메뉴 건너뛰기




Volumn 26, Issue 18, 2017, Pages 4700-4711

Genome scans on experimentally evolved populations reveal candidate regions for adaptation to plant resistance in the potato cyst nematode Globodera pallida

Author keywords

evolve and resequence; experimental evolution; Pool Seq; population genomics; selection; virulence

Indexed keywords

ANIMAL; BIOLOGICAL MODEL; DISEASE RESISTANCE; GENETICS; GENOMICS; PARASITOLOGY; PATHOGENICITY; POPULATION GENETICS; POTATO; SINGLE NUCLEOTIDE POLYMORPHISM; TYLENCHOIDEA; VIRULENCE;

EID: 85029950759     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.14240     Document Type: Article
Times cited : (16)

References (84)
  • 1
    • 84907379419 scopus 로고    scopus 로고
    • Human influence on the dispersal and genetic structure of French Globodera tabacum populations
    • Alenda, C., Montarry, J., & Grenier, E. (2014). Human influence on the dispersal and genetic structure of French Globodera tabacum populations. Infection, Genetics and Evolution, 27, 309–317.
    • (2014) Infection, Genetics and Evolution , vol.27 , pp. 309-317
    • Alenda, C.1    Montarry, J.2    Grenier, E.3
  • 3
    • 84945489501 scopus 로고    scopus 로고
    • Host genetic resistance to root-knot nematodes, Meloidogyne spp., in Solanaceae: From genes to the field
    • Barbary, A., Djian-Caporalino, C., Palloix, A., & Castagnone-Sereno, P. (2015). Host genetic resistance to root-knot nematodes, Meloidogyne spp., in Solanaceae: From genes to the field. Pest Management Science, 71, 1591–1598.
    • (2015) Pest Management Science , vol.71 , pp. 1591-1598
    • Barbary, A.1    Djian-Caporalino, C.2    Palloix, A.3    Castagnone-Sereno, P.4
  • 4
    • 84957591890 scopus 로고    scopus 로고
    • A SNARE-like protein and biotin are implicated in soybean cyst nematode virulence
    • Bekal, S., Domier, L. L., Gonfa, B., Lakhssassi, N., Meksem, K., & Lambert, K. N. (2015). A SNARE-like protein and biotin are implicated in soybean cyst nematode virulence. PLoS One, 10, e0145601.
    • (2015) PLoS One , vol.10
    • Bekal, S.1    Domier, L.L.2    Gonfa, B.3    Lakhssassi, N.4    Meksem, K.5    Lambert, K.N.6
  • 8
    • 0036273866 scopus 로고    scopus 로고
    • Genetic variability of nematodes: A threat to the durability of plant resistance genes?
    • Castagnone-Sereno, P. (2002). Genetic variability of nematodes: A threat to the durability of plant resistance genes? Euphytica, 124, 193–199.
    • (2002) Euphytica , vol.124 , pp. 193-199
    • Castagnone-Sereno, P.1
  • 9
    • 84892721539 scopus 로고    scopus 로고
    • Private selective sweeps identified from next-generation pool-sequencing reveal convergent pathways under selection in two inbred Schistosoma mansoni strains
    • Clément, J. A., Toulza, E., Gautier, M., Parrinello, H., Roquis, D., Boissier, J., … Grunau, C. (2013). Private selective sweeps identified from next-generation pool-sequencing reveal convergent pathways under selection in two inbred Schistosoma mansoni strains. PLoS Neglected Tropical Diseases, 7, e2591.
    • (2013) PLoS Neglected Tropical Diseases , vol.7
    • Clément, J.A.1    Toulza, E.2    Gautier, M.3    Parrinello, H.4    Roquis, D.5    Boissier, J.6    Grunau, C.7
  • 10
    • 77956491134 scopus 로고    scopus 로고
    • Using environmental correlations to identify loci underlying local adaptation
    • Coop, G., Witonsky, D., Rienzo, A., & Pritchard, J. K. (2010). Using environmental correlations to identify loci underlying local adaptation. Genetics, 185, 1411–1423.
    • (2010) Genetics , vol.185 , pp. 1411-1423
    • Coop, G.1    Witonsky, D.2    Rienzo, A.3    Pritchard, J.K.4
  • 11
    • 84897947420 scopus 로고    scopus 로고
    • The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode
    • Cotton, J. A., Lilley, C. J., Jones, L. M., Kikuchi, T., Reid, A. J., Thorpe, P., … Urwin, P. E. (2014). The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology, 15, R43.
    • (2014) Genome Biology , vol.15 , pp. R43
    • Cotton, J.A.1    Lilley, C.J.2    Jones, L.M.3    Kikuchi, T.4    Reid, A.J.5    Thorpe, P.6    Urwin, P.E.7
  • 14
    • 2442492016 scopus 로고    scopus 로고
    • Molecular characterization of a Melon necrotic spot virus strain that overcomes the resistance in melon and nonhost plants
    • Díaz, J. A., Nieto, C., Moriones, E., Truniger, V., & Aranda, M. A. (2004). Molecular characterization of a Melon necrotic spot virus strain that overcomes the resistance in melon and nonhost plants. Molecular Plant-Microbe Interactions, 17, 668–675.
    • (2004) Molecular Plant-Microbe Interactions , vol.17 , pp. 668-675
    • Díaz, J.A.1    Nieto, C.2    Moriones, E.3    Truniger, V.4    Aranda, M.A.5
  • 15
    • 84992520911 scopus 로고    scopus 로고
    • SPRYSEC effectors: A versatile protein-binding platform to disrupt plant innate immunity
    • Diaz-Granados, A., Petrescu, A. J., Goverse, A., & Smant, G. (2016). SPRYSEC effectors: A versatile protein-binding platform to disrupt plant innate immunity. Frontiers in Plant Science, 7, 1575.
    • (2016) Frontiers in Plant Science , vol.7 , pp. 1575
    • Diaz-Granados, A.1    Petrescu, A.J.2    Goverse, A.3    Smant, G.4
  • 16
    • 84897688788 scopus 로고    scopus 로고
    • Pyramiding, alternating or mixing: Comparative performances of deployment strategies of nematode resistance genes to promote plant resistance efficiency and durability
    • Djian-Caporalino, C., Palloix, A., Fazari, A., Marteu, N., Barbary, A., Abad, P., … Taussig, C. (2014). Pyramiding, alternating or mixing: Comparative performances of deployment strategies of nematode resistance genes to promote plant resistance efficiency and durability. BMC Plant Biology, 14, 53.
    • (2014) BMC Plant Biology , vol.14 , pp. 53
    • Djian-Caporalino, C.1    Palloix, A.2    Fazari, A.3    Marteu, N.4    Barbary, A.5    Abad, P.6    Taussig, C.7
  • 17
    • 0000389325 scopus 로고
    • Ultrastructure of esophageal gland secretory granules in juveniles of Heterodera glycines
    • Endo, B. Y. (1987). Ultrastructure of esophageal gland secretory granules in juveniles of Heterodera glycines. Journal of Nematology, 19, 469–483.
    • (1987) Journal of Nematology , vol.19 , pp. 469-483
    • Endo, B.Y.1
  • 18
    • 85006778839 scopus 로고    scopus 로고
    • Experimentally evolved populations of the potato cyst nematode Globodera pallida allow the targeting of genomic footprints of selection due to host adaptation
    • Eoche-Bosy, D., Gauthier, J., Juhel, A. S., Esquibet, M., Fournet, S., Grenier, E., & Montarry, J. (2017). Experimentally evolved populations of the potato cyst nematode Globodera pallida allow the targeting of genomic footprints of selection due to host adaptation. Plant Pathology, 66, 1022–1030.
    • (2017) Plant Pathology , vol.66 , pp. 1022-1030
    • Eoche-Bosy, D.1    Gauthier, J.2    Juhel, A.S.3    Esquibet, M.4    Fournet, S.5    Grenier, E.6    Montarry, J.7
  • 19
    • 84994430065 scopus 로고    scopus 로고
    • Opening the effector protein toolbox for plant-parasitic cyst-nematode interactions
    • Eves-van den Akker, S., & Birch, P. R. (2016). Opening the effector protein toolbox for plant-parasitic cyst-nematode interactions. Molecular Plant, 9, 1451–1453.
    • (2016) Molecular Plant , vol.9 , pp. 1451-1453
    • Eves-van den Akker, S.1    Birch, P.R.2
  • 20
    • 84973520328 scopus 로고    scopus 로고
    • The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence
    • Eves-van den Akker, S., Laetsch, D. R., Thorpe, P., Lilley, C. J., Danchin, E. G., Da Rocha, M., … Grenier, E. (2016). The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. Genome Biology, 17, 124.
    • (2016) Genome Biology , vol.17 , pp. 124
    • Eves-van den Akker, S.1    Laetsch, D.R.2    Thorpe, P.3    Lilley, C.J.4    Danchin, E.G.5    Da Rocha, M.6    Grenier, E.7
  • 22
    • 84887321898 scopus 로고    scopus 로고
    • Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps
    • Fischer, M. C., Rellstab, C., Tedder, A., Zoller, S., Gugerli, F., Shimizu, K. K., … Widmer, A. (2013). Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps. Molecular Ecology, 22, 5594–5607.
    • (2013) Molecular Ecology , vol.22 , pp. 5594-5607
    • Fischer, M.C.1    Rellstab, C.2    Tedder, A.3    Zoller, S.4    Gugerli, F.5    Shimizu, K.K.6    Widmer, A.7
  • 23
    • 84908578254 scopus 로고    scopus 로고
    • A metric for covariance matrices
    • #x0026;, In, E. W. Grafarend, F. W. Krumm, #x0026;, V. S. Schwarze, (Eds.),, Berlin/Heidelberg, Germany, Springer-Verlag
    • Förstner, W., & Moonen, B. (2003). A metric for covariance matrices. In E. W. Grafarend, F. W. Krumm, & V. S. Schwarze (Eds.), Geodesy-the challenge of the 3rd millennium (pp. 299–309). Berlin/Heidelberg, Germany: Springer-Verlag.
    • (2003) Geodesy-the challenge of the 3rd millennium , pp. 299-309
    • Förstner, W.1    Moonen, B.2
  • 24
    • 84960890726 scopus 로고    scopus 로고
    • Adaptation to resistant hosts increases fitness on susceptible hosts in the plant parasitic nematode Globodera pallida
    • Fournet, S., Eoche-Bosy, D., Renault, L., Hamelin, F. M., & Montarry, J. (2016). Adaptation to resistant hosts increases fitness on susceptible hosts in the plant parasitic nematode Globodera pallida. Ecology and Evolution, 6, 2559–2568.
    • (2016) Ecology and Evolution , vol.6 , pp. 2559-2568
    • Fournet, S.1    Eoche-Bosy, D.2    Renault, L.3    Hamelin, F.M.4    Montarry, J.5
  • 25
    • 84872145937 scopus 로고    scopus 로고
    • Selection of nematodes by resistant plants has implications for local adaptation and cross-virulence
    • Fournet, S., Kerlan, M. C., Renault, L., Dantec, J. P., Rouaux, C., & Montarry, J. (2013). Selection of nematodes by resistant plants has implications for local adaptation and cross-virulence. Plant Pathology, 62, 184–193.
    • (2013) Plant Pathology , vol.62 , pp. 184-193
    • Fournet, S.1    Kerlan, M.C.2    Renault, L.3    Dantec, J.P.4    Rouaux, C.5    Montarry, J.6
  • 26
    • 78751665708 scopus 로고    scopus 로고
    • The next generation of molecular markers from massively parallel sequencing of pooled DNA samples
    • Futschik, A., & Schlötterer, C. (2010). The next generation of molecular markers from massively parallel sequencing of pooled DNA samples. Genetics, 186, 207–218.
    • (2010) Genetics , vol.186 , pp. 207-218
    • Futschik, A.1    Schlötterer, C.2
  • 29
    • 84957542370 scopus 로고    scopus 로고
    • Genome-wide scan for adaptive differentiation and association analysis with population-specific covariables
    • Gautier, M. (2015). Genome-wide scan for adaptive differentiation and association analysis with population-specific covariables. Genetics, 201, 1555–1579.
    • (2015) Genetics , vol.201 , pp. 1555-1579
    • Gautier, M.1
  • 30
    • 84880173092 scopus 로고    scopus 로고
    • Estimation of population allele frequencies from next-generation sequencing data: Pool-versus individual-based genotyping
    • Gautier, M., Foucaud, J., Gharbi, K., Cézard, T., Galan, M., Loiseau, A., … Estoup, A. (2013). Estimation of population allele frequencies from next-generation sequencing data: Pool-versus individual-based genotyping. Molecular Ecology, 22, 3766–3779.
    • (2013) Molecular Ecology , vol.22 , pp. 3766-3779
    • Gautier, M.1    Foucaud, J.2    Gharbi, K.3    Cézard, T.4    Galan, M.5    Loiseau, A.6    Estoup, A.7
  • 31
    • 1642559479 scopus 로고
    • The influence of multiple mating on the reproduction and genetics of Heterodera rostochiensis and H. schachtii
    • Green, C. D., Greet, D. N., & Jones, F. G. W. (1970). The influence of multiple mating on the reproduction and genetics of Heterodera rostochiensis and H. schachtii. Nematologica, 16, 309–326.
    • (1970) Nematologica , vol.16 , pp. 309-326
    • Green, C.D.1    Greet, D.N.2    Jones, F.G.W.3
  • 32
    • 84883774412 scopus 로고    scopus 로고
    • Robust identification of local adaptation from allele frequencies
    • Günther, T., & Coop, G. (2013). Robust identification of local adaptation from allele frequencies. Genetics, 195, 205–220.
    • (2013) Genetics , vol.195 , pp. 205-220
    • Günther, T.1    Coop, G.2
  • 33
    • 84155195072 scopus 로고    scopus 로고
    • Functional roles of effectors of plant-parasitic nematodes
    • Haegeman, A., Mantelin, S., Jones, J. T., & Gheysen, G. (2012). Functional roles of effectors of plant-parasitic nematodes. Gene, 492, 19–31.
    • (2012) Gene , vol.492 , pp. 19-31
    • Haegeman, A.1    Mantelin, S.2    Jones, J.T.3    Gheysen, G.4
  • 34
    • 84871023858 scopus 로고    scopus 로고
    • Manipulation of plant cells by cyst and root-knot nematode effectors
    • Hewezi, T., & Baum, T. J. (2012). Manipulation of plant cells by cyst and root-knot nematode effectors. Molecular Plant-Microbe Interactions, 26, 9–16.
    • (2012) Molecular Plant-Microbe Interactions , vol.26 , pp. 9-16
    • Hewezi, T.1    Baum, T.J.2
  • 35
    • 68449104864 scopus 로고    scopus 로고
    • Constraints on evolution of virus avirulence factors predict the durability of corresponding plant resistances
    • Janzac, B., Fabre, F., Palloix, A., & Moury, B. (2009). Constraints on evolution of virus avirulence factors predict the durability of corresponding plant resistances. Molecular Plant Pathology, 10, 599–610.
    • (2009) Molecular Plant Pathology , vol.10 , pp. 599-610
    • Janzac, B.1    Fabre, F.2    Palloix, A.3    Moury, B.4
  • 36
    • 77952682437 scopus 로고    scopus 로고
    • A point mutation in the polymeras Potato Virus Y confers virulence toward the Pvr4 resistance of pepper and a high competitiveness cost in susceptible cultivar
    • Janzac, B., Montarry, J., Palloix, A., Navaud, O., & Moury, B. (2010). A point mutation in the polymeras Potato Virus Y confers virulence toward the Pvr4 resistance of pepper and a high competitiveness cost in susceptible cultivar. Molecular Plant-Microbe Interactions, 23, 823–830.
    • (2010) Molecular Plant-Microbe Interactions , vol.23 , pp. 823-830
    • Janzac, B.1    Montarry, J.2    Palloix, A.3    Navaud, O.4    Moury, B.5
  • 37
    • 0003414592 scopus 로고
    • 3rd ed., Oxford, UK, Oxford University Press
    • Jeffreys, H. (1961). Theory of probability (3rd ed.). Oxford, UK: Oxford University Press.
    • (1961) Theory of probability
    • Jeffreys, H.1
  • 38
    • 0008985659 scopus 로고
    • Observations on the beet eelworm and other cyst-forming species of Heterodera
    • Jones, F. G. W. (1950). Observations on the beet eelworm and other cyst-forming species of Heterodera. Annals of Applied Biology, 37, 407–440.
    • (1950) Annals of Applied Biology , vol.37 , pp. 407-440
    • Jones, F.G.W.1
  • 39
    • 0015344801 scopus 로고
    • Nematode-induced syncytium – a multinucleate transfer cell
    • Jones, M. G. K., & Northcote, D. H. (1972). Nematode-induced syncytium – a multinucleate transfer cell. Journal of Cell Science, 10, 789–809.
    • (1972) Journal of Cell Science , vol.10 , pp. 789-809
    • Jones, M.G.K.1    Northcote, D.H.2
  • 40
    • 34547584314 scopus 로고    scopus 로고
    • Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server
    • Käll, L., Krogh, A., & Sonnhammer, E. L. (2007). Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Research, 35, W429–W432.
    • (2007) Nucleic Acids Research , vol.35 , pp. W429-W432
    • Käll, L.1    Krogh, A.2    Sonnhammer, E.L.3
  • 41
    • 0346991744 scopus 로고    scopus 로고
    • A microsatellite variability screen for positive selection associated with the “Out of Africa” habitat expansion of Drosophila melanogaster
    • Kauer, M. O., Dieringer, D., & Schlötterer, C. (2003). A microsatellite variability screen for positive selection associated with the “Out of Africa” habitat expansion of Drosophila melanogaster. Genetics, 165, 1137–1148.
    • (2003) Genetics , vol.165 , pp. 1137-1148
    • Kauer, M.O.1    Dieringer, D.2    Schlötterer, C.3
  • 42
    • 84955185515 scopus 로고    scopus 로고
    • The impact of library preparation protocols on the consistency of allele frequency estimates in Pool-Seq data
    • Kofler, R., Nolte, V., & Schlötterer, C. (2016). The impact of library preparation protocols on the consistency of allele frequency estimates in Pool-Seq data. Molecular Ecology Resources, 16, 118–122.
    • (2016) Molecular Ecology Resources , vol.16 , pp. 118-122
    • Kofler, R.1    Nolte, V.2    Schlötterer, C.3
  • 43
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Cole, T., Pop, M., & Salzberg, S. L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology, 10, R25.
    • (2009) Genome Biology , vol.10 , pp. R25
    • Langmead, B.1    Cole, T.2    Pop, M.3    Salzberg, S.L.4
  • 44
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature Methods, 9, 357–359.
    • (2012) Nature Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 47
  • 48
  • 49
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis, E. R. (2008). The impact of next-generation sequencing technology on genetics. Trends in Genetics, 24, 133–141.
    • (2008) Trends in Genetics , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 50
    • 0036028757 scopus 로고    scopus 로고
    • Pathogen population genetics, evolutionary potential, and durable resistance
    • McDonald, B. A., & Linde, C. (2002). Pathogen population genetics, evolutionary potential, and durable resistance. Annual Review of Phytopathology, 40, 349–379.
    • (2002) Annual Review of Phytopathology , vol.40 , pp. 349-379
    • McDonald, B.A.1    Linde, C.2
  • 51
    • 33749033325 scopus 로고    scopus 로고
    • The genetic architecture of normal variation in human pigmentation: An evolutionary perspective and model
    • McEvoy, B., Beleza, S., & Shriver, M. D. (2006). The genetic architecture of normal variation in human pigmentation: An evolutionary perspective and model. Human Molecular Genetics, 15, R176–R181.
    • (2006) Human Molecular Genetics , vol.15 , pp. R176-R181
    • McEvoy, B.1    Beleza, S.2    Shriver, M.D.3
  • 52
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., … DePristo, M. A. (2010). The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research, 20, 1297–1303.
    • (2010) Genome Research , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5    Kernytsky, A.6    DePristo, M.A.7
  • 53
    • 84930904295 scopus 로고    scopus 로고
    • Only a small subset of the SPRY domain gene family in Globodera pallida is likely to encode effectors, two of which suppress host defences induced by the potato resistance gene Gpa2
    • Mei, Y., Thorpe, P., Guzha, A., Haegeman, A., Blok, V. C., MacKenzie, K., … Mantelin, S. (2015). Only a small subset of the SPRY domain gene family in Globodera pallida is likely to encode effectors, two of which suppress host defences induced by the potato resistance gene Gpa2. Nematology, 17, 409–424.
    • (2015) Nematology , vol.17 , pp. 409-424
    • Mei, Y.1    Thorpe, P.2    Guzha, A.3    Haegeman, A.4    Blok, V.C.5    MacKenzie, K.6    Mantelin, S.7
  • 54
    • 0000021646 scopus 로고
    • Two concomitant base substitutions in the putative replicase genes of tobacco mosaic virus confer the ability to overcome the effects of a tomato resistance gene, Tm-1
    • Meshi, T., Motoyoshi, F., Adachi, A., Watanabe, Y., Takamatsu, N., & Okada, Y. (1988). Two concomitant base substitutions in the putative replicase genes of tobacco mosaic virus confer the ability to overcome the effects of a tomato resistance gene, Tm-1. EMBO Journal, 7, 1575–1581.
    • (1988) EMBO Journal , vol.7 , pp. 1575-1581
    • Meshi, T.1    Motoyoshi, F.2    Adachi, A.3    Watanabe, Y.4    Takamatsu, N.5    Okada, Y.6
  • 59
    • 34249848751 scopus 로고    scopus 로고
    • CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes
    • Parra, G., Bradnam, K., & Korf, I. (2007). CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics, 23, 1061–1067.
    • (2007) Bioinformatics , vol.23 , pp. 1061-1067
    • Parra, G.1    Bradnam, K.2    Korf, I.3
  • 60
    • 84866933213 scopus 로고    scopus 로고
    • A critical assessment of storytelling: Gene ontology categories and the importance of validating genomic scans
    • Pavlidis, P., Jensen, J. D., Stephan, W., & Stamatakis, A. (2012). A critical assessment of storytelling: Gene ontology categories and the importance of validating genomic scans. Molecular Biology and Evolution, 29, 3237–3248.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 3237-3248
    • Pavlidis, P.1    Jensen, J.D.2    Stephan, W.3    Stamatakis, A.4
  • 61
    • 80053345905 scopus 로고    scopus 로고
    • signalp 4.0: Discriminating signal peptides from transmembrane regions
    • Petersen, T. N., Brunak, S., von Heijne, G., & Nielsen, H. (2011). signalp 4.0: Discriminating signal peptides from transmembrane regions. Nature Methods, 8, 785–786.
    • (2011) Nature Methods , vol.8 , pp. 785-786
    • Petersen, T.N.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 62
    • 4644247203 scopus 로고    scopus 로고
    • Inbreeding and population structure of the potato cyst nematode (Globodera pallida) in its native area (Peru)
    • Picard, D., Plantard, O., Scurrah, M., & Mugniéry, D. (2004). Inbreeding and population structure of the potato cyst nematode (Globodera pallida) in its native area (Peru). Molecular Ecology, 13, 2899–2908.
    • (2004) Molecular Ecology , vol.13 , pp. 2899-2908
    • Picard, D.1    Plantard, O.2    Scurrah, M.3    Mugniéry, D.4
  • 63
    • 1642565397 scopus 로고    scopus 로고
    • Population genetic structure of the sugar beet cyst nematode Heterodera schachtii: A gonochoristic and amphimictic species with highly inbred but weakly differentiated populations
    • Plantard, O., & Porte, C. (2004). Population genetic structure of the sugar beet cyst nematode Heterodera schachtii: A gonochoristic and amphimictic species with highly inbred but weakly differentiated populations. Molecular Ecology, 13, 33–41.
    • (2004) Molecular Ecology , vol.13 , pp. 33-41
    • Plantard, O.1    Porte, C.2
  • 64
    • 61349201468 scopus 로고    scopus 로고
    • A secreted SPRY domain-containing protein (SPRYSEC) from the plant-parasitic nematode Globodera rostochiensis interacts with a CC-NB-LRR protein from a susceptible tomato
    • Rehman, S., Postma, W., Tytgat, T., Prins, P., Qin, L., Overmars, H., … Bakker, J. (2009). A secreted SPRY domain-containing protein (SPRYSEC) from the plant-parasitic nematode Globodera rostochiensis interacts with a CC-NB-LRR protein from a susceptible tomato. Molecular Plant-Microbe Interactions, 22, 330–340.
    • (2009) Molecular Plant-Microbe Interactions , vol.22 , pp. 330-340
    • Rehman, S.1    Postma, W.2    Tytgat, T.3    Prins, P.4    Qin, L.5    Overmars, H.6    Bakker, J.7
  • 65
    • 84892414734 scopus 로고    scopus 로고
    • Validation of SNP allele frequencies determined by pooled next-generation sequencing in natural populations of a non-model plant species
    • Rellstab, C., Zoller, S., Tedder, A., Gugerli, F., & Fischer, M. C. (2013). Validation of SNP allele frequencies determined by pooled next-generation sequencing in natural populations of a non-model plant species. PLoS One, 8, e80422.
    • (2013) PLoS One , vol.8
    • Rellstab, C.1    Zoller, S.2    Tedder, A.3    Gugerli, F.4    Fischer, M.C.5
  • 66
    • 84914703694 scopus 로고    scopus 로고
    • Illuminating choices for library prep: A comparison of library preparation methods for whole genome sequencing of Cryptococcus neoformans using Illumina HiSeq
    • Rhodes, J., Beale, M. A., & Fisher, M. C. (2014). Illuminating choices for library prep: A comparison of library preparation methods for whole genome sequencing of Cryptococcus neoformans using Illumina HiSeq. PLoS One, 9, e113501.
    • (2014) PLoS One , vol.9
    • Rhodes, J.1    Beale, M.A.2    Fisher, M.C.3
  • 68
    • 0032789642 scopus 로고    scopus 로고
    • Linkage analysis by genotyping of sibling populations: A genetic map for the potato cyst nematode constructed using a ‘pseudo-F2’ mapping strategy
    • Rouppe van der Voort, J. N. A. M., van Eck, H. J., van Zandvoort, P. M., Overmars, H., Helder, J., & Bakker, J. (1999). Linkage analysis by genotyping of sibling populations: A genetic map for the potato cyst nematode constructed using a ‘pseudo-F2’ mapping strategy. Molecular and General Genetics, 261, 1021–1031.
    • (1999) Molecular and General Genetics , vol.261 , pp. 1021-1031
    • Rouppe van der Voort, J.N.A.M.1    van Eck, H.J.2    van Zandvoort, P.M.3    Overmars, H.4    Helder, J.5    Bakker, J.6
  • 72
    • 13444314036 scopus 로고    scopus 로고
    • A novel test statistic for the identification of local selective sweeps based on microsatellite gene diversity
    • #x0026;, In, D. Nurminsky, (Ed.),, Georgetown, TX, Landes Bioscience
    • Schlötterer, C., & Dieringer, D. (2005). A novel test statistic for the identification of local selective sweeps based on microsatellite gene diversity. In D. Nurminsky (Ed.), Selective sweep (pp. 55–64). Georgetown, TX: Landes Bioscience.
    • (2005) Selective sweep , pp. 55-64
    • Schlötterer, C.1    Dieringer, D.2
  • 73
    • 84908150953 scopus 로고    scopus 로고
    • Sequencing pools of individuals – mining genome-wide polymorphism data without big funding
    • Schlötterer, C., Tobler, R., Kofler, R., & Nolte, V. (2014). Sequencing pools of individuals – mining genome-wide polymorphism data without big funding. Nature Review Genetics, 15, 749–763.
    • (2014) Nature Review Genetics , vol.15 , pp. 749-763
    • Schlötterer, C.1    Tobler, R.2    Kofler, R.3    Nolte, V.4
  • 74
    • 84865541916 scopus 로고    scopus 로고
    • Cyst nematodes and syncytia
    • #x0026;, In, J. T. Jones, G. Gheysen, #x0026;, C. Fenoil, (Eds.),, Dordrecht, The Netherlands, Springer
    • Sobczak, M., & Golinowski, W. (2011). Cyst nematodes and syncytia. In J. T. Jones, G. Gheysen, & C. Fenoil (Eds.), Genomics and molecular genetics of plant-nematode interactions (pp. 61–82). Dordrecht, The Netherlands: Springer.
    • (2011) Genomics and molecular genetics of plant-nematode interactions , pp. 61-82
    • Sobczak, M.1    Golinowski, W.2
  • 75
    • 14844313712 scopus 로고    scopus 로고
    • Using genome scans of DNA polymorphism to infer adaptive population divergence
    • Storz, J. F. (2005). Using genome scans of DNA polymorphism to infer adaptive population divergence. Molecular Ecology, 14, 671–688.
    • (2005) Molecular Ecology , vol.14 , pp. 671-688
    • Storz, J.F.1
  • 76
    • 33646693855 scopus 로고    scopus 로고
    • A highthroughput method for quantifying alleles and haplotypes of the malaria vaccine candidate Plasmodium falciparum merozoite surface protein-I 19 kDa
    • Takala, S. L., Smith, D. L., Stine, O. C., Coulibaly, D., Thera, M. A., Doumbo, O. K., & Plowe, C. V. (2006). A highthroughput method for quantifying alleles and haplotypes of the malaria vaccine candidate Plasmodium falciparum merozoite surface protein-I 19 kDa. Malaria Journal, 5, 31.
    • (2006) Malaria Journal , vol.5 , pp. 31
    • Takala, S.L.1    Smith, D.L.2    Stine, O.C.3    Coulibaly, D.4    Thera, M.A.5    Doumbo, O.K.6    Plowe, C.V.7
  • 77
    • 1642559482 scopus 로고
    • Demonstration of multiple mating in Heterodera glycines with biochemical markers
    • Triantaphyllou, A. C., & Esbenshade, P. R. (1990). Demonstration of multiple mating in Heterodera glycines with biochemical markers. Journal of Nematology, 22, 452–456.
    • (1990) Journal of Nematology , vol.22 , pp. 452-456
    • Triantaphyllou, A.C.1    Esbenshade, P.R.2
  • 79
    • 84867731673 scopus 로고    scopus 로고
    • Estimating frequencies of virulent isolates in field populations of a plant pathogenic fungus, Leptosphaeria maculans, using high-throughput pyrosequencing
    • Van de Wouw, A. P., & Howlett, B. J. (2012). Estimating frequencies of virulent isolates in field populations of a plant pathogenic fungus, Leptosphaeria maculans, using high-throughput pyrosequencing. Journal of Applied Microbiology, 113, 1145–1153.
    • (2012) Journal of Applied Microbiology , vol.113 , pp. 1145-1153
    • Van de Wouw, A.P.1    Howlett, B.J.2
  • 81
    • 4944250792 scopus 로고    scopus 로고
    • Potato cyst nematodes (Globodera species) in western Europe
    • #x0026;, In, R. J. Marks, #x0026;, B. B. Brodie, (Eds.),, Wallingford, UK, CAB International
    • van Riel, H. R., & Mulder, A. (1998). Potato cyst nematodes (Globodera species) in western Europe. In R. J. Marks, & B. B. Brodie (Eds.), Potato cyst nematodes: Biology, distribution and control (pp. 271–298). Wallingford, UK: CAB International.
    • (1998) Potato cyst nematodes: Biology, distribution and control , pp. 271-298
    • van Riel, H.R.1    Mulder, A.2
  • 83
    • 0002697983 scopus 로고    scopus 로고
    • Invasion and migration behaviour of sedentary nematodes
    • In, C. Fenoll, F. M. W. Grundler, #x0026;, S. A. Ohl, (Eds.),, Dordrecht, The Netherlands, Kluwer Academic Publishers
    • von Mende, N. (1997). Invasion and migration behaviour of sedentary nematodes. In C. Fenoll, F. M. W. Grundler, & S. A. Ohl (Eds.), Cellular and molecular aspects of plant-nematodes interactions (pp. 51–64). Dordrecht, The Netherlands: Kluwer Academic Publishers.
    • (1997) Cellular and molecular aspects of plant-nematodes interactions , pp. 51-64
    • von Mende, N.1
  • 84
    • 84864832228 scopus 로고    scopus 로고
    • Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster
    • Zhu, Y., Bergland, A. O., González, J., & Petrov, D. A. (2012). Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster. PLoS One, 7, e41901.
    • (2012) PLoS One , vol.7
    • Zhu, Y.1    Bergland, A.O.2    González, J.3    Petrov, D.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.