-
1
-
-
38349100549
-
Epigenetic events in mammalian germcell development: reprogramming and beyond
-
Sasaki H, Matsui Y. Epigenetic events in mammalian germcell development: reprogramming and beyond. Nature reviews Genetics. 2008; 9:129-140.
-
(2008)
Nature reviews Genetics
, vol.9
, pp. 129-140
-
-
Sasaki, H.1
Matsui, Y.2
-
2
-
-
34249275353
-
Phenotypic plasticity and the epigenetics of human disease
-
Feinberg AP. Phenotypic plasticity and the epigenetics of human disease. Nature. 2007; 447:433-440.
-
(2007)
Nature
, vol.447
, pp. 433-440
-
-
Feinberg, A.P.1
-
3
-
-
79960927422
-
Increased methylation variation in epigenetic domains across cancer types
-
Hansen KD, Timp W, Bravo HC, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D, Briem E, Zhang K, Irizarry RA, et al. Increased methylation variation in epigenetic domains across cancer types. Nature genetics. 2011; 43:768-775.
-
(2011)
Nature genetics
, vol.43
, pp. 768-775
-
-
Hansen, K.D.1
Timp, W.2
Bravo, H.C.3
Sabunciyan, S.4
Langmead, B.5
McDonald, O.G.6
Wen, B.7
Wu, H.8
Liu, Y.9
Diep, D.10
Briem, E.11
Zhang, K.12
Irizarry, R.A.13
-
4
-
-
84885660033
-
Differentially methylated loci distinguish ovarian carcinoma histological types: evaluation of a DNA methylation assay in FFPE tissue
-
Kelemen LE, Kobel M, Chan A, Taghaddos S, Dinu I. Differentially methylated loci distinguish ovarian carcinoma histological types: evaluation of a DNA methylation assay in FFPE tissue. BioMed research international. 2013; 2013:815894.
-
(2013)
BioMed research international
, vol.2013
-
-
Kelemen, L.E.1
Kobel, M.2
Chan, A.3
Taghaddos, S.4
Dinu, I.5
-
5
-
-
58249098396
-
Quantitative analysis of DNA methylation profiles in lung cancer identifies aberrant DNA methylation of specific genes and its association with gender and cancer risk factors
-
Vaissiere T, Hung RJ, Zaridze D, Moukeria A, Cuenin C, Fasolo V, Ferro G, Paliwal A, Hainaut P, Brennan P, Tost J, Boffetta P, Herceg Z. Quantitative analysis of DNA methylation profiles in lung cancer identifies aberrant DNA methylation of specific genes and its association with gender and cancer risk factors. Cancer research. 2009; 69:243-252.
-
(2009)
Cancer research
, vol.69
, pp. 243-252
-
-
Vaissiere, T.1
Hung, R.J.2
Zaridze, D.3
Moukeria, A.4
Cuenin, C.5
Fasolo, V.6
Ferro, G.7
Paliwal, A.8
Hainaut, P.9
Brennan, P.10
Tost, J.11
Boffetta, P.12
Herceg, Z.13
-
6
-
-
79955675256
-
Diet induced epigenetic changes and their implications for health
-
McKay JA, Mathers JC. Diet induced epigenetic changes and their implications for health. Acta physiologica. 2011; 202:103-118.
-
(2011)
Acta physiologica
, vol.202
, pp. 103-118
-
-
McKay, J.A.1
Mathers, J.C.2
-
7
-
-
77955633914
-
Genome-wide DNA methylation analysis of archival formalin-fixed paraffin-embedded tissue using the Illumina Infinium HumanMethylation27 BeadChip
-
Thirlwell C, Eymard M, Feber A, Teschendorff A, Pearce K, Lechner M, Widschwendter M, Beck S. Genome-wide DNA methylation analysis of archival formalin-fixed paraffin-embedded tissue using the Illumina Infinium HumanMethylation27 BeadChip. Methods. 2010; 52:248-254.
-
(2010)
Methods
, vol.52
, pp. 248-254
-
-
Thirlwell, C.1
Eymard, M.2
Feber, A.3
Teschendorff, A.4
Pearce, K.5
Lechner, M.6
Widschwendter, M.7
Beck, S.8
-
8
-
-
84857217981
-
Interpretation of genome-wide infinium methylation data from ligated DNA in formalinfixed, paraffin-embedded paired tumor and normal tissue
-
Jasmine F, Rahaman R, Roy S, Raza M, Paul R, Rakibuz-Zaman M, Paul-Brutus R, Dodsworth C, Kamal M, Ahsan H, Kibriya MG. Interpretation of genome-wide infinium methylation data from ligated DNA in formalinfixed, paraffin-embedded paired tumor and normal tissue. BMC research notes. 2012; 5:117.
-
(2012)
BMC research notes
, vol.5
, pp. 117
-
-
Jasmine, F.1
Rahaman, R.2
Roy, S.3
Raza, M.4
Paul, R.5
Rakibuz-Zaman, M.6
Paul-Brutus, R.7
Dodsworth, C.8
Kamal, M.9
Ahsan, H.10
Kibriya, M.G.11
-
9
-
-
84901752771
-
Validation of DNA methylation profiling in formalinfixed paraffin-embedded samples using the Infinium HumanMethylation450 Microarray
-
Moran S, Vizoso M, Martinez-Cardus A, Gomez A, Matias-Guiu X, Chiavenna SM, Fernandez AG, Esteller M. Validation of DNA methylation profiling in formalinfixed paraffin-embedded samples using the Infinium HumanMethylation450 Microarray. Epigenetics. 2014; 9.
-
(2014)
Epigenetics
, pp. 9
-
-
Moran, S.1
Vizoso, M.2
Martinez-Cardus, A.3
Gomez, A.4
Matias-Guiu, X.5
Chiavenna, S.M.6
Fernandez, A.G.7
Esteller, M.8
-
10
-
-
84893860385
-
Genome-wide methylation patterns provide insight into differences in breast tumor biology between American women of African and European ancestry
-
Ambrosone CB, Young AC, Sucheston LE, Wang D, Yan L, Liu S, Tang L, Hu Q, Freudenheim JL, Shields PG, Morrison CD, Demissie K, Higgins MJ. Genome-wide methylation patterns provide insight into differences in breast tumor biology between American women of African and European ancestry. Oncotarget. 2014; 5:237-248. doi: 10.18632/oncotarget.1599.
-
(2014)
Oncotarget
, vol.5
, pp. 237-248
-
-
Ambrosone, C.B.1
Young, A.C.2
Sucheston, L.E.3
Wang, D.4
Yan, L.5
Liu, S.6
Tang, L.7
Hu, Q.8
Freudenheim, J.L.9
Shields, P.G.10
Morrison, C.D.11
Demissie, K.12
Higgins, M.J.13
-
11
-
-
84933052832
-
Formalin-fixed, paraffinembedded (FFPE) tissue epigenomics using Infinium HumanMethylation450 BeadChip assays
-
de Ruijter TC, de Hoon JP, Slaats J, de Vries B, Janssen MJ, van Wezel T, Aarts MJ, van Engeland M, Tjan-Heijnen VC, Van Neste L, Veeck J. Formalin-fixed, paraffinembedded (FFPE) tissue epigenomics using Infinium HumanMethylation450 BeadChip assays. Laboratory investigation. 2015.
-
(2015)
Laboratory investigation
-
-
de Ruijter, T.C.1
de Hoon, J.P.2
Slaats, J.3
de Vries, B.4
Janssen, M.J.5
van Wezel, T.6
Aarts, M.J.7
van Engeland, M.8
Tjan-Heijnen, V.C.9
Van Neste, L.10
Veeck, J.11
-
12
-
-
84899934660
-
Genome-wide DNA methylation analysis of formalin-fixed paraffin embedded colorectal cancer tissue
-
Dumenil TD, Wockner LF, Bettington M, McKeone DM, Klein K, Bowdler LM, Montgomery GW, Leggett BA, Whitehall VL. Genome-wide DNA methylation analysis of formalin-fixed paraffin embedded colorectal cancer tissue. Genes, chromosomes & cancer. 2014; 53:537-548.
-
(2014)
Genes, chromosomes & cancer
, vol.53
, pp. 537-548
-
-
Dumenil, T.D.1
Wockner, L.F.2
Bettington, M.3
McKeone, D.M.4
Klein, K.5
Bowdler, L.M.6
Montgomery, G.W.7
Leggett, B.A.8
Whitehall, V.L.9
-
13
-
-
84872508256
-
OSAT: a tool for sample-to-batch allocations in genomics experiments
-
Yan L, Ma C, Wang D, Hu Q, Qin M, Conroy JM, Sucheston LE, Ambrosone CB, Johnson CS, Wang J, Liu S. OSAT: a tool for sample-to-batch allocations in genomics experiments. BMC genomics. 2012; 13:689.
-
(2012)
BMC genomics
, vol.13
, pp. 689
-
-
Yan, L.1
Ma, C.2
Wang, D.3
Hu, Q.4
Qin, M.5
Conroy, J.M.6
Sucheston, L.E.7
Ambrosone, C.B.8
Johnson, C.S.9
Wang, J.10
Liu, S.11
-
14
-
-
84862173149
-
SWAN: Subsetquantile within array normalization for illumina infinium HumanMethylation450 BeadChips
-
Maksimovic J, Gordon L, Oshlack A. SWAN: Subsetquantile within array normalization for illumina infinium HumanMethylation450 BeadChips. Genome biology. 2012; 13:R44.
-
(2012)
Genome biology
, vol.13
, pp. R44
-
-
Maksimovic, J.1
Gordon, L.2
Oshlack, A.3
-
15
-
-
33845432928
-
Adjusting batch effects in microarray expression data using empirical Bayes methods
-
Johnson WE, Li C, Rabinovic A. Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics. 2007; 8:118-127.
-
(2007)
Biostatistics
, vol.8
, pp. 118-127
-
-
Johnson, W.E.1
Li, C.2
Rabinovic, A.3
-
16
-
-
84859098571
-
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
-
Leek JT, Johnson WE, Parker HS, Jaffe AE, Storey JD. The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinformatics. 2012; 28:882-883.
-
(2012)
Bioinformatics
, vol.28
, pp. 882-883
-
-
Leek, J.T.1
Johnson, W.E.2
Parker, H.S.3
Jaffe, A.E.4
Storey, J.D.5
-
17
-
-
84867251760
-
Illuminating potential technical artifacts of DNA-methylation array probes
-
Blair JD, Price EM. Illuminating potential technical artifacts of DNA-methylation array probes. American journal of human genetics. 2012; 91:760-762.
-
(2012)
American journal of human genetics
, vol.91
, pp. 760-762
-
-
Blair, J.D.1
Price, E.M.2
-
18
-
-
84875491176
-
On the analysis of the illumina 450k array data: probes ambiguously mapped to the human genome
-
Zhang X, Mu W, Zhang W. On the analysis of the illumina 450k array data: probes ambiguously mapped to the human genome. Frontiers in genetics. 2012; 3:73.
-
(2012)
Frontiers in genetics
, vol.3
, pp. 73
-
-
Zhang, X.1
Mu, W.2
Zhang, W.3
-
19
-
-
84874353239
-
Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
-
Chen YA, Lemire M, Choufani S, Butcher DT, Grafodatskaya D, Zanke BW, Gallinger S, Hudson TJ, Weksberg R. Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray. Epigenetics. 2013; 8:203-209.
-
(2013)
Epigenetics
, vol.8
, pp. 203-209
-
-
Chen, Y.A.1
Lemire, M.2
Choufani, S.3
Butcher, D.T.4
Grafodatskaya, D.5
Zanke, B.W.6
Gallinger, S.7
Hudson, T.J.8
Weksberg, R.9
-
20
-
-
67149130298
-
Admixture mapping of 15,280 African Americans identifies obesity susceptibility loci on chromosomes 5 and X
-
Cheng CY, Kao WH, Patterson N, Tandon A, Haiman CA, Harris TB, Xing C, John EM, Ambrosone CB, Brancati FL, Coresh J, Press MF, Parekh RS, et al. Admixture mapping of 15,280 African Americans identifies obesity susceptibility loci on chromosomes 5 and X. PLoS genetics. 2009; 5:e1000490.
-
(2009)
PLoS genetics
, vol.5
-
-
Cheng, C.Y.1
Kao, W.H.2
Patterson, N.3
Tandon, A.4
Haiman, C.A.5
Harris, T.B.6
Xing, C.7
John, E.M.8
Ambrosone, C.B.9
Brancati, F.L.10
Coresh, J.11
Press, M.F.12
Parekh, R.S.13
-
21
-
-
84903388112
-
Associations between estrogen receptor-negative breast cancer and timing of reproductive events differ between African American and European American women
-
Ambrosone CB, Zirpoli GR, Bovbjerg DH, Shankar J, Hong CC, McCann SE, Ruszczyk M, Khoury T, Yao S, Ciupak GL, Jandorf L, Pawlish KS, Bandera EV. Associations between estrogen receptor-negative breast cancer and timing of reproductive events differ between African American and European American women. Cancer epidemiology, biomarkers & prevention. 2014; 23:1115-1120.
-
(2014)
Cancer epidemiology, biomarkers & prevention
, vol.23
, pp. 1115-1120
-
-
Ambrosone, C.B.1
Zirpoli, G.R.2
Bovbjerg, D.H.3
Shankar, J.4
Hong, C.C.5
McCann, S.E.6
Ruszczyk, M.7
Khoury, T.8
Yao, S.9
Ciupak, G.L.10
Jandorf, L.11
Pawlish, K.S.12
Bandera, E.V.13
-
22
-
-
72449186679
-
Conducting Molecular Epidemiological Research in the Age of HIPAA: A Multi-Institutional Case-Control Study of Breast Cancer in African-American and European-American Women
-
Ambrosone CB, Ciupak GL, Bandera EV, Jandorf L, Bovbjerg DH, Zirpoli G, Pawlish K, Godbold J, Furberg H, Fatone A, Valdimarsdottir H, Yao S, Li Y, et al. Conducting Molecular Epidemiological Research in the Age of HIPAA: A Multi-Institutional Case-Control Study of Breast Cancer in African-American and European-American Women. Journal of oncology. 2009; 2009:871250.
-
(2009)
Journal of oncology
, vol.2009
-
-
Ambrosone, C.B.1
Ciupak, G.L.2
Bandera, E.V.3
Jandorf, L.4
Bovbjerg, D.H.5
Zirpoli, G.6
Pawlish, K.7
Godbold, J.8
Furberg, H.9
Fatone, A.10
Valdimarsdottir, H.11
Yao, S.12
Li, Y.13
|