W., Hwang, S., Seasonal monitoring of bacteria and archaea in a full-scale thermophilic anaerobic digester treating food waste-recycling wastewater: correlations between microbial community characteristics and process variables. Chem. Eng. J. 300 (2016), 291–299.
11. Leven, L., Eriksson, A.R.B., Schnurer, A., Effect of process temperature on bacterial and archaeal communities in two methanogenic bioreactors treating organic household waste. FEMS Microbiol. Ecol. 59:3 (2007), 683–693.
12. Li, J.B., Rui, J.P., Pei, Z.J., Sun, X.R., Zhang, S.H., Yan, Z.Y., Wang, Y.P., Liu, X.F., Zheng, T., Li, X.Z., Straw- and slurry-associated prokaryotic communities differ during co-fermentation of straw and swine manure. Appl. Microbiol. Biotechnol. 98:10 (2014), 4771–4780.
13. Li, J.B., Rui, J.P., Yao, M.J., Zhang, S.H., Yan, X.F., Wang, Y.P., Yan, Z.Y., Li, X.Z., Substrate type and free ammonia determine bacterial community structure in full-scale mesophilic anaerobic digesters treating cattle or swine manure. Front. Microbiol., 6, 2015, 10.
14. Lin, Q., De Vrieze, J., He, G., Li, X., Li, J., Temperature regulates methane production through the function centralization of microbial community in anaerobic digestion. Bioresour. Technol. 216 (2016), 150–158.
15. Lin, Q., He, G., Rui, J., Fang, X., Tao, Y., Li, J., Li, X., Microorganism-regulated mechanisms of temperature effects on the performance of anaerobic digestion. Microb. Cell Fact., 15(1), 2016, 96.
16. Ma, B., Wang, H., Dsouza, M., Lou, J., He, Y., Dai, Z., Brookes, P.C., Xu, J., Gilbert, J.A., Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China. ISME J. 10:8 (2016), 1891–1901.
17. Maus, I., Cibis, K.G., Wibberg, D., Winkler, A., Stolze, Y., Konig, H., Puhler, A., Schluter, A., Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant. J. Biotechnol. 203 (2015), 17–18.
18. Newman, M.E.J., Modularity and community structure in networks. Proc. Natl. Acad. Sci. U. S. A. 103:23 (2006), 8577–8582.
19. Niu, L.L., Song, L., Liu, X.L., Dong, X.Z., Tepidimicrobium xylanilyticum sp nov., an anaerobic xylanolytic bacterium, and emended description of the genus Tepidimicrobium. Int. J. Syst. Evol. Microbiol. 59 (2009), 2698–2701.
20. Park, M.J., Jo, J.H., Park, D., Lee, D.S., Park, J.M., Comprehensive study on a two-stage anaerobic digestion process for the sequential production of hydrogen and methane from cost-effective molasses. Int. J. Hydrog. Energy 35:12 (2010), 6194–6202.
21. Peu, P., Brugere, H., Pourcher, A.M., Kerouredan, M., Godon, J.J., Delgenes, J.P., Dabert, P., Dynamics of a pig slurry microbial community during anaerobic storage and management. Appl. Environ. Microbiol. 72:5 (2006), 3578–3585.
22. Proulx, S.R., Promislow, D.E., Phillips, P.C., Network thinking in ecology and evolution. Trends Ecol. Evol. 20:6 (2005), 345–353.
23. Rui, J., Li, J., Zhang, S., Yan, X., Wang, Y., Li, X., The core populations and co-occurrence patterns of prokaryotic communities in household biogas digesters. Biotechnol. Biofuels, 8, 2015, 158.
24. Sousa, D.Z., Smidt, H., Alves, M.M., Stams, A.J.M., Syntrophomonas zehnderi sp nov., an anaerobe that degrades long-chain fatty acids in co-culture with Methanobacterium formicicum. Int. J. Syst. Evol. Microbiol. 57 (2007), 609–615.
25. Wang, C.C., Chang, C.W., Chu, C.P., Lee, D.J., Chang, B.V., Liao, C.S., Producing hydrogen from wastewater sludge by Clostridium bifermentans. J. Biotechnol. 102:1 (2003), 83–92.
26. Widder, S., Allen, R.J., Pfeiffer, T., Curtis, T.P., Wiuf, C., Sloan, W.T., Cordero, O.X., Brown, S.P., Momeni, B., Shou, W., Kettle, H., Flint, H.J., Haas, A.F., Laroche, B., Kreft, J.U., Rainey, P.B., Freilich, S., Schuster, S., Milferstedt, K., van der Meer, J.R., Grobetakopf, T., Huisman, J., Free, A., Picioreanu, C., Quince, C., Klapper, I., Labarthe, S., Smets, B.F., Wang, H., Isaac Newton Institute F, Soyer, O.S., Challenges in microbial ecology: building predictive understanding of community function and dynamics. ISME J. 10:11 (2016), 2557–2568.
27. Zhang, C.Y., Liu, X.L., Dong, X.Z., Syntrophomonas curvata sp nov., an anaerobe that degrades fatty acids in co-culture with methanogens. Int. J. Syst. Evol. Microbiol. 54 (2004), 969–973.
28. Zhang, X.M., Johnston, E.R., Liu, W., Li, L.H., Han, X.G., Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes. Glob. Change Biol. 22:1 (2016), 198–207.
29. Zhou, J.Z., Deng, Y., Zhang, P., Xue, K., Liang, Y.T., Van Nostrand, J.D., Yang, Y.F., He, Z.L., Wu, L.Y., Stahl, D.A., Hazen, T.C., Tiedje, J.M., Arkin, A.P., Stochasticity, succession, and environmental perturbations in a fluidic ecosystem. Proc. Natl. Acad. Sci. U. S. A. 111:9 (2014), E836–E845.