메뉴 건너뛰기




Volumn 64, Issue 2, 2015, Pages 286-296

LAMP assay and rapid sample preparation method for on-site detection of flavescence dorée phytoplasma in grapevine

Author keywords

flavescence dor e; Homogenization; Loop mediated isothermal amplification; On site application; Validation

Indexed keywords

CANDIDATUS PHYTOPLASMA; VITIS;

EID: 84924548880     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/ppa.12266     Document Type: Article
Times cited : (73)

References (32)
  • 1
    • 0034930308 scopus 로고    scopus 로고
    • Flavescence dorée in France and Italy: occurrence of closely related phytoplasma isolates and their near relationships to Palatine grapevine yellows and an alder yellows phytoplasma
    • Angelini E, Clair D, Borgo M, Bertaccini A, Boudon-Padieu E, 2001. Flavescence dorée in France and Italy: occurrence of closely related phytoplasma isolates and their near relationships to Palatine grapevine yellows and an alder yellows phytoplasma. Vitis 40, 79-86.
    • (2001) Vitis , vol.40 , pp. 79-86
    • Angelini, E.1    Clair, D.2    Borgo, M.3    Bertaccini, A.4    Boudon-Padieu, E.5
  • 2
    • 43149117657 scopus 로고    scopus 로고
    • Translocation of apple proliferation phytoplasma via natural root grafts - a case study
    • Baric S, Kerschbamer C, Vigl J, Dalla Via J, 2008. Translocation of apple proliferation phytoplasma via natural root grafts - a case study. European Journal of Plant Pathology 121, 207-11.
    • (2008) European Journal of Plant Pathology , vol.121 , pp. 207-211
    • Baric, S.1    Kerschbamer, C.2    Vigl, J.3    Dalla Via, J.4
  • 3
    • 79952088007 scopus 로고    scopus 로고
    • Use of a real-time LAMP isothermal assay for detecting 16SrII and XII phytoplasmas in fruit and weeds of the Ethiopian Rift Valley
    • Bekele B, Hodgetts J, Tomlinson J et al., 2011. Use of a real-time LAMP isothermal assay for detecting 16SrII and XII phytoplasmas in fruit and weeds of the Ethiopian Rift Valley. Plant Pathology 60, 345-55.
    • (2011) Plant Pathology , vol.60 , pp. 345-355
    • Bekele, B.1    Hodgetts, J.2    Tomlinson, J.3
  • 4
    • 12144255033 scopus 로고    scopus 로고
    • Detection of phytoplasmas associated with grapevine flavescence dorée disease using real-time PCR
    • Bianco PA, Casati P, Marziliano N, 2004. Detection of phytoplasmas associated with grapevine flavescence dorée disease using real-time PCR. Journal of Plant Pathology 86, 257-61.
    • (2004) Journal of Plant Pathology , vol.86 , pp. 257-261
    • Bianco, P.A.1    Casati, P.2    Marziliano, N.3
  • 5
    • 1642565081 scopus 로고    scopus 로고
    • Development of a real-time RT-PCR assay for the detection of Potato spindle tuber viroid
    • Boonham N, Gonzalez Perez L, Mendez MS et al., 2004. Development of a real-time RT-PCR assay for the detection of Potato spindle tuber viroid. Journal of Virological Methods 116, 139-46.
    • (2004) Journal of Virological Methods , vol.116 , pp. 139-146
    • Boonham, N.1    Gonzalez Perez, L.2    Mendez, M.S.3
  • 6
    • 77956673889 scopus 로고    scopus 로고
    • MIQE précis: practical implementation of minimum standard guidelines for fluorescence-based quantitative real-time PCR experiments
    • Bustin SA, Beaulieu J-F, Huggett J et al., 2010. MIQE précis: practical implementation of minimum standard guidelines for fluorescence-based quantitative real-time PCR experiments. BMC Molecular Biology 11, 74.
    • (2010) BMC Molecular Biology , vol.11 , pp. 74
    • Bustin, S.A.1    Beaulieu, J.-F.2    Huggett, J.3
  • 7
    • 0142060033 scopus 로고    scopus 로고
    • A multiplex nested-PCR assay for sensitive and simultaneous detection and direct identification of phytoplasma in the Elm yellows group and Stolbur group and its use in survey of grapevine yellows in France
    • Clair D, Larrue J, Aubert G, Cloquemin G, Boudon-Padieu E, 2003. A multiplex nested-PCR assay for sensitive and simultaneous detection and direct identification of phytoplasma in the Elm yellows group and Stolbur group and its use in survey of grapevine yellows in France. Vitis 42, 151-7.
    • (2003) Vitis , vol.42 , pp. 151-157
    • Clair, D.1    Larrue, J.2    Aubert, G.3    Cloquemin, G.4    Boudon-Padieu, E.5
  • 8
    • 0038805241 scopus 로고    scopus 로고
    • Seasonal distribution of phytoplasmas in Australian grapevines
    • Constable FE, Gibb KS, Symons RH, 2003. Seasonal distribution of phytoplasmas in Australian grapevines. Plant Pathology 52, 267-76.
    • (2003) Plant Pathology , vol.52 , pp. 267-276
    • Constable, F.E.1    Gibb, K.S.2    Symons, R.H.3
  • 9
    • 0030756442 scopus 로고    scopus 로고
    • Detection and differentiation of grapevine yellows phytoplasmas belonging to the elm yellows group and to the stolbur subgroup by PCR amplification of non-ribosomal DNA
    • Daire X, Clair D, Reinert W, Boudon-Padieu E, 1997. Detection and differentiation of grapevine yellows phytoplasmas belonging to the elm yellows group and to the stolbur subgroup by PCR amplification of non-ribosomal DNA. European Journal of Plant Pathology 103, 507-14.
    • (1997) European Journal of Plant Pathology , vol.103 , pp. 507-514
    • Daire, X.1    Clair, D.2    Reinert, W.3    Boudon-Padieu, E.4
  • 10
    • 0000479431 scopus 로고
    • Isolation of plant DNA from fresh tissue
    • Doyle JJ, Doyle JL, 1990. Isolation of plant DNA from fresh tissue. Focus 12, 15.
    • (1990) Focus , vol.12 , pp. 15
    • Doyle, J.J.1    Doyle, J.L.2
  • 11
    • 36849093394 scopus 로고    scopus 로고
    • Grapevine flavescence dorée phytoplasma PM 7/79
    • EPPO, 2007. Grapevine flavescence dorée phytoplasma PM 7/79. EPPO Bulletin 37, 536-42.
    • (2007) EPPO Bulletin , vol.37 , pp. 536-542
  • 12
    • 77951243500 scopus 로고    scopus 로고
    • Specific requirements for laboratories preparing accreditation for a plant pest diagnostic activity PM7/98
    • EPPO, 2010. Specific requirements for laboratories preparing accreditation for a plant pest diagnostic activity PM7/98. EPPO Bulletin 40, 5-22.
    • (2010) EPPO Bulletin , vol.40 , pp. 5-22
  • 13
    • 84907817865 scopus 로고    scopus 로고
    • EPPO database on quarantine pests. Accessed 10 March 2014.
    • EPPO, 2014. PQR - EPPO database on quarantine pests. EPPO database on quarantine pests. [http://www.eppo.int/DATABASES/pqr/pqr.htm]. Accessed 10 March 2014.
    • (2014) PQR - EPPO database on quarantine pests
  • 14
    • 79955045388 scopus 로고    scopus 로고
    • Robustness of a loop-mediated isothermal amplification reaction for diagnostic applications
    • Francois P, Tangomo M, Hibbs J et al., 2011. Robustness of a loop-mediated isothermal amplification reaction for diagnostic applications. FEMS Immunology and Medical Microbiology 62, 41-8.
    • (2011) FEMS Immunology and Medical Microbiology , vol.62 , pp. 41-48
    • Francois, P.1    Tangomo, M.2    Hibbs, J.3
  • 16
    • 80054850289 scopus 로고    scopus 로고
    • Development of rapid in-field loop-mediated isothermal amplification (LAMP) assays for phytoplasmas
    • Hodgetts J, Tomlinson J, Boonham N et al., 2011. Development of rapid in-field loop-mediated isothermal amplification (LAMP) assays for phytoplasmas. Bulletin of Insectology 64, 41-2.
    • (2011) Bulletin of Insectology , vol.64 , pp. 41-42
    • Hodgetts, J.1    Tomlinson, J.2    Boonham, N.3
  • 17
    • 34548583459 scopus 로고    scopus 로고
    • Real-time PCR detection systems for Flavescence dorée and Bois noir phytoplasmas in grapevine: comparison with conventional PCR detection and application in diagnostics
    • Hren M, Boben J, Rotter A, Kralj P, Gruden K, Ravnikar M, 2007. Real-time PCR detection systems for Flavescence dorée and Bois noir phytoplasmas in grapevine: comparison with conventional PCR detection and application in diagnostics. Plant Pathology 56, 785-96.
    • (2007) Plant Pathology , vol.56 , pp. 785-796
    • Hren, M.1    Boben, J.2    Rotter, A.3    Kralj, P.4    Gruden, K.5    Ravnikar, M.6
  • 19
    • 1842527861 scopus 로고    scopus 로고
    • Classification of phytoplasma strains in the elm yellows group (16SrV) and proposal of 'Candidatus Phytoplasma ulmi' for the phytoplasma associated with elm yellows
    • Lee I-M, Martini M, Marcone C, Zhu SF, 2004. Classification of phytoplasma strains in the elm yellows group (16SrV) and proposal of 'Candidatus Phytoplasma ulmi' for the phytoplasma associated with elm yellows. International Journal of Systematic and Evolutionary Microbiology 54, 337-47.
    • (2004) International Journal of Systematic and Evolutionary Microbiology , vol.54 , pp. 337-347
    • Lee, I.-M.1    Martini, M.2    Marcone, C.3    Zhu, S.F.4
  • 20
    • 84883742451 scopus 로고    scopus 로고
    • Fast real-time detection of Potato spindle tuber viroid by RT-LAMP
    • Lenarčič R, Morisset D, Mehle N, Ravnikar M, 2012. Fast real-time detection of Potato spindle tuber viroid by RT-LAMP. Plant Pathology 62, 1147-56.
    • (2012) Plant Pathology , vol.62 , pp. 1147-1156
    • Lenarčič, R.1    Morisset, D.2    Mehle, N.3    Ravnikar, M.4
  • 21
    • 0036598014 scopus 로고    scopus 로고
    • Genetic variability among flavescence dorée phytoplasmas from different origins in Italy and France
    • Martini M, Botti S, Marcone C et al., 2002. Genetic variability among flavescence dorée phytoplasmas from different origins in Italy and France. Molecular and Cellular Probes 16, 197-208.
    • (2002) Molecular and Cellular Probes , vol.16 , pp. 197-208
    • Martini, M.1    Botti, S.2    Marcone, C.3
  • 22
    • 0035698628 scopus 로고    scopus 로고
    • Optimization of a one-step PCR assay for the diagnosis of Flavescence dorée-related phytoplasmas in field-grown grapevines and vector populations
    • Marzachi C, Palermo S, Boarino A et al., 2001. Optimization of a one-step PCR assay for the diagnosis of Flavescence dorée-related phytoplasmas in field-grown grapevines and vector populations. Vitis 40, 213-7.
    • (2001) Vitis , vol.40 , pp. 213-217
    • Marzachi, C.1    Palermo, S.2    Boarino, A.3
  • 23
    • 80054872981 scopus 로고    scopus 로고
    • The first detection of a phytoplasma from the 16SrV (Elm yellows) group in the mosaic leafhopper Orientus ishidae
    • Mehle N, Seljak G, Rupar M, Ravnikar M, Dermastia M, 2010. The first detection of a phytoplasma from the 16SrV (Elm yellows) group in the mosaic leafhopper Orientus ishidae. New Disease Reports 22, 11.
    • (2010) New Disease Reports , vol.22 , pp. 11
    • Mehle, N.1    Seljak, G.2    Rupar, M.3    Ravnikar, M.4    Dermastia, M.5
  • 25
    • 84934442351 scopus 로고    scopus 로고
    • A real-time PCR detection system for the bois noir and flavescence dorée phytoplasmas and quantification of the target DNA
    • In: Dickinson M, Hodgetts J, eds. . London, UK: Humana Press
    • Mehle N, Prezelj N, Hren M et al., 2013a. A real-time PCR detection system for the bois noir and flavescence dorée phytoplasmas and quantification of the target DNA. In: Dickinson M, Hodgetts J, eds. Phytoplasma Methods and Protocols. London, UK: Humana Press, 253-68.
    • (2013) Phytoplasma Methods and Protocols , pp. 253-268
    • Mehle, N.1    Prezelj, N.2    Hren, M.3
  • 26
    • 84934440775 scopus 로고    scopus 로고
    • Automated DNA extraction for large numbers of plant samples
    • In: Dickinson M, Hodgetts J, eds. . London, UK: Humana Press
    • Mehle N, Nikolić P, Rupar M, Boben J, Ravnikar M, Dermastia M, 2013b. Automated DNA extraction for large numbers of plant samples. In: Dickinson M, Hodgetts J, eds. Phytoplasma Methods and Protocols. London, UK: Humana Press, 139-45.
    • (2013) Phytoplasma Methods and Protocols , pp. 139-145
    • Mehle, N.1    Nikolić, P.2    Rupar, M.3    Boben, J.4    Ravnikar, M.5    Dermastia, M.6
  • 27
    • 77956060080 scopus 로고    scopus 로고
    • A panel of real-time PCR assays for specific detection of three phytoplasmas from the apple proliferation group
    • Nikolić P, Mehle N, Gruden K, Ravnikar M, Dermastia M, 2010. A panel of real-time PCR assays for specific detection of three phytoplasmas from the apple proliferation group. Molecular and Cellular Probes 24, 303-9.
    • (2010) Molecular and Cellular Probes , vol.24 , pp. 303-309
    • Nikolić, P.1    Mehle, N.2    Gruden, K.3    Ravnikar, M.4    Dermastia, M.5
  • 29
    • 57049113703 scopus 로고    scopus 로고
    • Loop mediated isothermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases
    • Parida M, Sannarangaiah S, Dash PK, Rao PVL, Morita K, 2008. Loop mediated isothermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases. Reviews in Medical Virology 18, 407-21.
    • (2008) Reviews in Medical Virology , vol.18 , pp. 407-421
    • Parida, M.1    Sannarangaiah, S.2    Dash, P.K.3    Rao, P.V.L.4    Morita, K.5
  • 31
    • 77953706027 scopus 로고    scopus 로고
    • Development and evaluation of a one-hour DNA extraction and loop-mediated isothermal amplification assay for rapid detection of phytoplasmas
    • Tomlinson JA, Boonham N, Dickinson M, 2010a. Development and evaluation of a one-hour DNA extraction and loop-mediated isothermal amplification assay for rapid detection of phytoplasmas. Plant Pathology 59, 465-71.
    • (2010) Plant Pathology , vol.59 , pp. 465-471
    • Tomlinson, J.A.1    Boonham, N.2    Dickinson, M.3
  • 32
    • 75949094540 scopus 로고    scopus 로고
    • Rapid detection of Phytophthora ramorum and P. kernoviae by two-minute DNA extraction followed by isothermal amplification and amplicon detection by generic lateral flow device
    • Tomlinson JA, Dickinson MJ, Boonham N, 2010b. Rapid detection of Phytophthora ramorum and P. kernoviae by two-minute DNA extraction followed by isothermal amplification and amplicon detection by generic lateral flow device. Phytopathology 100, 143-9.
    • (2010) Phytopathology , vol.100 , pp. 143-149
    • Tomlinson, J.A.1    Dickinson, M.J.2    Boonham, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.