Epidemiology of Danish Aeromonas salmonicida subsp. salmonicida in fish farms using whole genome sequencing

Frontiers in Microbiology

Volumn 8, Issue DEC, 2017, Pages

  Bartkova, Simona ^a   Leekitcharoenphon, Pimlapas ^a   Aarestrup, Frank M ^a   Dalsgaard, Inger ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

Aeromonas salmonicida subsp. salmonicida; BEAST; Furunculosis; Rainbow trout; SNP analysis; Virulence factors; Whole genome sequencing

Indexed keywords

AMINOGLYCOSIDE DERIVATIVE; BETA LACTAM; CHLORAMPHENICOL; IRON; SULFONAMIDE; TETRACYCLINE DERIVATIVE; TRIMETHOPRIM;

ANTIBIOTIC RESISTANCE; ARTICLE; BAYESIAN LEARNING; CHROMOSOME ABERRATION; CONTROLLED STUDY; DNA EXTRACTION; FARM ANIMAL; GENETIC VARIABILITY; GENOMIC ISLAND; INFORMATION PROCESSING; KNOWLEDGE; MAXIMUM LIKELIHOOD METHOD; MOLECULAR EPIDEMIOLOGY; NONHUMAN; PHYLOGENETIC TREE; PLASMID; PROTEIN LOCALIZATION; RESEARCH; SALMONID FURUNCULOSIS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; TEMPORAL ARTERY; VIRULENCE; WHOLE GENOME SEQUENCING;

EID: 85036609046     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2017.02411     Document Type: Article

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