-
1
-
-
84879678051
-
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
-
Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH. (2013). Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat Biotechnol 31: 533-538
-
(2013)
Nat Biotechnol
, vol.31
, pp. 533-538
-
-
Albertsen, M.1
Hugenholtz, P.2
Skarshewski, A.3
Nielsen, K.L.4
Tyson, G.W.5
Nielsen, P.H.6
-
2
-
-
33846923050
-
Genome dynamics in a natural archaeal population
-
Allen EE, Tyson GW, Whitaker RJ, Detter JC, Richardson PM, Banfield JF. (2007). Genome dynamics in a natural archaeal population. Proc Natl Acad Sci USA 104: 1883-1888
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 1883-1888
-
-
Allen, E.E.1
Tyson, G.W.2
Whitaker, R.J.3
Detter, J.C.4
Richardson, P.M.5
Banfield, J.F.6
-
3
-
-
77957746208
-
Genome-wide mutational diversity in an evolving population of Escherichia coli
-
Barrick JE, Lenski RE. (2009). Genome-wide mutational diversity in an evolving population of Escherichia coli. Cold Spring Harb Symp Quant Biol 74: 119-129
-
(2009)
Cold Spring Harb Symp Quant Biol
, vol.74
, pp. 119-129
-
-
Barrick, J.E.1
Lenski, R.E.2
-
4
-
-
70350641005
-
Genome evolution and adaptation in a long-Term experiment with Escherichia coli
-
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, et al. (2009). Genome evolution and adaptation in a long-Term experiment with Escherichia coli. Nature 461: 1243-1247
-
(2009)
Nature
, vol.461
, pp. 1243-1247
-
-
Barrick, J.E.1
Yu, D.S.2
Yoon, S.H.3
Jeong, H.4
Oh, T.K.5
Schneider, D.6
-
5
-
-
84857470045
-
Patterns of gene flow define species of thermophilic Archaea
-
Cadillo-Quiroz H, Didelot X, Held NL, Herrera A, Darling A, Reno ML, et al. (2012). Patterns of gene flow define species of thermophilic Archaea. PLos Biol 10: e1001265
-
(2012)
PLos Biol
, vol.10
, pp. e1001265
-
-
Cadillo-Quiroz, H.1
Didelot, X.2
Held, N.L.3
Herrera, A.4
Darling, A.5
Reno, M.L.6
-
6
-
-
78650609210
-
Unprecedented levels of horizontal gene transfer among spatially co-occurring Shewanella bacteria from the Baltic Sea
-
Caro-Quintero A, Deng J, Auchtung J, Brettar I, Hofle MG, Klappenbach J, et al. (2011). Unprecedented levels of horizontal gene transfer among spatially co-occurring Shewanella bacteria from the Baltic Sea. ISME J 5: 131-140
-
(2011)
ISME J
, vol.5
, pp. 131-140
-
-
Caro-Quintero, A.1
Deng, J.2
Auchtung, J.3
Brettar, I.4
Hofle, M.G.5
Klappenbach, J.6
-
9
-
-
0028173732
-
The effects of rare but promiscuous genetic exchange on evolutionary divergence in prokaryotes
-
Cohan FM. (1994). The effects of rare but promiscuous genetic exchange on evolutionary divergence in prokaryotes. Am Nat 143: 965-986
-
(1994)
Am Nat
, vol.143
, pp. 965-986
-
-
Cohan, F.M.1
-
10
-
-
0035527404
-
Bacterial species and speciation
-
Cohan FM. (2001). Bacterial species and speciation. Syst Biol 50: 513-524
-
(2001)
Syst Biol
, vol.50
, pp. 513-524
-
-
Cohan, F.M.1
-
11
-
-
34247884459
-
A systematics for discovering the fundamental units of bacterial diversity
-
Cohan FM, Perry EB. (2007). A systematics for discovering the fundamental units of bacterial diversity. Curr Biol 17: R373-R386
-
(2007)
Curr Biol
, vol.17
, pp. R373-R386
-
-
Cohan, F.M.1
Perry, E.B.2
-
12
-
-
34548491646
-
Code and context: Prochlorococcus as a model for cross-scale biology
-
Coleman ML, Chisholm SW. (2007). Code and context: Prochlorococcus as a model for cross-scale biology. Trends Microbiol 15: 398-407
-
(2007)
Trends Microbiol
, vol.15
, pp. 398-407
-
-
Coleman, M.L.1
Chisholm, S.W.2
-
13
-
-
84896398453
-
Explaining microbial genomic diversity in light of evolutionary ecology
-
Cordero OX, Polz MF. (2014). Explaining microbial genomic diversity in light of evolutionary ecology. Nat Rev Microbiol 12: 263-273
-
(2014)
Nat Rev Microbiol
, vol.12
, pp. 263-273
-
-
Cordero, O.X.1
Polz, M.F.2
-
14
-
-
0033860832
-
RpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity
-
Dahllof I, Baillie H, Kjelleberg S. (2000). rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl Environ Microbiol 66: 3376-3380
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3376-3380
-
-
Dahllof, I.1
Baillie, H.2
Kjelleberg, S.3
-
15
-
-
84895751645
-
PhyloSift: Phylogenetic analysis of genomes and metagenomes
-
Darling AE, Jospin G, Lowe E, Matsen FA, Bik HM, Eisen JA. (2014). PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2: e243
-
(2014)
PeerJ
, vol.2
, pp. e243
-
-
Darling, A.E.1
Jospin, G.2
Lowe, E.3
Matsen, F.A.4
Bik, H.M.5
Eisen, J.A.6
-
16
-
-
84860160394
-
In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids
-
Denef VJ, Banfield JF. (2012). In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids. Science 336: 462-466
-
(2012)
Science
, vol.336
, pp. 462-466
-
-
Denef, V.J.1
Banfield, J.F.2
-
17
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, et al. (2011). A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43: 491-498
-
(2011)
Nat Genet
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
-
18
-
-
84861847839
-
Population genomics: How bacterial species form and why they don?t exist
-
Doolittle WF. (2012). Population genomics: how bacterial species form and why they don?t exist. Curr Biol 22: R451-R453
-
(2012)
Curr Biol
, vol.22
, pp. R451-R453
-
-
Doolittle, W.F.1
-
19
-
-
0029610851
-
The RecA protein as a model molecule for molecular systematic studies of bacteria: Comparison of trees of RecAs and 16S rRNAs from the same species
-
Eisen JA. (1995). The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species. J Mol Evol 41: 1105-1123
-
(1995)
J Mol Evol
, vol.41
, pp. 1105-1123
-
-
Eisen, J.A.1
-
20
-
-
0035909914
-
Recombination and mutation during longterm gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size, and minimal age
-
Falush D, Kraft C, Taylor NS, Correa P, Fox JG, Achtman M, et al. (2001). Recombination and mutation during longterm gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age. Proc Natl Acad Sci USA 98: 15056-15061
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 15056-15061
-
-
Falush, D.1
Kraft, C.2
Taylor, N.S.3
Correa, P.4
Fox, J.G.5
Achtman, M.6
-
21
-
-
33846625056
-
Recombination and the nature of bacterial speciation
-
Fraser C, Hanage WP, Spratt BG. (2007). Recombination and the nature of bacterial speciation. Science 315: 476-480
-
(2007)
Science
, vol.315
, pp. 476-480
-
-
Fraser, C.1
Hanage, W.P.2
Spratt, B.G.3
-
22
-
-
59849086092
-
The bacterial species challenge: Making sense of genetic and ecological diversity
-
Fraser C, Alm EJ, Polz MF, Spratt BG, Hanage WP. (2009). The bacterial species challenge: making sense of genetic and ecological diversity. Science 323: 741-746
-
(2009)
Science
, vol.323
, pp. 741-746
-
-
Fraser, C.1
Alm, E.J.2
Polz, M.F.3
Spratt, B.G.4
Hanage, W.P.5
-
23
-
-
0028030110
-
Detecting selective sweeps in naturally occurring Escherichia coli
-
Guttman DS, Dykhuizen DE. (1994). Detecting selective sweeps in naturally occurring Escherichia coli. Genetics 138: 993-1003
-
(1994)
Genetics
, vol.138
, pp. 993-1003
-
-
Guttman, D.S.1
Dykhuizen, D.E.2
-
24
-
-
84874535714
-
Parallel evolutionary dynamics of adaptive diversification in Escherichia coli
-
Herron MD, Doebeli M. (2013). Parallel evolutionary dynamics of adaptive diversification in Escherichia coli. PLos Biol 11: e1001490
-
(2013)
PLos Biol
, vol.11
, pp. e1001490
-
-
Herron, M.D.1
Doebeli, M.2
-
25
-
-
44449178480
-
Resource partitioning and sympatric differentiation among closely related bacterioplankton
-
Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, Polz MF. (2008). Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320: 1081-1085
-
(2008)
Science
, vol.320
, pp. 1081-1085
-
-
Hunt, D.E.1
David, L.A.2
Gevers, D.3
Preheim, S.P.4
Alm, E.J.5
Polz, M.F.6
-
26
-
-
84856659328
-
Untangling genomes from metagenomes: Revealing an uncultured class of marine Euryarchaeota
-
Iverson V, Morris RM, Frazar CD, Berthiaume CT, Morales RL, Armbrust EV. (2012). Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota. Science 335: 587-590
-
(2012)
Science
, vol.335
, pp. 587-590
-
-
Iverson, V.1
Morris, R.M.2
Frazar, C.D.3
Berthiaume, C.T.4
Morales, R.L.5
Armbrust, E.V.6
-
27
-
-
33645216333
-
Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
-
Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EMS, Chisholm SW. (2006). Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science 311: 1737-1740
-
(2006)
Science
, vol.311
, pp. 1737-1740
-
-
Johnson, Z.I.1
Zinser, E.R.2
Coe, A.3
McNulty, N.P.4
Woodward, E.M.S.5
Chisholm, S.W.6
-
28
-
-
84940387197
-
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
-
Kang DD, Froula J, Egan R, Wang Z. (2015). MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities. PeerJ 3: e1165
-
(2015)
PeerJ
, vol.3
, pp. e1165
-
-
Kang, D.D.1
Froula, J.2
Egan, R.3
Wang, Z.4
-
29
-
-
14044262978
-
Genomic insights that advance the species definition for prokaryotes
-
Konstantinidis KT, Tiedje JM. (2005). Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci USA 102: 2567-2572
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2567-2572
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
30
-
-
53849115701
-
Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
-
Konstantinidis KT, DeLong EF. (2008). Genomic patterns of recombination, clonal divergence and environment in marine microbial populations. ISME J 2: 1052-1065
-
(2008)
ISME J
, vol.2
, pp. 1052-1065
-
-
Konstantinidis, K.T.1
DeLong, E.F.2
-
31
-
-
84867339877
-
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by wholegenome sequencing
-
Lee H, Popodi E, Tang HX, Foster PL. (2012). Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by wholegenome sequencing. Proc Natl Acad Sci USA 109: E2774-E2783
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. E2774-E2783
-
-
Lee, H.1
Popodi, E.2
Tang, H.X.3
Foster, P.L.4
-
32
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
33
-
-
84942887758
-
SOAPdenovo2: An empirically improved memoryefficient short-read de novo assembler
-
Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, et al. (2012). SOAPdenovo2: an empirically improved memoryefficient short-read de novo assembler. Gigascience 1: 18
-
(2012)
Gigascience
, vol.1
, pp. 18
-
-
Luo, R.1
Liu, B.2
Xie, Y.3
Li, Z.4
Huang, W.5
Yuan, J.6
-
34
-
-
80054913451
-
FLASH: Fast length adjustment of short reads to improve genome assemblies
-
Magoc T, Salzberg SL. (2011). FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27: 2957-2963
-
(2011)
Bioinformatics
, vol.27
, pp. 2957-2963
-
-
Magoc, T.1
Salzberg, S.L.2
-
35
-
-
84861930803
-
The multiplicity of divergence mechanisms in a single evolving population
-
Maharjan RP, Ferenci T, Reeves PR, Li Y, Liu B, Wang L. (2012). The multiplicity of divergence mechanisms in a single evolving population. Gene Biol 13: R41
-
(2012)
Gene Biol
, vol.13
, pp. R41
-
-
Maharjan, R.P.1
Ferenci, T.2
Reeves, P.R.3
Li, Y.4
Liu, B.5
Wang, L.6
-
36
-
-
0344931878
-
Adapt globally, act locally: The effect of selective sweeps on bacterial sequence diversity
-
Majewski J, Cohan FM. (1999). Adapt globally, act locally: the effect of selective sweeps on bacterial sequence diversity. Genetics 152: 1459-1474
-
(1999)
Genetics
, vol.152
, pp. 1459-1474
-
-
Majewski, J.1
Cohan, F.M.2
-
37
-
-
77957000882
-
Temporal dynamics of prochlorococcus ecotypes in the atlantic and pacific oceans
-
Malmstrom RR, Coe A, Kettler GC, Martiny AC, Frias-Lopez J, Zinser ER, et al. (2010). Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans. ISME J 4: 1252-1264
-
(2010)
ISME J
, vol.4
, pp. 1252-1264
-
-
Malmstrom, R.R.1
Coe, A.2
Kettler, G.C.3
Martiny, A.C.4
Frias-Lopez, J.5
Zinser, E.R.6
-
38
-
-
84861898310
-
Img: The integrated microbial genomes database and comparative analysis system
-
Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, et al. (2012). IMG: the Integrated Microbial Genomes database and comparative analysis system. Nucleic Acids Res 40: D115-D122
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D115-D122
-
-
Markowitz, V.M.1
Chen, I.M.2
Palaniappan, K.3
Chu, K.4
Szeto, E.5
Grechkin, Y.6
-
39
-
-
77956295988
-
The genome analysis toolkit: A mapreduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. (2010). The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20: 1297-1303
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
-
40
-
-
84885911072
-
Population genomics of rapid adaptation by soft selective sweeps
-
Messer PW, Petrov DA. (2013). Population genomics of rapid adaptation by soft selective sweeps. Trends Ecol Evol 28: 659-669
-
(2013)
Trends Ecol Evol
, vol.28
, pp. 659-669
-
-
Messer, P.W.1
Petrov, D.A.2
-
41
-
-
0032950018
-
Photophysiology of the marine cyanobacterium Prochlorococcus: Ecotypic differences among cultured isolates
-
Moore LR, Chisholm SW. (1999). Photophysiology of the marine cyanobacterium Prochlorococcus: ecotypic differences among cultured isolates. Limnol Oceanogr 44: 628-638
-
(1999)
Limnol Oceanogr
, vol.44
, pp. 628-638
-
-
Moore, L.R.1
Chisholm, S.W.2
-
42
-
-
80052753042
-
Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem
-
Oh S, Caro-Quintero A, Tsementzi D, DeLeon-Rodriguez N, Luo CW, Poretsky R, et al. (2011). Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem. Appl Environ Microbiol 77: 6000-6011
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 6000-6011
-
-
Oh, S.1
Caro-Quintero, A.2
Tsementzi, D.3
DeLeon-Rodriguez, N.4
Luo, C.W.5
Poretsky, R.6
-
43
-
-
84937040910
-
CheckM: Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
-
Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. (2015). CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 25: 1043-1055
-
(2015)
Genome Res
, vol.25
, pp. 1043-1055
-
-
Parks, D.H.1
Imelfort, M.2
Skennerton, C.T.3
Hugenholtz, P.4
Tyson, G.W.5
-
44
-
-
84880863425
-
Metastats: An improved statistical method for analysis of metagenomic data
-
Paulson JN, Pop M, Bravo HC. (2011). Metastats: an improved statistical method for analysis of metagenomic data. Genome Biol 12: P17
-
(2011)
Genome Biol
, vol.12
, pp. P17
-
-
Paulson, J.N.1
Pop, M.2
Bravo, H.C.3
-
45
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, et al. (2013). Insights into the phylogeny and coding potential of microbial dark matter. Nature 499: 431-437
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
Ivanova, N.N.4
Anderson, I.J.5
Cheng, J.F.6
-
46
-
-
0042878464
-
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
-
Rocap G, Larimer FW, Lamerdin J, Malfatti S, Chain P, Ahlgren NA, et al. (2003). Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 424: 1042-1047
-
(2003)
Nature
, vol.424
, pp. 1042-1047
-
-
Rocap, G.1
Larimer, F.W.2
Lamerdin, J.3
Malfatti, S.4
Chain, P.5
Ahlgren, N.A.6
-
47
-
-
77952670727
-
Viral and microbial community dynamics in four aquatic environments
-
Rodriguez-Brito B, Li LL, Wegley L, Furlan M, Angly F, Breitbart M, et al. (2010). Viral and microbial community dynamics in four aquatic environments. ISME J 4: 739-751
-
(2010)
ISME J
, vol.4
, pp. 739-751
-
-
Rodriguez-Brito, B.1
Li, L.L.2
Wegley, L.3
Furlan, M.4
Angly, F.5
Breitbart, M.6
-
48
-
-
84930626863
-
Fine-scale diversity and extensive recombination in a quasisexual bacterial population occupying a broad niche
-
Rosen MJ, Davison M, Bhaya D, Fisher DS. (2015). Fine-scale diversity and extensive recombination in a quasisexual bacterial population occupying a broad niche. Science 348: 1019-1023
-
(2015)
Science
, vol.348
, pp. 1019-1023
-
-
Rosen, M.J.1
Davison, M.2
Bhaya, D.3
Fisher, D.S.4
-
49
-
-
84859499489
-
Population genomics of early events in the ecological differentiation of bacteria
-
Shapiro BJ, Friedman J, Cordero OX, Preheim SP, Timberlake SC, Szabo G, et al. (2012). Population genomics of early events in the ecological differentiation of bacteria. Science 336: 48-51
-
(2012)
Science
, vol.336
, pp. 48-51
-
-
Shapiro, B.J.1
Friedman, J.2
Cordero, O.X.3
Preheim, S.P.4
Timberlake, S.C.5
Szabo, G.6
-
50
-
-
84899979623
-
Ordering microbial diversity into ecologically and genetically cohesive units
-
Shapiro BJ, Polz MF. (2014). Ordering microbial diversity into ecologically and genetically cohesive units. Trends Microbiol 22: 235-247
-
(2014)
Trends Microbiol
, vol.22
, pp. 235-247
-
-
Shapiro, B.J.1
Polz, M.F.2
-
51
-
-
84871956840
-
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
-
Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF. (2013). Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Res 23: 111-120
-
(2013)
Genome Res
, vol.23
, pp. 111-120
-
-
Sharon, I.1
Morowitz, M.J.2
Thomas, B.C.3
Costello, E.K.4
Relman, D.A.5
Banfield, J.F.6
-
52
-
-
48349103531
-
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation
-
Simmons SL, Dibartolo G, Denef VJ, Goltsman DS, Thelen MP, Banfield JF. (2008). Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. PLos Biol 6: e177
-
(2008)
PLos Biol
, vol.6
, pp. e177
-
-
Simmons, S.L.1
Dibartolo, G.2
Denef, V.J.3
Goltsman, D.S.4
Thelen, M.P.5
Banfield, J.F.6
-
53
-
-
33947398002
-
Minimus: A fast, lightweight genome assembler
-
Sommer DD, Delcher AL, Salzberg SL, Pop M. (2007). Minimus: a fast, lightweight genome assembler. BMC Bioinformatics 8: 64
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 64
-
-
Sommer, D.D.1
Delcher, A.L.2
Salzberg, S.L.3
Pop, M.4
-
54
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-Analysis of large phylogenies
-
Stamatakis A. (2014). RAxML version 8: a tool for phylogenetic analysis and post-Analysis of large phylogenies. Bioinformatics 30: 1312-1313
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
55
-
-
0031402617
-
A theoretical approach to structuring mechanisms in the pelagic food web
-
Thingstad TF. (1998). A theoretical approach to structuring mechanisms in the pelagic food web. Hydrobiologia 363: 59-72
-
(1998)
Hydrobiologia
, vol.363
, pp. 59-72
-
-
Thingstad, T.F.1
-
56
-
-
0033826796
-
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
-
Thingstad TF. (2000). Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol Oceanogr 45: 1320-1328
-
(2000)
Limnol Oceanogr
, vol.45
, pp. 1320-1328
-
-
Thingstad, T.F.1
-
57
-
-
0041289720
-
Species and the variety as ecological units
-
Turesson G. (1922). Species and the variety as ecological units. Hereditas 3: 100-113
-
(1922)
Hereditas
, vol.3
, pp. 100-113
-
-
Turesson, G.1
-
58
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, et al. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
-
59
-
-
8444238946
-
Evolution of the RNA polymerase B? Subunit gene (rpoB?) in Halobacteriales: A complementary molecular marker to the SSU rRNA gene
-
Walsh DA, Bapteste E, Kamekura M, Doolittle WF. (2004). Evolution of the RNA polymerase B? subunit gene (rpoB?) in Halobacteriales: a complementary molecular marker to the SSU rRNA gene. Mol Biol Evol 21: 2340-2351
-
(2004)
Mol Biol Evol
, vol.21
, pp. 2340-2351
-
-
Walsh, D.A.1
Bapteste, E.2
Kamekura, M.3
Doolittle, W.F.4
-
60
-
-
27844577665
-
Recombination shapes the natural population structure of the hyperthermophilic archaeon Sulfolobus islandicus
-
Whitaker RJ, Grogan DW, Taylor JW. (2005). Recombination shapes the natural population structure of the hyperthermophilic archaeon Sulfolobus islandicus. Mol Biol Evol 22: 2354-2361
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2354-2361
-
-
Whitaker, R.J.1
Grogan, D.W.2
Taylor, J.W.3
-
61
-
-
84866772472
-
Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla
-
Wrighton KC, Thomas BC, Sharon I, Miller CS, Castelle CJ, VerBerkmoes NC, et al. (2012). Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science 337: 1661-1665
-
(2012)
Science
, vol.337
, pp. 1661-1665
-
-
Wrighton, K.C.1
Thomas, B.C.2
Sharon, I.3
Miller, C.S.4
Castelle, C.J.5
VerBerkmoes, N.C.6
|