Global spread of hemorrhagic fever viruses: Predicting pandemics

Methods in Molecular Biology

Volumn 1604, Issue , 2018, Pages 3-31

  Gonzalez, Jean Paul ^a,b   Souris, Marc ^c   Valdivia Granda, Willy ^d  

^a KANSAS STATE UNIVERSITY   (United States)

^b Health for Development Inc   (France)

^c IRD   (Laos)

^d Orion Integrated Biosciences Inc   (United States)

Author keywords

Global biosecurity; Pandemic; Predicting epidemic risk (i.e., pathogenic threat and vulnerability); Viral hemorrhagic fever

Indexed keywords

AFRICA; ARENAVIRUS; BIOSURVEILLANCE; CHIKUNGUNYA; CHIKUNGUNYA VIRUS; CRIMEAN CONGO HEMORRHAGIC FEVER; CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS; DENGUE HEMORRHAGIC FEVER; DENGUE VIRUS; DISEASE SURVEILLANCE; DISEASE TRANSMISSION; DNA SEQUENCE; EBOLAVIRUS; EMERGENCY CARE; ENVIRONMENTAL FACTOR; EPIDEMIC; FUNDING; GEOGRAPHIC INFORMATION SYSTEM; HANTAAN VIRUS; HANTAVIRUS INFECTION; HEALTH CARE POLICY; HEMORRHAGIC FEVER; HENDRA VIRUS; HUMAN; INFECTION RISK; INFLUENZA VIRUS; JUNIN VIRUS; KYASANUR FOREST DISEASE; LYMPHOCYTIC CHORIOMENINGITIS VIRUS; MARBURGVIRUS; NEXT GENERATION SEQUENCING; NIPAH VIRUS; NONHUMAN; OMSK HEMORRHAGIC FEVER; PANDEMIC; PREDICTION; PREVENTIVE MEDICINE; PUUMALA VIRUS; RIFT VALLEY FEVER; RIFT VALLEY FEVER VIRUS; RISK ASSESSMENT; SEVERE ACUTE RESPIRATORY SYNDROME; TICK BORNE ENCEPHALITIS VIRUS; VIRUS; VIRUS TRANSMISSION; WEST NILE FEVER; WEST NILE VIRUS; WESTERN HEMISPHERE; YELLOW FEVER; YELLOW FEVER VIRUS; ZIKA FEVER; COMMUNICABLE DISEASE; GENETICS; GLOBAL HEALTH; HIGH THROUGHPUT SEQUENCING; PROCEDURES; TRANSMISSION; VIRUS HEMORRHAGIC FEVER;

COMMUNICABLE DISEASES; GEOGRAPHIC INFORMATION SYSTEMS; GLOBAL HEALTH; HEMORRHAGIC FEVERS, VIRAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS;

EID: 85030767515     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-6981-4_1     Document Type: Chapter

References (72)

1. Dawson PM et al (2015) Epidemic predictions in an imperfect world: modelling disease spread with partial data. Proc R Soc B 282(1808):20150205
2. Debré P, Gonzalez JP (2013) Vie et mort des epidémies. O J Med, p 285
3. Beeching NJ, Dance DAB, Miller ARO, Spencer RC (2002) Biological warfare and bioterrorism. Br Med J 324(7333):336–339
4. Thucydides (2016) The history of the Peloponnesian War (english trans. by Richard Crawley). The Internet classics archive. http://classics.mit.edu//pelopwar.html
5. Biraben JN (1995) Les maladies en Europe: équilibre et ruptures de la pathocénose. In: MD Grmek (ed) Histoire de la pensée médicale en Occident, t.1, Seuil, 1995, p. 283–310.
6. Berche P (2012) Faut-il encore avoir peur de la grippe. Histoire des pandémies, Odile Jacob 2012:80–81
7. Littman RJ, Littman ML (1973) Galen and the Antonine plague author(s). The Am Jof Philol 94(3):243–255
8. Grmek MD (1997) Histoire de la Pensée Médicale en occident—tome 2, de la renaissance aux Lumières. Le Seuil, Paris
9. Fenner F (1988) Smallpox and its eradication (history of international public health, no 6). World Health Organization,Geneva
10. Stanley M, et al. (2010) The smallpox pandemic of 1870–1874.
11. Simmons BJ, Falto-Aizpurua LA, Griffith RD, Nouri K (2015) Smallpox: 12,000 years from plagues to eradication: a dermatologic ailment shaping the face of society. JAMA Dermatol 151(5):521. doi:10.1001/jamadermatol.2014.4812
12. Ferguson NM et al (2006) Strategies for mitigating an influenza pandemic. Nature 442 (7101):448–452
13. Gubler DJ (2011) Dengue, urbanization and globalization: the unholy trinity of the 21st century. Trop Med Health 39(4 Suppl):3–11. doi:10.2149/tmh.2011S05
14. Hughes JM (2004) SARS: an emerging global microbial threat. Trans Am Clin Climatol Assoc 115:361–372. discussion 372–374
15. Valdano E et al (2015) Predicting epidemic risk from past temporal contact data. PLoS Comput Biol 11(3):1004152
16. Bellan SE, Pulliam JR, Dushoff J, Meyers LA (2014) Ebola control: effect of asymptomatic infection and acquired immunity. Lancet 384(9953):1499–1500. doi:10.1016/S0140-6736(14)61839-0
17. Akerlund E, Prescott J, Tampellini L (2015) Shedding of Ebola virus in an asymptomatic pregnant woman. N Engl J Med 372(25):2467–2469. doi:10.1056/NEJMc1503275
18. Wauquier N, Bangura J, Moses L, Humarr Khan S, Coomber M, Lungay V, Gbakie M, Sesay MS, Gassama IA, Massally JL, Gbakima A, Squire J, Lamin M, Kanneh L, Yillah M, Kargbo K, Roberts W, Vandi M, Kargbo D, Vincent T, Jambai A, Guttieri M, Fair J, Souris M, Gonzalez JP (2015) Understanding the emergence of Ebola virus disease in sierra leone: stalking the virus in the threatening wake of emergence. PLoS Curr 2015; 7:pii: ecurrents.outbreaks.9a6530ab7bb9096b34143230ab01cdef. doi:10.1371/currents.outbreaks.9a6530ab7bb9096b34143230ab01cdef
19. Spengler JR, Ervin ED, Towner JS, Rollin PE, Nichol ST (2016) Perspectives on West Africa Ebola virus disease outbreak, 2013–2016. Emerg Infect Dis 22(6):956–963. doi:10.3201/eid2206.160021
20. Reiter P (1998) Aedes alpobictus and the world trade in used tires, 1988–1995: the shape of things to come? J Am Mosq Control Assoc 14:83–94
21. Gonzalez JP, Prugnolle F, Leroy E (2013) Men, primates, and germs: an ongoing affair. Curr Top Microbiol Immunol 365:337–353. doi:10.1007/82_2012_304
22. Yashina LN, Abramov SA, Gutorov VV, Dupal TA, Krivopalov AV, Panov VV, Danchinova GA, Vinogradov VV, Luchnikova EM, Hay J, Kang HJ, and Yanagihara R (2010) Seewis virus: phylogeography of a Shrew-Borne hantavirus in Siberia, Russia. Vector Borne Zoonotic Dis 10(6):585–591. doi:10.1089/vbz. 2009.0154 PMCID: PMC2979336
23. Gonzalez JP (1996) Coevolution of rodent and viruses: arenaviruses and hantaviruses. In:M. Ali Ozcel (ed) New dimension in parasitology. Acta Parasitol Turcica 20(Supp 1): 617–638
24. Gonzalez JP, Jean MD (1999) The arenavirus and rodent coevolution process: a global view of a theory. In: JF Saluzzo, B Dodet (eds) Factors in the Emergence and control of rodent-borne diseases. Elsevier, Paris, pp 39–42
25. Drexler JF, Seelen A, Corman VM, Fumie Tateno A, Cottontail V, Melim Zerbinati R, Gloza-Rausch F, Klose S, Adu-Sarkodie Y, Oppong SK, EKV K, Osterman A, Rasche A, Adam A, Müller MA, Ulrich RG, Leroy EM, Lukashev AN, Drosten C (2012) Bats worldwide carry hepatitis E virus-related viruses that form a putative novel genus within the family Hepeviridae. J Virol 86(17):9134–9147. doi:10.1128/JVI.00800-12
26. Grard G, Fair JN, Lee D, Slikas E, Steffen I, Muyembe JJ, Sittler T, Veeraraghavan N, Ruby JG, Wang C, Makuwa M, Mulembakani P, Tesh RB, Mazet J, Rimoin AW, Taylor T, Schneider BS, Simmons G, Delwart E, Wolfe ND, Chiu CY, Leroy EM (2012) A novel rhabdovirus associated with acute hemorrhagic fever in Central Africa. PLoS Pathog 8(9): 1002924
27. Federal Select Agent program: Select Agent and toxins list. http://www.selectagents.gov/SelectAgentsandToxinsList.html. Accessed Aug 2016
28. WHO recommended surveillance standards WHO/CDS/CSR/ISR/99.2 http://www.who.int/csr/resources/publications/surveillance/whocdscsrisr992syn.pdf. Accessed Aug
29. Paessler S, Walker DH (2013) Pathogenesis of the viral hemorrhagic fevers. Annu Rev Pathol 8:411–440. doi:10.1146/annurev-pathol-020712-164041
30. Oldstone M (2009) Viruses, plagues, and history: past, present and future. Oxford University Press, Oxford, pp 102–104
31. WHO (2014) Yellow fever fact sheet N°100. World Health Organization, Geneva
32. Garske T, Van Kerkhove MD, Yactayo S, Ronveaux O, Lewis RF et al (2014) Yellow fever in Africa: estimating the burden of disease and impact of mass vaccination from outbreak and serological data. PLoS Med 11(5):e1001638. doi:10.1371/journal.pmed.1001638
33. Gubler DJ (2004) The changing epidemiology of yellow fever and dengue, 1900 to 2003: full circle? Comp Immunol Microbiol Infect Dis 27(5):319–330
34. Grobbelaar AA, Weyer J, Moolla N, Jansen-van-Vuren P, Moises F, Paweska JT (2016) Resurgence of yellow fever in Angola, 2015–2016. Emerg Infect Dis 22(10):1854–1855. doi:10.3201/eid2210.160818
35. Simons H, Patel D (2016) International health regulations in practice: focus on yellow fever and poliomyelitis. Hum Vaccin Immunother 12(10):2690–2693
36. Burki T (2016) Yellow fever in Africa: a disaster waiting to happen. Lancet Infect Dis 16(8):896–897. doi:10.1016/S1473-3099(16)30224-9
37. Gubler DJ, Clark GG (1995) Dengue/dengue hemorrhagic fever: the emergence of a global health problem. Emerg Infect Dis 1(2):55–57
38. Delaporte (1874) Rapp. au ministre de la marine. J offic 2 avr 1874, p. 2546, 2e col
39. LeDuc JW, Esteves K, Gratz NG (2004) Dengue and dengue haemorrhagic fever. In: Murray CJ, Lopez AD, Mathers CD (eds) The global epidemiology of infectious diseases, Global burden of disease and injury series, vol 4. World Health Organization, Geneva, pp 219–242
40. Gubler DJ (1988) Dengue. In: Monath TPM (ed) Epidemiology of arthropod-borne viral disease. CRC Press, Boca Raton (FL), pp 223–260
41. Halstead SB (1992) The XXth century dengue pandemic: need for surveillance and research. Rapp Trimest Statist Sanit Mondo 45: 292–298
42. Gubler DJ, Trent DW (1994) Emergence of epidemic dengue/dengue hemorrhagic fever as a public health problem in the Americas. Infect Agents Dis 2:383–393
43. Siegert R, Shu HL, Slenczka W, Peters D, Müller G (2009) Zur Ätiologie einer unbekannten, von Affen ausgegangenen menschlichen Infektionskrankheit. Deutsch Med Wochensch 92(51):2341–2343. doi:10.1055/s-0028-1106144
44. Towner JS, Amman BR, Sealy TK, Carroll SAR, Comer JA, Kemp A, Swanepoel R, Paddock CD, Balinandi S, Khristova ML, Formenty PB, Albarino CG, Miller DM, Reed ZD, Kayiwa JT, Mills JN, Cannon DL, Greer PW, Byaruhanga E, Farnon EC, Atimnedi P, Okware S, Katongole-Mbidde E, Downing R, Tappero JW, Zaki SR, Ksiazek TG, Nichol ST, Rollin PE (2009) Isolation of genetically diverse Marburg viruses from Egyptian fruit bats. PLoS Pathog 5(7):1000536
45. Paweska JT, Jansen-Van-Vuren P, Masumu J, Leman PA, Grobbelaar AA, Birkhead M, Clift S, Swanepoel R, Kemp A (2012) Virological and serological findings in Rousettus aegyptiacus experimentally inoculated with vero cells-adapted hogan strain of Marburg virus. PLoS One 7(9):45479. doi:10.1371/journal.pone.0045479
46. Jean-Paul G, Herbreteau V, Morvan J, Leroy E (2005) Ebola virus circulation in. Africa: a balance between clinical expression and epidemiological silence. Bull Soc Pathol Exotiq 98(3):210–217
47. Leroy EM, Gonzalez JP, Baize S (2011) Ebola and Marburg haemorrhagic fever viruses: major scientific advances, but a relatively minor public health threat for Africa. Clin Microbiol Infect 17(7):964–976
48. Gostin LO, Lucey D, Phelan A (2014) The Ebola epidemic: a global health emergency. JAMA 312(11):1095–1096. doi:10.1001/jama.2014.11176
49. Kulzer P, Schäfer RM, Heidland A (1993) Hantavirus infections 1993: endemic or unrecognized pandemic? Dtsch Med Wochenschr 118(42):1546–1546
50. Johnson KM (2001) Hantaviruses: history and overview. Curr Top Microbiol Immunol 256(256): 1–14. doi:10.1007/978–3–642-56753-7_1
51. Gonzalez JP, McCormick JB, Baudon D, Gautun JP, Meunier DY, Dournon E, Georges AJ (1984) Serological evidence for Hantaan-related virus in Africa. Lancet 2: 1036–1037
52. Klempa B, Witkowski PT, Auste B, Koivogui L, Fichet-Calvet E, Strecker T, Ter Meulen J, Krüger DH (2012) Sangassou virus, the first hantavirus isolate from Africa, displays genetic and functional properties distinct from those of other murinae-associated hantaviruses. J Virol 86(7):3819–3827. doi:10.1128/JVI.05879-11
53. Radoshitzky SR, Bào Y, Buchmeier MJ, Charrel RN, Clawson AN, Clegg CS, DeRisi JL, Emonet S, Gonzalez JP, Kuhn JH, Lukashevich IS, Peters CJ, Romanowski V, Salvato MS, Stenglein MD, de la Torre JC (2015) Past, present, and future of arenavirus taxonomy. Arch Virol 160(7):1851–1874
54. Salazar-Bravo J, Dragoo JW, Bowen MD, Peters CJ, Ksiazek TG, Yates TL (2002) Natural nidality in Bolivian hemorrhagic fever and the systematics of the reservoir species.Infect Genet Evol 1(3):191–199
55. Medlock JM, Hansford KM, Bormane A et al (2013) Driving forces for changes in geographical distribution of Ixodes ricinus ticks in Europe. Parasit Vectors 6:1. doi:10.1186/1756-3305-6-1
56. Spengler JR, Bergeron É, Rollin PE (2016) Seroepidemiological studies of Crimean-Congo hemorrhagic fever virus in domestic and wild animals. PLoS Negl Trop Dis 10(1):e0004210. doi:10.1371/journal.pntd.0004210
57. Ergonul O (2012) Crimean-Congo hemorrhagic fever virus: new outbreaks, new discoveries. Curr Opin Virol 2:215–220. doi:10.1016/j.coviro.2012.03.001
58. Nanyingi MO, Munyua P, Kiama SG, Muchemi GM, Thumbi SM, Bitek AO, Bett B, Muriithi RM, Njenga MK (2015) A systematic review of rift valley fever epidemiology 1931–2014. Infect Ecol Epidemiol 5:28024
59. Soumahoro MK, Boelle PY, Gaüzere BA, Atsou K, Pelat C, Lambert B, La Ruche G, Gastellu-Etchegorry M, Renault P, Sarazin M, Yazdanpanah Y, Flahault A, Malvy D, Hanslik T (2011) The chikungunya epidemic on La Réunion Island in 2005–2006: a cost-of-illness study. PLoS Negl Trop Dis 5(6):e1197. doi:10.1371/journal.pntd.0001197
60. National Academies of Sciences, Engineering, and Medicine (2016) Global health risk framework: pandemic financing: workshop summary. The National Academies Press, Washington, DC. doi:10.17226/21855.
61. Beavogui M and Madsbjerg S. African risk capacity. Executive perspective: outbreak and epidemic insurance, new solution to an old problem. The Rockefeller Foundation, 27 Sept 2016. http://sustainability.thomsonreuters.com/2016/09/27/executive-perspective-outbreak-and-epidemic-insurance-new-solution-to-an-old-problem/. Accessed Aug 2016
62. Gonzalez JP. UNESCO. From the Ebola river to the Ebola virus disease pandemic: what have we learned? http://www.sciforum.hu/programme/speakers-and-abstracts/gonzalezjean-paul.html. Accessed Aug 2016
63. http://www.google.org/flutrends/about/. Accessed Aug 2016
64. Chan EH et al (2011) Using web search query data to monitor dengue epidemics: a new model for neglected tropical disease surveillance. PLoS Negl Trop Dis 5(5): e1206
65. Gluskin RT, Johansson MA, Santillana M, Brownstein JS (2014) Evaluation of internet-based dengue query data: google dengue trends. PLoS Negl Trop Dis 8(2):e2713. doi:10.1371/journal.pntd.0002713 http://www.worldwidewebsize.com. Accessed Aug 2016
66. Valdivia-Granda WA (2013) Biosurveillance enterprise for operational awareness, a genomic-based approach for tracking pathogen virulence. Virulence 4(8):745–751
67. Valdivia-Granda WA (2010) Bioinformatics for biodefense: challenges and opportunities. Biosec Bioterr Biodef Strat Pract Sci 8(1): 69–77
68. Gallego B et al (2009) Biosurveillance of emerging biothreats using scalable genotype clustering. J Biomed Inform 42(1):66–73
69. Ronald D, Fricker J, Banschbach D (2012) Optimizing biosurveillance systems that use threshold-based event detection methods. Inf Fusion 13(2):117–128
70. Valdivia-Granda W (2012) Biodefense oriented genomic-based pathogen classification systems: challenges and opportunities. J Bioterr Biodef 3(1):2–9
71. Jenkins WO et al. (2012) Biosurveillance observations on BioWatch generation-3 and other federal efforts: testimony before the subcommittees on emergency preparedness, response, and communications and Cybersecurity, infrastructure protection, and security technologies, committee on house homeland security, house of representatives, in testimony GAO-12-994 T. US Govt Accountability Office, Washington, DC
72. Jenkins WO, United States. Congress. House (2012) Committee on Homeland Security. Subcommittee on Emergency Preparedness Response and Communications., United States. Congress. House. Committee on Homeland Security. Subcommittee on Cybersecurity Infrastructure Protection and Security Technologies, United States. Government Accountability Office: Biosurveillance observations on BioWatch Generation-3 and other federal efforts: testimony before the Subcommittees on Emergency Preparedness, Response, and Communications and Cybersecurity, Infrastructure Protection, and Security Technologies, Committee on House Homeland Security, House of Representatives. In: Testimony GAO-12-994 T. U.S. Govt. Accountability Office, Washington, DC