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Volumn 11, Issue 12, 2017, Pages 2864-2868

DRep: A tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; COMPARATIVE STUDY; DATA SET; GENOME; GENOMICS;

EID: 85034643980     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2017.126     Document Type: Article
Times cited : (1279)

References (19)
  • 1
    • 84953439697 scopus 로고    scopus 로고
    • Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
    • Bendall ML, Stevens SL, Chan L-K, Malfatti S, Schwientek P, Tremblay J et al. (2016). Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME J 10: 1589-1601.
    • (2016) ISME J , vol.10 , pp. 1589-1601
    • Bendall, M.L.1    Stevens, S.L.2    Chan, L.-K.3    Malfatti, S.4    Schwientek, P.5    Tremblay, J.6
  • 5
    • 85029748101 scopus 로고    scopus 로고
    • Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics
    • Lee STM, Kahn SA, Delmont TO, Shaiber A, Esen ÖC, Hubert NA et al. (2017). Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics. Microbiome 5: 50.
    • (2017) Microbiome , vol.5 , pp. 50
    • Lee, S.T.M.1    Kahn, S.A.2    Delmont, T.O.3    Shaiber, A.4    Esen, Ö.C.5    Hubert, N.A.6
  • 6
    • 85017559090 scopus 로고    scopus 로고
    • Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates
    • Olm MR, Brown CT, Brooks B, Firek B, Baker R, Burstein D et al. (2017). Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates. Genome Res gr-213256 27: 601-612.
    • (2017) Genome Res Gr-213256 , vol.27 , pp. 601-612
    • Olm, M.R.1    Brown, C.T.2    Brooks, B.3    Firek, B.4    Baker, R.5    Burstein, D.6
  • 8
    • 84937040910 scopus 로고    scopus 로고
    • CheckM: Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
    • Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. (2015). CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 25: 1043-1055.
    • (2015) Genome Res , vol.25 , pp. 1043-1055
    • Parks, D.H.1    Imelfort, M.2    Skennerton, C.T.3    Hugenholtz, P.4    Tyson, G.W.5
  • 9
    • 84978288634 scopus 로고    scopus 로고
    • Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations
    • Probst AJ, Castelle CJ, Singh A, Brown CT, Anantharaman K, Sharon I et al. (2016). Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations. Environ Microbiol 19: 459-474.
    • (2016) Environ Microbiol , vol.19 , pp. 459-474
    • Probst, A.J.1    Castelle, C.J.2    Singh, A.3    Brown, C.T.4    Anantharaman, K.5    Sharon, I.6
  • 11
    • 84976329731 scopus 로고    scopus 로고
    • Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants
    • Raveh-Sadka T, Firek B, Sharon I, Baker R, Brown CT, Thomas BC et al. (2016). Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants. ISME J 10: 2817-2830.
    • (2016) ISME J , vol.10 , pp. 2817-2830
    • Raveh-Sadka, T.1    Firek, B.2    Sharon, I.3    Baker, R.4    Brown, C.T.5    Thomas, B.C.6
  • 12
    • 85006276920 scopus 로고    scopus 로고
    • Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development Kolter R (ed)
    • Raveh-Sadka T, Thomas BC, Singh A, Firek B, Brooks B, Castelle CJ et al. (2015). Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development Kolter R (ed). eLife 4: e05477.
    • (2015) ELife , vol.4 , pp. e05477
    • Raveh-Sadka, T.1    Thomas, B.C.2    Singh, A.3    Firek, B.4    Brooks, B.5    Castelle, C.J.6
  • 13
    • 73149098333 scopus 로고    scopus 로고
    • Shifting the genomic gold standard for the prokaryotic species definition
    • Richter M, Rosselló-Móra R. (2009). Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106: 19126-19131.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 19126-19131
    • Richter, M.1    Rosselló-Móra, R.2
  • 15
    • 84871956840 scopus 로고    scopus 로고
    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
    • Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF. (2013). Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Res 23: 111-120.
    • (2013) Genome Res , vol.23 , pp. 111-120
    • Sharon, I.1    Morowitz, M.J.2    Thomas, B.C.3    Costello, E.K.4    Relman, D.A.5    Banfield, J.F.6
  • 16
    • 1542377296 scopus 로고    scopus 로고
    • Community structure and metabolism through reconstruction of microbial genomes from the environment
    • Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM et al. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43.
    • (2004) Nature , vol.428 , pp. 37-43
    • Tyson, G.W.1    Chapman, J.2    Hugenholtz, P.3    Allen, E.E.4    Ram, R.J.5    Richardson, P.M.6
  • 19
    • 84961219396 scopus 로고    scopus 로고
    • Metagenomic sequencing with strainlevel resolution implicates uropathogenic e coli in necrotizing enterocolitis and mortality in preterm infants
    • Ward DV, Scholz M, Zolfo M, Taft DH, Schibler KR, Tett A et al. (2016). Metagenomic sequencing with strainlevel resolution implicates uropathogenic E. coli in necrotizing enterocolitis and mortality in preterm infants. Cell Rep 14: 2912-2924.
    • (2016) Cell Rep , vol.14 , pp. 2912-2924
    • Ward, D.V.1    Scholz, M.2    Zolfo, M.3    Taft, D.H.4    Schibler, K.R.5    Tett, A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.