Reducing antibiotic resistance genes, integrons, and pathogens in dairy manure by continuous thermophilic composting

Bioresource Technology

Volumn 220, Issue , 2016, Pages 425-432

  Qian, Xun ^a   Sun, Wei ^a   Gu, Jie ^a   Wang, Xiao Juan ^a   Zhang, Ya Jun ^a   Duan, Man Li ^a   Li, Hai Chao ^a   Zhang, Ran Ran ^a  

^a NORTHWEST A F UNIVERSITY   (China)

Author keywords

Antibiotic resistance gene; Bacterial community; Composting; Horizontal gene transfer; Temperature

Indexed keywords

ANTIBIOTICS; BACTERIA; COMPOSTING; FERTILIZERS; GENE TRANSFER; GENES; HEALTH RISKS; MANURES; PUBLIC RISKS; TEMPERATURE;

ANIMAL MANURE; ANTIBIOTIC RESISTANCE GENES; BACTERIAL COMMUNITY; DAIRY MANURES; HORIZONTAL GENE TRANSFER; PATHOGENIC BACTERIUM; REDUNDANCY ANALYSIS; THREE TEMPERATURE;

TEMPERATURE CONTROL;

AMPICILLIN; CHLORAMPHENICOL; RNA 16S; STREPTOMYCIN; SULFONAMIDE; TETRACYCLINE DERIVATIVE; ANTIINFECTIVE AGENT; MANURE;

ANTIBIOTIC RESISTANCE; BACTERIUM; BIOTECHNOLOGY; COMPOSTING; GENE FLOW; MANURE; PATHOGEN; PUBLIC HEALTH; RECOMBINATION; TEMPERATURE PROFILE;

ANTIBIOTIC RESISTANCE; ARTICLE; BACILLUS; BACTERIAL GENE; BORDETELLA; BRUCELLA; BURKHOLDERIA; CLOSTRIDIUM; COMPOSTING; CORYNEBACTERIUM; ESCHERICHIA; GENE SEQUENCE; HAEMOPHILUS; HORIZONTAL GENE TRANSFER; INTEGRON; MANURE; MICROBIAL COMMUNITY; NONHUMAN; PATHOGENESIS; PRIORITY JOURNAL; PSEUDOMONAS; REDUNDANCY ANALYSIS; SALMONELLA; SHIGELLA; STAPHYLOCOCCUS; STREPTOCOCCUS; TEMPERATURE; YERSINIA; ANIMAL; BIOREMEDIATION; DNA DENATURATION; DNA SEQUENCE; GENETICS; MICROBIOLOGY;

ANIMALIA; BACTERIA (MICROORGANISMS);

ANIMALS; ANTI-BACTERIAL AGENTS; BIODEGRADATION, ENVIRONMENTAL; DRUG RESISTANCE, MICROBIAL; GENES, BACTERIAL; INTEGRONS; MANURE; NUCLEIC ACID DENATURATION; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; TEMPERATURE;

EID: 84985006714     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2016.08.101     Document Type: Article

References (33)

1. Antunes, P., Machado, J., Sousa, J.C., Peixe, L., Dissemination of sulfonamide resistance genes (sul1, sul2, and sul3) in Portuguese Salmonella enterica strains and relation with integrons. Antimicrob. Agents Chemother. 49:2 (2005), 836–839.
2. Bernal, M.P., Alburquerque, J.A., Moral, R., Composting of animal manures and chemical criteria for compost maturity assessment. A review. Bioresour. Technol. 100:22 (2009), 5444–5453.
3. Cui, E., Wu, Y., Zuo, Y., Chen, H., Effect of different biochars on antibiotic resistance genes and bacterial community during chicken manure composting. Bioresour. Technol. 203 (2016), 11–17.
4. DelVecchio, V.G., Kapatral, V., Redkar, R.J., Patra, G., Mujer, C., Los, T., Reznik, G., The genome sequence of the facultative intracellular pathogen Brucella melitensis. Proc. Natl. Acad. Sci. 99:1 (2002), 443–448.
5. Diehl, D.L., LaPara, T.M., Effect of temperature on the fate of genes encoding tetracycline resistance and the integrase of class 1 integrons within anaerobic and aerobic digesters treating municipal wastewater solids. Environ. Sci. Technol. 44 (2010), 9128–9133.
6. Fang, H., Wang, H., Cai, L., Yu, Y., Prevalence of antibiotic resistance genes and bacterial pathogens in long-term manured greenhouse soils as revealed by metagenomic survey. Environ. Sci. Technol. 49:2 (2015), 1095–1104.
7. Ghosh, S., Ramsden, S.J., LaPara, T.M., The role of anaerobic digestion in controlling the release of tetracycline resistance genes and class 1 integrons from municipal wastewater treatment plants. Appl. Microbiol. Biotechnol. 84 (2009), 791–796.
8. Hall, R.M., Stokes, H.W., Integrons: novel DNA elements which capture genes by site-specific recombination. Genetica 90:2–3 (1993), 115–132.
9. Hall, R.M., Recchia, G.D., Collis, C.M., Brown, H.J., Stokes, H.W., Gene cassettes and integrons: moving antibiotic resistance genes in Gram negative bacteria. Ciba Found. Symp., 1996, 19–34.
10. Heuer, H., Schmitt, H., Smalla, K., Antibiotic resistance gene spread due to manure application on agricultural fields. Curr. Opin. Microbiol. 14 (2011), 236–243.
11. Ho, Y.B., Zakaria, M.P., Latif, P.A., Saari, N., Degradation of veterinary antibiotics and hormone during broiler manure composting. Bioresour. Technol. 131 (2013), 476–484.
12. Hu, Y., Yang, X., Qin, J., Lu, N., Cheng, G., Wu, N., Meng, Z., Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota. Nat. Commun., 4, 2013, 2151.
13. Jia, S., Shi, P., Hu, Q., Li, B., Zhang, T., Zhang, X.X., Bacterial community shift drives antibiotic resistance promotion during drinking water chlorination. Environ. Sci. Technol. 49:20 (2015), 12271–12279.
14. Johnsen, A.R., Kroer, N., Effects of stress and other environmental factors on horizontal plasmid transfer assessed by direct quantification of discrete transfer events. FEMS Microbiol. Ecol. 59:3 (2007), 718–728.
15. Joy, S.R., Li, X., Snow, D.D., Gilley, J.E., Woodbury, B., Bartelt-Hunt, S.L., Fate of antimicrobials and antimicrobial resistance genes in simulated swine manure storage. Sci. Total Environ. 481 (2014), 69–74.
16. Keener, H.M., Dick, W.A., Hoitink, H.A.J., Composting and beneficial utilization of composted by-product materials. Dick, W.A., (eds.) Land Application of Agricultural, Industrial, and Municipal By-Products, 2000, Soil Science Society of America, Inc., Madison, 315–341.
17. Larney, F.J., Hao, X., A review of composting as a management alternative for beef cattle feedlot manure in southern Alberta, Canada. Bioresour. Technol. 98:17 (2007), 3221–3227.
18. Mazel, D., Davies, J., Antibiotic resistance in microbes. Cell. Mol. Life Sci. 56:9–10 (1999), 742–754.
19. Miller, J.H., Novak, J.T., Knocke, W.R., Pruden, A., Survival of antibiotic resistant bacteria and horizontal gene transfer control antibiotic resistance gene content in anaerobic digesters. Front. Microbiol., 7, 2016, 263.
20. Qian, X., Sun, W., Gu, J., Wang, X.J., Sun, J.J., Yin, Y.N., Duan, M.L., Variable effects of oxytetracycline on antibiotic resistance gene abundance and the bacterial community during aerobic composting of cow manure. J. Hazard. Mater. 315 (2016), 61–69.
21. Recchia, G.D., Hall, R.M., Gene cassettes: a new class of mobile element. Microbiology 141:12 (1995), 3015–3027.
22. Rowe-Magnus, D.A., Mazel, D., The role of integrons in antibiotic resistance gene capture. Int. J. Med. Microbiol. 292:2 (2002), 115–125.
23. Sarmah, A.K., Meyer, M.T., Boxall, A.B., A global perspective on the use, sales, exposure pathways, occurrence, fate and effects of veterinary antibiotics (VAs) in the environment. Chemosphere 65:5 (2006), 725–759.
24. Selvam, D., Xu, Z., Zhao, J.W.C., Wong, J.W., Fate of tetracycline, sulfonamide and fluoroquinolone resistance genes and the changes in bacterial diversity during composting of swine manure. Bioresour. Technol. 126 (2012), 383–390.
25. Stegmann, E., Frasch, H.J., Kilian, R., Pozzi, R., Self-resistance mechanisms of actinomycetes producing lipid II-targeting antibiotics. Int. J. Med. Microbiol. 305:2 (2015), 190–195.
26. Su, J., Wei, B., Ou-Yang, W., Huang, F., Zhao, Y., Xu, H., Zhu, Y., Antibiotic resistome and its association with bacterial communities during sewage sludge composting. Environ. Sci. Technol. 49:12 (2015), 7356–7363.
27. Sun, W., Qian, X., Gu, J., Wang, X., Duan, M., Mechanism and effect of temperature on variations in antibiotic resistance genes during anaerobic digestion of dairy manure. Sci. Rep., 6, 2016, 30237.
28. Thomas, C.M., Nielsen, K.M., Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Rev. Microbiol. 3:9 (2005), 711–721.
29. Woolhouse, M.E.J., Gowtage-Sequeria, S., 2006. Host range and emerging and reemerging pathogens. In: Ending the War Metaphor: The Changing Agenda for Unraveling the Host-Microbe Relationship-Workshop Summary, p. 192.
30. Xiao, Y., Zeng, G.M., Yang, Z.H., Shi, W.J., Huang, C., Fan, C.Z., Xu, Z.Y., Continuous thermophilic composting (CTC) for rapid biodegradation and maturation of organic municipal solid waste. Bioresour. Technol. 100:20 (2009), 4807–4813.
31. Yang, Q.X., Ren, S.W., Niu, T.Q., Guo, Y.H., Qi, S.Y., Han, X.K., Liu, D., Pan, F., Distribution of antibiotic resistant bacteria in chicken manure and manure fertilized vegetables. Environ. Sci. Pollut. Res. 21:2 (2014), 1231–1241.
32. Zhang, J., Chen, M., Sui, Q., Tong, J., Jiang, C., Lu, X., Wei, Y., Impacts of addition of natural zeolite or a nitrification inhibitor on antibiotic resistance genes during sludge composting. Water Res. 91 (2016), 339–349.
33. Zhu, Y.G., Johnson, T.A., Su, J.Q., Qiao, M., Guo, G.X., Stedtfeld, R.D., Tiedje, J.M., Diverse and abundant antibiotic resistance genes in Chinese swine farms. Proc. Natl. Acad. Sci. USA 110:9 (2013), 3435–3440.