Development of a fluorescent probe-based recombinase polymerase amplification assay for rapid detection of Orf virus Veterinary DNA viruses

Virology Journal

Volumn 12, Issue 1, 2015, Pages

  Yang, Yang ^a   Qin, Xiaodong ^a   Wang, Guangxiang ^a   Zhang, Yuen ^a,b   Shang, Youjun ^a   Zhang, Zhidong ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Orf virus; Recombinase polymerase amplification assay; RPA assay; Small ruminants

Indexed keywords

VIRUS DNA; FLUORESCENT DYE; RECOMBINASE;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; CORRELATIONAL STUDY; DIAGNOSTIC TEST ACCURACY STUDY; FLUORESCENCE ANALYSIS; INTERMETHOD COMPARISON; INVESTIGATIVE PROCEDURES; LIMIT OF DETECTION; NONHUMAN; ORF VIRUS; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; RAPID TEST; RECOMBINASE POLYMERASE AMPLIFICATION ASSAY; SENSITIVITY AND SPECIFICITY; VIRUS DETECTION; VIRUS INFECTION; VIRUS STRAIN; ANIMAL; COMPARATIVE STUDY; CROSS REACTION; ECTHYMA, CONTAGIOUS; EVALUATION STUDY; GENETICS; GOAT; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR DIAGNOSIS; NUCLEIC ACID AMPLIFICATION; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; SHEEP; TIME FACTOR; VIROLOGY;

ANIMALS; CROSS REACTIONS; ECTHYMA, CONTAGIOUS; FLUORESCENT DYES; GOATS; MOLECULAR DIAGNOSTIC TECHNIQUES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; ORF VIRUS; REAL-TIME POLYMERASE CHAIN REACTION; RECOMBINASES; SENSITIVITY AND SPECIFICITY; SHEEP; TIME FACTORS;

EID: 84951804774     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/s12985-015-0440-z     Document Type: Article

References (25)

1. Wang G, Shang Y, Wang Y, Tian H, Liu X. Comparison of a loop-mediated isothermal amplification for orf virus with quantitative real-time PCR. Virol J. 2013;10:138.
2. Fernandez KH, Bream M, Ali MA, Krogmann T, Zhao H, Li Y, et al. Investigation of molluscum contagiosum virus, orf and other parapoxviruses in lymphomatoid papulosis. J Am Acad Dermatol. 2013;68:1046-7.
3. Delhon G, Tulman ER, Afonso CL, Lu Z, de la Concha-Bermejillo A, Lehmkuhl HD, et al. Genomes of the parapoxviruses ORF virus and bovine papular stomatitis virus. J Virol. 2004;78:168-77.
4. Li W, Hao W, Peng Y, Duan C, Tong C, Song D, et al. Comparative genomic sequence analysis of Chinese orf virus strain NA1/11 with other parapoxviruses. Arch Virol. 2015;160:253-66.
5. Bora DP, Venkatesan G, Bhanuprakash V, Balamurugan V, Prabhu M, Siva Sankar MS, et al. TaqMan real-time PCR assay based on DNA polymerase gene for rapid detection of Orf infection. J Virol Methods. 2011;178:249-52.
6. Mondal B, Bera AK, Hosamani M, Tembhurne PA, Bandyopadhyay SK. Detection of Orf virus from an outbreak in goats and its genetic relation with other parapoxviruses. Vet Res Commun. 2006;30:531-9.
7. Inoshima Y, Morooka A, Murakami K, Sentsui H. Simple preparation of parapoxvirus genome DNA for endonuclease analysis. Microbiol Immunol. 2000;44:69-72.
8. Yeruham I, Perl S, Abraham A. Orf infection in four sheep flocks. Vet J. 2000;160:74-6.
9. Haig DM. Orf virus infection and host immunity. Curr Opin Infect Dis. 2006;19:127-31.
10. Lederman ER, Austin C, Trevino I, Reynolds MG, Swanson H, Cherry B, et al. ORF virus infection in children: clinical characteristics, transmission, diagnostic methods, and future therapeutics. Pediatr Infect Dis J. 2007;26:740-4.
11. Parida M, Sannarangaiah S, Dash PK, Rao PV, Morita K. Loop mediated isothermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases. Rev Med Virol. 2008;18:407-21.
12. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, et al. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000;28, E63.
13. Dukes JP, King DP, Alexandersen S. Novel reverse transcription loop-mediated isothermal amplification for rapid detection of foot-and-mouth disease virus. Arch Virol. 2006;151:1093-106.
14. Wei H, Zeng J, Deng C, Zheng C, Zhang X, Ma D, et al. A novel method of real-time reverse-transcription loop-mediated isothermal amplification developed for rapid and quantitative detection of human astrovirus. J Virol Methods. 2013;188:126-31.
15. Liu J, Nian QG, Li J, Hu Y, Li XF, Zhang Y, et al. Development of reverse-transcription loop-mediated isothermal amplification assay for rapid detection of novel avian influenza A (H7N9) virus. BMC Microbiol. 2014;14:271.
16. Abd El Wahed A, El-Deeb A, El-Tholoth M, Abd El Kader H, Ahmed A, Hassan S, et al. A portable reverse transcription recombinase polymerase amplification assay for rapid detection of foot-and-mouth disease virus. PLoS One. 2013;8:e71642.
17. Escadafal C, Faye O, Sall AA, Weidmann M, Strohmeier O, von Stetten F, et al. Rapid molecular assays for the detection of yellow fever virus in low-resource settings. PLoS Negl Trop Dis. 2014;8, e2730.
18. Xia X, Yu Y, Weidmann M, Pan Y, Yan S, Wang Y. Rapid detection of shrimp white spot syndrome virus by real time, isothermal recombinase polymerase amplification assay. PLoS One. 2014;9, e104667.
19. Liljander A, Yu M, O'Brien E, Heller M, Nepper JF, Weibel DB, et al. A field-applicable recombinase polymerase amplification assay for rapid detection of Mycoplasma capricolum subsp. capripneumoniae. J Clin Microbiol. 2015;53(9):2810-5.
20. Abd El Wahed A, Patel P, Faye O, Thaloengsok S, Heidenreich D, Matangkasombut P, et al. Recombinase Polymerase Amplification Assay for Rapid Diagnostics of Dengue Infection. PLoS One. 2015;10:e0129682.
21. Boyle DS, Lehman DA, Lillis L, Peterson D, Singhal M, Armes N, et al. Rapid detection of HIV-1 proviral DNA for early infant diagnosis using recombinase polymerase amplification. MBio. 2013;4.
22. Gallina L, Dal Pozzo F, Mc Innes CJ, Cardeti G, Guercio A, Battilani M, et al. A real time PCR assay for the detection and quantification of orf virus. J Virol Methods. 2006;134:140-5.
23. Venkatesan G, Bhanuprakash V, Balamurugan V. Development and comparative evaluation of loop mediated isothermal amplification (LAMP) assay for simple visual detection of orf virus in sheep and goats. Mol Cell Probes. 2015;29:193-5.
24. Jaroenram W, Owens L. Separation of endogenous viral elements from infectious Penaeus stylirostris densovirus using recombinase polymerase amplification. Mol Cell Probes. 2014;28:284-7.
25. Yongkiettrakul S, Jaroenram W, Arunrut N, Chareanchim W, Pannengpetch S, Suebsing R, et al. Application of loop-mediated isothermal amplification assay combined with lateral flow dipstick for detection of Plasmodium falciparum and Plasmodium vivax. Parasitol Int. 2014;63:777-84.