Alternation of gut microbiota in patients with pulmonary tuberculosis

Frontiers in Physiology

Volumn 8, Issue NOV, 2017, Pages

  Luo, Mei ^a,b   Liu, Yong ^b   Wu, Pengfei ^a   Luo, Dong Xia ^b   Sun, Qun ^a   Zheng, Han ^a   Hu, Richard ^c   Pandol, Stephen J ^d   Li, Qing Feng ^b   Han, Yuan Ping ^a   Zeng, Yilan ^b  

^a SICHUAN UNIVERSITY   (China)

^b Public Health and Clinical Center of Chengdu   (China)

^c OLIVE VIEW UCLA MEDICAL CENTER   (United States)

^d CEDARS SINAI MEDICAL CENTER   (United States)

Author keywords

Gut microbiota; Microbial diversity; Mycobacterium tuberculosis; New tuberculosis; Pulmonary tuberculosis; Recurrent tuberculosis

Indexed keywords

RIBOSOME RNA;

ADAPTIVE IMMUNITY; ADOLESCENT; ADULT; AGED; ARTICLE; BIODIVERSITY; BODY MASS; CD4+ T LYMPHOCYTE; CLINICAL ARTICLE; CONTROLLED STUDY; FEMALE; HIGH THROUGHPUT SEQUENCING; HOMEOSTASIS; HUMAN; IMMUNOREGULATION; INTESTINE FLORA; LUNG TUBERCULOSIS; MALE; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MIDDLE AGED; MYCOBACTERIUM TUBERCULOSIS; OUTCOME ASSESSMENT; POPULATION ABUNDANCE; PREVOTELLA; PRINCIPAL COMPONENT ANALYSIS; SEQUENCE ALIGNMENT; TAXONOMY; YOUNG ADULT;

EID: 85034429877     PISSN: None     EISSN: 1664042X     Source Type: Journal    
DOI: 10.3389/fphys.2017.00822     Document Type: Article

References (25)

1. Asarat, M., Apostolopoulos, V., Vasiljevic, T., and Donkor, O. (2016). Short-chain fatty acids regulate cytokines and Th17/Treg cells in human peripheral blood mononuclear cells in vitro. Immunol. Invest. 45, 205-222. doi: 10.3109/08820139.2015.1122613
2. Backhed, F., Ley, R. E., Sonnenburg, J. L., Peterson, D. A., and Gordon, J. I. (2005). Host-bacterial mutualism in the human intestine. Science 307, 1915-1920. doi: 10.1126/science.1104816
3. Berni Canani, R., Di Costanzo, M., and Leone, L. (2012). The epigenetic effects of butyrate: potential therapeutic implications for clinical practice. Clin. Epigenetics 4:4. doi: 10.1186/1868-7083-4-4
4. Cheung, M. K., Lam, W. Y., Fung, W. Y., Law, P. T., Au, C. H., Nong, W., et al. (2013). Sputum microbiota in tuberculosis as revealed by 16S rRNA pyrosequencing. PLoS ONE 8:e54574. doi: 10.1371/journal.pone.0054574
5. Correa-Oliveira, R., Fachi, J. L., Vieira, A., Sato, F. T., and Vinolo, M. A. (2016). Regulation of immune cell function by short-chain fatty acids. Clin. Transl. Immunol. 5:e73. doi: 10.1038/cti.2016.17
6. Cui, Z., Zhou, Y., Li, H., Zhang, Y., Zhang, S., Tang, S., et al. (2012). Complex sputum microbial composition in patients with pulmonary tuberculosis. BMC Microbiol. 12:276. doi: 10.1186/1471-2180-12-276
7. Duncan, S. H., Belenguer, A., Holtrop, G., Johnstone, A. M., Flint, H. J., and Lobley, G. E. (2007). Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces. Appl. Environ. Microbiol. 73, 1073-1078. doi: 10.1128/AEM.02340-06
8. Grice, E. A., and Segre, J. A. (2012). The human microbiome: our second genome. Annu. Rev. Genomics Hum. Genet. 13, 151-170. doi: 10.1146/annurev-genom-090711-163814
9. Khan, N., Vidyarthi, A., Nadeem, S., Negi, S., Nair, G., and Agrewala, J. N. (2016). Alteration in the gut microbiota provokes susceptibility to tuberculosis. Front. Immunol. 7:529. doi: 10.3389/fimmu.2016.00529
10. Lachmandas, E., van den Heuvel, C. N. A. M., Damen, M. S., Cleophas, M. C., Netea, M. G., and van Crevel, R. (2016). Diabetes mellitus and increased tuberculosis susceptibility: the role of short-chain fatty acids. J. Diabetes Res. 2016:6014631. doi: 10.1155/2016/6014631
11. Larsen, N., Vogensen, F. K., van den Berg, F. W., Nielsen, D. S., Andreasen, A. S., Pedersen, B. K., et al. (2010). Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults. PLoS ONE 5:e9085. doi: 10.1371/journal.pone.0009085
12. Ley, R. E., Backhed, F., Turnbaugh, P., Lozupone, C. A., Knight, R. D., and Gordon, J. I. (2005). Obesity alters gut microbial ecology. Proc. Natl. Acad. Sci. U.S.A. 102, 11070-11075. doi: 10.1073/pnas.0504978102
13. Lin, M. Y., de Zoete, M. R., van Putten, J. P., and Strijbis, K. (2015). Redirection of epithelial immune responses by short-chain fatty acids through inhibition of histone deacetylases. Front. Immunol. 6:554. doi: 10.3389/fimmu.2015.00554
14. Lu, Y., Fan, C., Li, P., Lu, Y., Chang, X., and Qi, K. (2016). Short chain fatty acids prevent high-fat-diet-induced obesity in mice by regulating G protein-coupled receptors and gut microbiota. Sci. Rep. 6:37589. doi: 10.1038/srep37589
15. Macpherson, A. J., and Harris, N. L. (2004). Interactions between commensal intestinal bacteria and the immune system. Nat. Rev. Immunol. 4, 478-485. doi: 10.1038/nri1373
16. Majlessi, L., Sayes, F., Bureau, J. F., Pawlik, A., Michel, V., Jouvion, G., et al. (2017). Colonization with Helicobacter is concomitant with modified gut microbiota and drastic failure of the immune control of Mycobacterium tuberculosis. Mucosal Immunol. 10, 1178-1189. doi: 10.1038/mi.2016.140
17. Maslowski, K. M., Vieira, A. T., Ng, A., Kranich, J., Sierro, F., Yu, D., et al. (2009). Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43. Nature 461, 1282-1286. doi: 10.1038/nature08530
18. Qin, N., Yang, F., Li, A., Prifti, E., Chen, Y., Shao, L., et al. (2014). Alterations of the human gut microbiome in liver cirrhosis. Nature 513, 59-64. doi: 10.1038/nature13568
19. Roy, C. C., Kien, C. L., Bouthillier, L., and Levy, E. (2006). Short-chain fatty acids: ready for prime time? Nutr. Clin. Pract. 21, 351-366. doi: 10.1177/0115426506021004351
20. Schauber, J., Svanholm, C., Termen, S., Iffland, K., Menzel, T., Scheppach, W., et al. (2003). Expression of the cathelicidin LL-37 is modulated by short chain fatty acids in colonocytes: relevance of signalling pathways. Gut 52, 735-741. doi: 10.1136/gut.52.5.735
21. Su, D., Nie, Y., Zhu, A., Chen, Z., Wu, P., Zhang, L., et al. (2016). Vitamin D signaling through induction of paneth cell defensins maintains gut microbiota and improves metabolic disorders and hepatic steatosis in animal models. Front. Physiol. 7:498. doi: 10.3389/fphys.2016.00498
22. Tuberculosis Programme and World Health Organization (2015). Guidelines on the Management of Latent Tuberculosis Infection. Geneva: World Health Organization
23. Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., et al. (2009). A core gut microbiome in obese and lean twins. Nature 457, 480-484. doi: 10.1038/nature07540
24. Winglee, K., Eloe-Fadrosh, E., Gupta, S., Guo, H., Fraser, C., and Bishai, W. (2014). Aerosol Mycobacterium tuberculosis infection causes rapid loss of diversity in gut microbiota. PLoS ONE 9:e97048. doi: 10.1371/journal.pone.0097048
25. Wu, J., Liu, W., He, L., Huang, F., Chen, J., Cui, P., et al. (2013). Sputum microbiota associated with new, recurrent and treatment failure tuberculosis. PLoS ONE 8:e83445. doi: 10.1371/journal.pone.0083445