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Volumn 34, Issue 10, 2017, Pages 2439-2452

Complex Patterns of Admixture across the Indonesian Archipelago

Author keywords

genetic admixture; genetic diversity; human migration; population structure

Indexed keywords

AGRICULTURAL WORKER; ARTICLE; BIODIVERSITY; EUROPE; GENETIC DRIFT; GENETIC SCREENING; GENETIC VARIABILITY; GENOME ANALYSIS; GENOTYPE; HAPLOTYPE; HOLOCENE; HUMAN; INDONESIAN; MIGRATION; NEOLITHIC; PACIFIC ISLANDS; PAPUA NEW GUINEA; PHILIPPINES; POPULATION; POPULATION STRUCTURE; SOUTHEAST ASIA; ASIA; ASIAN CONTINENTAL ANCESTRY GROUP; ETHNOLOGY; FAR EAST; GENETIC VARIATION; GENETICS; HUMAN GENOME; INDONESIA; ISLAND (GEOLOGICAL); MOLECULAR EVOLUTION; POPULATION GENETICS; PROCEDURES;

EID: 85030698321     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msx196     Document Type: Article
Times cited : (56)

References (64)
  • 1
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1, 092 human genomes
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium. 2012. An integrated map of genetic variation from 1, 092 human genomes. Nature, 491, 56-65.
    • (2012) Nature , vol.491 , pp. 56-65
  • 2
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander DH, Novembre J, Lange K. 2009. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19:1655-1664.
    • (2009) Genome Res. , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 3
    • 33847034067 scopus 로고    scopus 로고
    • The 'human revolution' in lowland tropical Southeast Asia: The antiquity and behavior of anatomically modern humans at Niah cave (Sarawak, Borneo)
    • Barker G, Barton H, Bird M, Daly P, Datan I, Dykes A, Farr L, Gilbertson D, Harrisson B, Hunt C, et al. 2007. The 'human revolution' in lowland tropical Southeast Asia: The antiquity and behavior of anatomically modern humans at Niah cave (Sarawak, Borneo). J Hum Evol. 52:243-261.
    • (2007) J Hum Evol. , vol.52 , pp. 243-261
    • Barker, G.1    Barton, H.2    Bird, M.3    Daly, P.4    Datan, I.5    Dykes, A.6    Farr, L.7    Gilbertson, D.8    Harrisson, B.9    Hunt, C.10
  • 4
    • 84978883727 scopus 로고    scopus 로고
    • Southeast Asian islands: Archaeology
    • In: Bellwood P, editor Hoboken: John Wiley and Sons Inc
    • Bellwood P. 2014. Southeast Asian islands: Archaeology. In: Bellwood P, editor. The global prehistory of human migration. Hoboken: John Wiley and Sons Inc.
    • (2014) The Global Prehistory of Human Migration
    • Bellwood, P.1
  • 6
    • 84856617527 scopus 로고    scopus 로고
    • Was there an Austroasiatic presence in Island Southeast Asia prior to the Austronesian expansion
    • Blench RM. 2010. Was there an Austroasiatic presence in Island Southeast Asia prior to the Austronesian expansion Bull Indo Pac Pre Hi 30:133-144.
    • (2010) Bull Indo Pac Pre Hi , vol.30 , pp. 133-144
    • Blench, R.M.1
  • 7
    • 84948684788 scopus 로고    scopus 로고
    • Southeast Asian islands and Oceania: Austronesian linguistic history
    • In: Bellwood P, editor Hoboken: John Wiley and Sons Inc
    • Blust R. 2014. Southeast Asian islands and Oceania: Austronesian linguistic history. In: Bellwood P, editor. The global prehistory of human migration. Hoboken: John Wiley and Sons Inc.
    • (2014) The Global Prehistory of Human Migration
    • Blust, R.1
  • 9
    • 84930213392 scopus 로고    scopus 로고
    • Second-generation PLINK: Rising to the challenge of larger and richer datasets
    • Chang C, Chow C, Tellier L, et al. 2015. Second-generation PLINK: Rising to the challenge of larger and richer datasets. Giga Science 4:7.
    • (2015) Giga Science , vol.4 , pp. 7
    • Chang, C.1    Chow, C.2    Tellier, L.3
  • 10
    • 84995400174 scopus 로고    scopus 로고
    • Small traditional human communities sustain genomic diversity over microgeographic scales despite linguistic isolation
    • Cox MP, Hudjashov G, Sim A, Savina O, Karafet TM, Sudoyo H, Lansing JS. 2016. Small traditional human communities sustain genomic diversity over microgeographic scales despite linguistic isolation. Mol Biol Evol. 33:2273-2284.
    • (2016) Mol Biol Evol. , vol.33 , pp. 2273-2284
    • Cox, M.P.1    Hudjashov, G.2    Sim, A.3    Savina, O.4    Karafet, T.M.5    Sudoyo, H.6    Lansing, J.S.7
  • 11
    • 84902504030 scopus 로고    scopus 로고
    • Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
    • 1000 Genomes Project Consortium
    • Delaneau O, Marchini J. 1000 Genomes Project Consortium. 2014. Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel. Nat Commun. 5:3934.
    • (2014) Nat Commun. , vol.5 , pp. 3934
    • Delaneau, O.1    Marchini, J.2
  • 12
    • 67650081136 scopus 로고    scopus 로고
    • Pre-Austronesian dispersal of banana cultivars west from New Guinea: Linguistic relics from eastern Indonesia
    • Denham T, Donohue M. 2009. Pre-Austronesian dispersal of banana cultivars west from New Guinea: Linguistic relics from eastern Indonesia. Archaeol Ocean 44:18-28.
    • (2009) Archaeol Ocean , vol.44 , pp. 18-28
    • Denham, T.1    Donohue, M.2
  • 14
    • 65849334032 scopus 로고    scopus 로고
    • Computational feature-sensitive reconstruction of language relationships: Developing the ALINE distance for comparative historical linguistic reconstruction
    • Downey SS, Hallmark B, Cox MP, Norquest P, Lansing JS. 2008. Computational feature-sensitive reconstruction of language relationships: Developing the ALINE distance for comparative historical linguistic reconstruction. J Quant Linguist. 15:340-369.
    • (2008) J Quant Linguist. , vol.15 , pp. 340-369
    • Downey, S.S.1    Hallmark, B.2    Cox, M.P.3    Norquest, P.4    Lansing, J.S.5
  • 15
    • 26044441323 scopus 로고    scopus 로고
    • Cross-cultural estimation of the human generation interval for use in genetics-based population divergence studies
    • Fenner JN. 2005. Cross-cultural estimation of the human generation interval for use in genetics-based population divergence studies. Am J Phys Anthropol. 128:415-423.
    • (2005) Am J Phys Anthropol. , vol.128 , pp. 415-423
    • Fenner, J.N.1
  • 17
    • 58849102142 scopus 로고    scopus 로고
    • Language phylogenies reveal expansion pulses and pauses in Pacific settlement
    • Gray RD, Drummond AJ, Greenhill SJ. 2009. Language phylogenies reveal expansion pulses and pauses in Pacific settlement. Science 323:479-483.
    • (2009) Science , vol.323 , pp. 479-483
    • Gray, R.D.1    Drummond, A.J.2    Greenhill, S.J.3
  • 18
    • 56849124020 scopus 로고    scopus 로고
    • The Austronesian basic vocabulary database: From bioinformatics to lexomics
    • Greenhill SJ, Blust R, Gray RD. 2008. The Austronesian basic vocabulary database: From bioinformatics to lexomics. Evol Bioinform Online 4:271-283.
    • (2008) Evol Bioinform Online , vol.4 , pp. 271-283
    • Greenhill, S.J.1    Blust, R.2    Gray, R.D.3
  • 21
    • 84959527996 scopus 로고    scopus 로고
    • Indonesia-unravelling the mystery of a nation
    • Horton R. 2016. Indonesia-unravelling the mystery of a nation. The Lancet 387:830.
    • (2016) The Lancet , vol.387 , pp. 830
    • Horton, R.1
  • 22
    • 80053176070 scopus 로고    scopus 로고
    • Detecting autozygosity through runs of homozygosity: A comparison of three autozygosity detection algorithms
    • Howrigan DP, Simonson MA, Keller MC. 2011. Detecting autozygosity through runs of homozygosity: A comparison of three autozygosity detection algorithms. BMC Genomics 12:460.
    • (2011) BMC Genomics , vol.12 , pp. 460
    • Howrigan, D.P.1    Simonson, M.A.2    Keller, M.C.3
  • 23
    • 72149083621 scopus 로고    scopus 로고
    • Mapping human genetic diversity in Asia
    • HUGO Pan-Asian SNP Consortium
    • HUGO Pan-Asian SNP Consortium. 2009. Mapping human genetic diversity in Asia. Science 326:1541-1545.
    • (2009) Science , vol.326 , pp. 1541-1545
  • 24
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • International Hap Map Consortium
    • International Hap Map Consortium. 2007. A second generation human haplotype map of over 3.1 million SNPs. Nature 449:851-861.
    • (2007) Nature , vol.449 , pp. 851-861
  • 25
    • 34547861256 scopus 로고    scopus 로고
    • CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    • Jakobsson M, Rosenberg NA. 2007. CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23:1801-1806.
    • (2007) Bioinformatics , vol.23 , pp. 1801-1806
    • Jakobsson, M.1    Rosenberg, N.A.2
  • 26
    • 84866609702 scopus 로고    scopus 로고
    • Evolutionary history of continental Southeast Asians: Early train" hypothesis based on genetic analysis of mitochondrial and autosomal DNA data
    • Jinam TA, Hong LC, Phipps ME, Stoneking M, Ameen M, Edo J, HUGO Pan-Asian SNP, Consortium, Saitou N. 2012. Evolutionary history of continental Southeast Asians: "Early train" hypothesis based on genetic analysis of mitochondrial and autosomal DNA data. Mol Biol Evol. 29:3513-3527.
    • (2012) Mol Biol Evol. , vol.29 , pp. 3513-3527
    • Jinam, T.A.1    Hong, L.C.2    Phipps, M.E.3    Stoneking, M.4    Ameen, M.5    Edo, J.6    Hugo Pan-Asian, S.N.P.7    Consortium Saitou, N.8
  • 34
    • 84857477622 scopus 로고    scopus 로고
    • Inference of population structure using dense haplotype data
    • Lawson DJ, Hellenthal G, Myers S, Falush D. 2012. Inference of population structure using dense haplotype data. PLo S Genet. 8:e1002453.
    • (2012) PLoS Genet. , vol.8 , pp. e1002453
    • Lawson, D.J.1    Hellenthal, G.2    Myers, S.3    Falush, D.4
  • 43
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • Nei M, Li WH. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA. 76:5269-5273.
    • (1979) Proc Natl Acad Sci USA. , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.H.2
  • 50
    • 85030716992 scopus 로고    scopus 로고
    • Available from
    • Pickrell J. 2015. MALDER [Internet]. Available from: Https://github.com/joepickrell/malder.
    • (2015) MALDER [Internet]
    • Pickrell, J.1
  • 51
    • 84925857970 scopus 로고    scopus 로고
    • Genome-wide insights into the genetic history of human populations
    • Pugach I, Stoneking M. 2015. Genome-wide insights into the genetic history of human populations. Investig Genet. 6:6.
    • (2015) Investig Genet. , vol.6 , pp. 6
    • Pugach, I.1    Stoneking, M.2
  • 53
    • 36849080837 scopus 로고    scopus 로고
    • GENEPOP'007: A complete re-implementation of the GENEPOP software for Windows and Linux
    • Rousset F. 2008. GENEPOP'007: A complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol Resour. 8:103-106.
    • (2008) Mol Ecol Resour. , vol.8 , pp. 103-106
    • Rousset, F.1
  • 54
    • 84931477808 scopus 로고    scopus 로고
    • Reconstructing past admixture processes from local genomic ancestry using wavelet transformation
    • Sanderson J, Sudoyo H, Karafet TM, Hammer MF, Cox MP. 2015. Reconstructing past admixture processes from local genomic ancestry using wavelet transformation. Genetics 200:469-481.
    • (2015) Genetics , vol.200 , pp. 469-481
    • Sanderson, J.1    Sudoyo, H.2    Karafet, T.M.3    Hammer, M.F.4    Cox, M.P.5
  • 55
    • 84941203081 scopus 로고    scopus 로고
    • The spatial mixing of genomes in secondary contact zones
    • Sedghifar A, Brandvain Y, Ralph P, Coop G. 2015. The spatial mixing of genomes in secondary contact zones. Genetics 201:243-261.
    • (2015) Genetics , vol.201 , pp. 243-261
    • Sedghifar, A.1    Brandvain, Y.2    Ralph, P.3    Coop, G.4
  • 58
    • 84997491565 scopus 로고    scopus 로고
    • Is the Neolithic spread in Island Southeast Asia really as confusing as the archaeologists (and some linguists) make it seem
    • In: Tjoa-Bonatz ML, Reinecke A, Bonatz D, editors Singapore: NUS Press
    • Spriggs M. 2012. Is the Neolithic spread in Island Southeast Asia really as confusing as the archaeologists (and some linguists) make it seem In: Tjoa-Bonatz ML, Reinecke A, Bonatz D, editors. Selected papers from the 13th international conference of the European Association of Southeast Asian archaeologists. Singapore: NUS Press.
    • (2012) Selected Papers from the 13th International Conference of the European Association of Southeast Asian Archaeologists
    • Spriggs, M.1
  • 61
    • 85006049525 scopus 로고    scopus 로고
    • Reconstructing demography and social behavior during the Neolithic expansion from genomic diversity across Island Southeast Asia
    • Vallee F, Luciani A, Cox MP. 2016. Reconstructing demography and social behavior during the Neolithic expansion from genomic diversity across Island Southeast Asia. Genetics 204:1495-1506.
    • (2016) Genetics , vol.204 , pp. 1495-1506
    • Vallee, F.1    Luciani, A.2    Cox, M.P.3
  • 64
    • 84858690407 scopus 로고    scopus 로고
    • Genetic dating indicates that the Asian-Papuan admixture through eastern Indonesia corresponds to the Austronesian expansion
    • HUGO Pan-Asian SNP Consortium 2012
    • Xu S, Pugach I, Stoneking M, Kayser M, Jin L, HUGO Pan-Asian SNP Consortium 2012. Genetic dating indicates that the Asian-Papuan admixture through eastern Indonesia corresponds to the Austronesian expansion. Proc Natl Acad Sci USA. 109:4574-4579.
    • Proc Natl Acad Sci USA. , vol.109 , pp. 4574-4579
    • Xu, S.1    Pugach, I.2    Stoneking, M.3    Kayser, M.4    Jin, L.5


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