메뉴 건너뛰기




Volumn 9, Issue 11, 2017, Pages 1363-1371

The correlation of methylation levels measured using Illumina 450K and EPIC BeadChips in blood samples

Author keywords

DNA methylation; HumanMethylation450 BeadChip; Illumina Infinium; Infinium MethylationEPIC BeadChip; intraclass correlation

Indexed keywords

DNA; BIOLOGICAL MARKER;

EID: 85032456997     PISSN: 17501911     EISSN: 1750192X     Source Type: Journal    
DOI: 10.2217/epi-2017-0078     Document Type: Article
Times cited : (99)

References (28)
  • 1
    • 84962545867 scopus 로고    scopus 로고
    • Validation of a DNA methylation microarray for 850,000 CpG sites of the human genome enriched in enhancer sequences
    • Moran S, Arribas C, Esteller M. Validation of a DNA methylation microarray for 850,000 CpG sites of the human genome enriched in enhancer sequences. Epigenomics 8(3), 389-399 (2016).
    • (2016) Epigenomics , vol.8 , Issue.3 , pp. 389-399
    • Moran, S.1    Arribas, C.2    Esteller, M.3
  • 2
    • 84990856282 scopus 로고    scopus 로고
    • Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling
    • Pidsley R, Zotenko E, Peters TJ et al. Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling. Genome Biol. 17(1), 208 (2016).
    • (2016) Genome Biol. , vol.17 , Issue.1 , pp. 208
    • Pidsley, R.1    Zotenko, E.2    Peters, T.J.3
  • 3
    • 85016938751 scopus 로고    scopus 로고
    • Validation of the MethylationEPIC BeadChip for fresh-frozen and formalin-fixed paraffin-embedded tumours
    • Kling T, Wenger A, Beck S, Caren H. Validation of the MethylationEPIC BeadChip for fresh-frozen and formalin-fixed paraffin-embedded tumours. Clin. Epigenetics 9, 33 (2017).
    • (2017) Clin. Epigenetics , vol.9 , pp. 33
    • Kling, T.1    Wenger, A.2    Beck, S.3    Caren, H.4
  • 4
    • 84958917148 scopus 로고    scopus 로고
    • SKA2 methylation is associated with decreased prefrontal cortical thickness and greater PTSD severity among trauma-exposed veterans
    • Sadeh N, Spielberg JM, Logue MW et al. SKA2 methylation is associated with decreased prefrontal cortical thickness and greater PTSD severity among trauma-exposed veterans. Mol. Psychiatry 21(3), 357-363 (2016).
    • (2016) Mol. Psychiatry , vol.21 , Issue.3 , pp. 357-363
    • Sadeh, N.1    Spielberg, J.M.2    Logue, M.W.3
  • 5
    • 85023187412 scopus 로고    scopus 로고
    • Epigenome-wide association of PTSD from heterogeneous cohorts with a common multi-site analysis pipeline
    • (Epub ahead of print)
    • Ratanatharathorn A, Boks M, Aiello A et al. Epigenome-wide association of PTSD from heterogeneous cohorts with a common multi-site analysis pipeline. Am. J. Med. Genet. B Neuropsychiatr. Genet. doi:10.1002/ajmg.b.32568 (2017) (Epub ahead of print).
    • (2017) Am. J. Med. Genet. B Neuropsychiatr. Genet.
    • Ratanatharathorn, A.1    Boks, M.2    Aiello, A.3
  • 7
    • 84874353239 scopus 로고    scopus 로고
    • Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
    • Chen YA, Lemire M, Choufani S et al. Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray. Epigenetics 8(2), 203-209 (2013).
    • (2013) Epigenetics , vol.8 , Issue.2 , pp. 203-209
    • Chen, Y.A.1    Lemire, M.2    Choufani, S.3
  • 8
    • 84872564830 scopus 로고    scopus 로고
    • A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450k DNA methylation data
    • Teschendorff AE, Marabita F, Lechner M et al. A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450k DNA methylation data. Bioinformatics 29(2), 189-196 (2013).
    • (2013) Bioinformatics , vol.29 , Issue.2 , pp. 189-196
    • Teschendorff, A.E.1    Marabita, F.2    Lechner, M.3
  • 9
    • 84862266444 scopus 로고    scopus 로고
    • Complete pipeline for Infinium(R - ) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation
    • Touleimat N, Tost J. Complete pipeline for Infinium(R - ) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation. Epigenomics 4(3), 325-341 (2012).
    • (2012) Epigenomics , vol.4 , Issue.3 , pp. 325-341
    • Touleimat, N.1    Tost, J.2
  • 11
    • 33845432928 scopus 로고    scopus 로고
    • Adjusting batch effects in microarray expression data using empirical Bayes methods
    • Johnson WE, Li C, Rabinovic A. Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 8(1), 118-127 (2007).
    • (2007) Biostatistics , vol.8 , Issue.1 , pp. 118-127
    • Johnson, W.E.1    Li, C.2    Rabinovic, A.3
  • 13
    • 84893192328 scopus 로고    scopus 로고
    • Accounting for cellular heterogeneity is critical in epigenome-wide association studies
    • Jaffe AE, Irizarry RA. Accounting for cellular heterogeneity is critical in epigenome-wide association studies. Genome Biol. 15(2), R31 (2014).
    • (2014) Genome Biol. , vol.15 , Issue.2 , pp. R31
    • Jaffe, A.E.1    Irizarry, R.A.2
  • 14
    • 85003550816 scopus 로고    scopus 로고
    • DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
    • Ligthart S, Marzi C, Aslibekyan S et al. DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases. Genome Biol. 17(1), 255 (2016).
    • (2016) Genome Biol. , vol.17 , Issue.1 , pp. 255
    • Ligthart, S.1    Marzi, C.2    Aslibekyan, S.3
  • 15
    • 84886111619 scopus 로고    scopus 로고
    • DNA methylation age of human tissues and cell types
    • Horvath S. DNA methylation age of human tissues and cell types. Genome Biol. 14(10), R115 (2013).
    • (2013) Genome Biol. , vol.14 , Issue.10 , pp. R115
    • Horvath, S.1
  • 16
    • 84872806231 scopus 로고    scopus 로고
    • Genome-wide methylation profiles reveal quantitative views of human aging rates
    • Hannum G, Guinney J, Zhao L et al. Genome-wide methylation profiles reveal quantitative views of human aging rates. Mol. Cell 49(2), 359-367 (2013).
    • (2013) Mol. Cell , vol.49 , Issue.2 , pp. 359-367
    • Hannum, G.1    Guinney, J.2    Zhao, L.3
  • 17
    • 48249135129 scopus 로고    scopus 로고
    • Reliability and statistical power: How measurement fallibility affects power and required sample sizes for several parametric and nonparametric statistics
    • Kanyongo GY, Brook GP, Kyei-Blankson L, Gocmen G. Reliability and statistical power: how measurement fallibility affects power and required sample sizes for several parametric and nonparametric statistics. J. Modern Appl. Stat. Methods 6(1), 81-90 (2007).
    • (2007) J. Modern Appl. Stat. Methods , vol.6 , Issue.1 , pp. 81-90
    • Kanyongo, G.Y.1    Brook, G.P.2    Kyei-Blankson, L.3    Gocmen, G.4
  • 18
    • 0011544035 scopus 로고
    • Effect of reliability and validity on power of statistical tests
    • Cleary TA, Linn RL, Walster GW. Effect of reliability and validity on power of statistical tests. Sociol. Methodol. 2, 130-138 (1970).
    • (1970) Sociol. Methodol. , vol.2 , pp. 130-138
    • Cleary, T.A.1    Linn, R.L.2    Walster, G.W.3
  • 19
    • 77951846108 scopus 로고    scopus 로고
    • A statistical method for excluding non-variable CpG sites in high-throughput DNA methylation profiling
    • Meng H, Joyce AR, Adkins DE et al. A statistical method for excluding non-variable CpG sites in high-throughput DNA methylation profiling. BMC Bioinformatics 11, 227 (2010).
    • (2010) BMC Bioinformatics , vol.11 , pp. 227
    • Meng, H.1    Joyce, A.R.2    Adkins, D.E.3
  • 20
    • 33644649616 scopus 로고    scopus 로고
    • High-throughput DNA methylation profiling using universal bead arrays
    • Bibikova M, Lin Z, Zhou L et al. High-throughput DNA methylation profiling using universal bead arrays. Genome Res. 16(3), 383-393 (2006).
    • (2006) Genome Res. , vol.16 , Issue.3 , pp. 383-393
    • Bibikova, M.1    Lin, Z.2    Zhou, L.3
  • 21
    • 34548131197 scopus 로고    scopus 로고
    • Epigenetic specificity of loss of imprinting of the IGF2 gene in Wilms tumors
    • Bjornsson HT, Brown LJ, Fallin MD et al. Epigenetic specificity of loss of imprinting of the IGF2 gene in Wilms tumors. J. Natl Cancer Inst. 99(16), 1270-1273 (2007).
    • (2007) J. Natl Cancer Inst. , vol.99 , Issue.16 , pp. 1270-1273
    • Bjornsson, H.T.1    Brown, L.J.2    Fallin, M.D.3
  • 22
    • 85014094972 scopus 로고    scopus 로고
    • A methodological study of genome-wide DNA methylation analyses using matched archival formalin-fixed paraffin embedded and fresh frozen breast tumors
    • Espinal AC, Wang D, Yan L et al. A methodological study of genome-wide DNA methylation analyses using matched archival formalin-fixed paraffin embedded and fresh frozen breast tumors. Oncotarget 8(9), 14821-14829 (2017).
    • (2017) Oncotarget , vol.8 , Issue.9 , pp. 14821-14829
    • Espinal, A.C.1    Wang, D.2    Yan, L.3
  • 23
    • 85010888461 scopus 로고    scopus 로고
    • Epigenome-wide association study of body mass index, and the adverse outcomes of adiposity
    • Wahl S, Drong A, Lehne B et al. Epigenome-wide association study of body mass index, and the adverse outcomes of adiposity. Nature 541(7635), 81-86 (2017).
    • (2017) Nature , vol.541 , Issue.7635 , pp. 81-86
    • Wahl, S.1    Drong, A.2    Lehne, B.3
  • 24
    • 85021729996 scopus 로고    scopus 로고
    • Epigenome-wide association study of chronic obstructive pulmonary disease and lung function in Koreans
    • Lee MK, Hong Y, Kim SY, Kim WJ, London SJ. Epigenome-wide association study of chronic obstructive pulmonary disease and lung function in Koreans. Epigenomics 9(7), 971-984 (2017).
    • (2017) Epigenomics , vol.9 , Issue.7 , pp. 971-984
    • Lee, M.K.1    Hong, Y.2    Kim, S.Y.3    Kim, W.J.4    London, S.J.5
  • 25
    • 85014809929 scopus 로고    scopus 로고
    • Epigenome-wide association study reveals differential DNA methylation in individuals with a history of myocardial infarction
    • Rask-Andersen M, Martinsson D, Ahsan M et al. Epigenome-wide association study reveals differential DNA methylation in individuals with a history of myocardial infarction. Hum. Mol. Genet. 25(21), 4739-4748 (2016).
    • (2016) Hum. Mol. Genet. , vol.25 , Issue.21 , pp. 4739-4748
    • Rask-Andersen, M.1    Martinsson, D.2    Ahsan, M.3
  • 26
    • 84973279140 scopus 로고    scopus 로고
    • Association of DNA methylation differences with schizophrenia in an epigenome-wide association study
    • Montano C, Taub MA, Jaffe A et al. Association of DNA methylation differences with schizophrenia in an epigenome-wide association study. JAMA Psychiatry 73(5), 506-514 (2016).
    • (2016) JAMA Psychiatry , vol.73 , Issue.5 , pp. 506-514
    • Montano, C.1    Taub, M.A.2    Jaffe, A.3
  • 27
    • 85010867790 scopus 로고    scopus 로고
    • Epigenome-wide association study of DNA methylation in panic disorder
    • Shimada-Sugimoto M, Otowa T, Miyagawa T et al. Epigenome-wide association study of DNA methylation in panic disorder. Clin. Epigenetics 9, 6 (2017).
    • (2017) Clin. Epigenetics , vol.9 , pp. 6
    • Shimada-Sugimoto, M.1    Otowa, T.2    Miyagawa, T.3
  • 28
    • 84962265047 scopus 로고    scopus 로고
    • CpGFilter: Model-based CpG probe filtering with replicates for epigenome-wide association studies
    • Chen J, Just AC, Schwartz J et al. CpGFilter: model-based CpG probe filtering with replicates for epigenome-wide association studies. Bioinformatics 32(3), 469-471 (2016).
    • (2016) Bioinformatics , vol.32 , Issue.3 , pp. 469-471
    • Chen, J.1    Just, A.C.2    Schwartz, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.