메뉴 건너뛰기




Volumn 8, Issue , 2017, Pages

Investigations on factors influencing HPO-based semantic similarity calculation

Author keywords

Biological ontology; Human phenotype ontology; Semantic similarity

Indexed keywords

ALGORITHM; BIOLOGICAL ONTOLOGY; BIOLOGY; HUMAN; MOLECULAR GENETICS; PHENOTYPE; PROCEDURES; SEMANTICS;

EID: 85029761726     PISSN: None     EISSN: 20411480     Source Type: Journal    
DOI: 10.1186/s13326-017-0144-y     Document Type: Article
Times cited : (3)

References (36)
  • 3
    • 84924666082 scopus 로고    scopus 로고
    • Study TDDD: Large-scale discovery of novel genetic causes of developmental disorders
    • Study TDDD: Large-scale discovery of novel genetic causes of developmental disorders. Nature. 2015; 519(7542):223-8.
    • (2015) Nature , vol.519 , Issue.7542 , pp. 223-228
  • 6
    • 77953888015 scopus 로고    scopus 로고
    • Prioritization of disease micrornas through a human phenome-micrornaome network
    • Jiang Q, Hao Y, Wang G, Juan L, Zhang T, Teng M, Liu Y, Wang Y. Prioritization of disease micrornas through a human phenome-micrornaome network. BMC Syst Biol. 2010; 4 Suppl 1(Suppl 1):1-9.
    • (2010) BMC Syst Biol , vol.4 , pp. 1-9
    • Jiang, Q.1    Hao, Y.2    Wang, G.3    Juan, L.4    Zhang, T.5    Teng, M.6    Liu, Y.7    Wang, Y.8
  • 7
    • 84954358609 scopus 로고    scopus 로고
    • The human phenotype ontology: a tool for annotating and analyzing human hereditary disease
    • Robinson PN, Köhler S, Bauer S, Seelow D, Horn D, Mundlos S. The human phenotype ontology: a tool for annotating and analyzing human hereditary disease. Am J Hum Genet. 2008; 83(5):610-5.
    • (2008) Am J Hum Genet , vol.83 , Issue.5 , pp. 610-615
    • Robinson, P.N.1    Köhler, S.2    Bauer, S.3    Seelow, D.4    Horn, D.5    Mundlos, S.6
  • 11
    • 84979523479 scopus 로고    scopus 로고
    • DisSim: an online system for exploring significant similar diseases and exhibiting potential therapeutic drugs[J]
    • Cheng L, Jiang Y, Wang Z, Shi H, Sun J, Yang H, Zhang S, Hu Y, Zhou M. DisSim: an online system for exploring significant similar diseases and exhibiting potential therapeutic drugs[J]. Sci Rep. 2016; 6:30024.
    • (2016) Sci Rep. , vol.6 , pp. 30024
    • Cheng, L.1    Jiang, Y.2    Wang, Z.3    Shi, H.4    Sun, J.5    Yang, H.6    Zhang, S.7    Hu, Y.8    Zhou, M.9
  • 13
    • 84985916601 scopus 로고    scopus 로고
    • Annotating the Function of the Human Genome with Gene Ontology and Disease Ontology:[J]
    • Hu Y, Zhou W, Ren J, Dong L, Wang Y, Jin S, Cheng L. Annotating the Function of the Human Genome with Gene Ontology and Disease Ontology:[J]. BioMed Res Int. 2016; 2016:4130861.
    • (2016) BioMed Res Int. , vol.2016 , pp. 4130861
    • Hu, Y.1    Zhou, W.2    Ren, J.3    Dong, L.4    Wang, Y.5    Jin, S.6    Cheng, L.7
  • 16
    • 84966570660 scopus 로고    scopus 로고
    • Extending gene ontology with gene association networks
    • Peng J, Wang T, Wang J, Wang Y, Chen J. Extending gene ontology with gene association networks. Bioinformatics. 2016; 32(8):1185-94.
    • (2016) Bioinformatics , vol.32 , Issue.8 , pp. 1185-1194
    • Peng, J.1    Wang, T.2    Wang, J.3    Wang, Y.4    Chen, J.5
  • 17
    • 84903289028 scopus 로고    scopus 로고
    • Semfunsim: a new method for measuring disease similarity by integrating semantic and gene functional association
    • Cheng L, Li J, Ju P, Peng J, Wang Y. Semfunsim: a new method for measuring disease similarity by integrating semantic and gene functional association. PloS one. 2014; 9(6):99415.
    • (2014) PloS one , vol.9 , Issue.6 , pp. 99415
    • Cheng, L.1    Li, J.2    Ju, P.3    Peng, J.4    Wang, Y.5
  • 18
    • 84984700595 scopus 로고    scopus 로고
    • InteGO2: a web tool for measuring and visualizing gene semantic similarities using Gene Ontology[J]
    • Peng J, Li H, Liu Y, Juan L, Jiang Q, Wang Y, Jin C. InteGO2: a web tool for measuring and visualizing gene semantic similarities using Gene Ontology[J]. BMC Genomics. 2016; 17(5):530.
    • (2016) BMC Genomics , vol.17 , Issue.5 , pp. 530
    • Peng, J.1    Li, H.2    Liu, Y.3    Juan, L.4    Jiang, Q.5    Wang, Y.6    Jin, C.7
  • 23
    • 84922593366 scopus 로고    scopus 로고
    • Hposim: an r package for phenotypic similarity measure and enrichment analysis based on the human phenotype ontology
    • Deng Y, Gao L, Wang B, Guo X. Hposim: an r package for phenotypic similarity measure and enrichment analysis based on the human phenotype ontology. PloS one. 2015; 10(2):0115692.
    • (2015) PloS one , vol.10 , Issue.2 , pp. 115692
    • Deng, Y.1    Gao, L.2    Wang, B.3    Guo, X.4
  • 26
    • 85029765485 scopus 로고    scopus 로고
    • Oahg: an integrated resource for annotating human genes with multi-level ontologies
    • Liang C, Jie S, Wanying X, Lixiang D, Yang H, Meng Z. Oahg: an integrated resource for annotating human genes with multi-level ontologies. Sci Rep. 2016; 10:34820.
    • (2016) Sci Rep , vol.10 , pp. 34820
    • Liang, C.1    Wanying, X.2    Lixiang, D.3    Yang, H.4    Meng, Z.5
  • 27
    • 84924071510 scopus 로고    scopus 로고
    • Measuring semantic similarities by combining gene ontology annotations and gene co-function networks
    • Peng J, Uygun S, Kim T, Wang Y, Rhee SY, Chen J. Measuring semantic similarities by combining gene ontology annotations and gene co-function networks. BMC Bioinforma. 2015; 16(1):1.
    • (2015) BMC Bioinforma , vol.16 , Issue.1 , pp. 1
    • Peng, J.1    Uygun, S.2    Kim, T.3    Wang, Y.4    Rhee, S.Y.5    Chen, J.6
  • 28
    • 84878328074 scopus 로고    scopus 로고
    • Measuring gene functional similarity based on group-wise comparison of GO terms[J]
    • Teng Z, Guo M, Liu X, Dai Q, Wang C, Xuan P. Measuring gene functional similarity based on group-wise comparison of GO terms[J]. Bioinformatics. 2013; 29(11):1424-32.
    • (2013) Bioinformatics , vol.29 , Issue.11 , pp. 1424-1432
    • Teng, Z.1    Guo, M.2    Liu, X.3    Dai, Q.4    Wang, C.5    Xuan, P.6
  • 29
    • 84961595200 scopus 로고    scopus 로고
    • An integrative approach for measuring semantic similarities using gene ontology
    • Peng J, Li H, Jiang Q, Wang Y, Chen J. An integrative approach for measuring semantic similarities using gene ontology. BMC Sys Biol. 2014; 8(Suppl 5):8.
    • (2014) BMC Sys Biol , vol.8 , pp. 8
    • Peng, J.1    Li, H.2    Jiang, Q.3    Wang, Y.4    Chen, J.5
  • 31
    • 84901254443 scopus 로고    scopus 로고
    • Towards integrative gene functional similarity measurement
    • Peng J, Wang Y, Chen J. Towards integrative gene functional similarity measurement. BMC Bioinforma. 2014; 15(2):1.
    • (2014) BMC Bioinforma , vol.15 , Issue.2 , pp. 1
    • Peng, J.1    Wang, Y.2    Chen, J.3
  • 32
  • 33
    • 84884184167 scopus 로고    scopus 로고
    • Identifying cross-category relations in gene ontology and constructing genome-specific term association networks
    • Peng J, Chen J, Wang Y. Identifying cross-category relations in gene ontology and constructing genome-specific term association networks. BMC Bioinforma. 2013; 14(2):1.
    • (2013) BMC Bioinforma , vol.14 , Issue.2 , pp. 1
    • Peng, J.1    Chen, J.2    Wang, Y.3
  • 34
    • 84874298500 scopus 로고    scopus 로고
    • Assessing identity, redundancy and confounds in gene ontology annotations over time
    • Gillis J, Pavlidis P. Assessing identity, redundancy and confounds in gene ontology annotations over time. Bioinformatics. 2013; 29(4):476-82.
    • (2013) Bioinformatics , vol.29 , Issue.4 , pp. 476-482
    • Gillis, J.1    Pavlidis, P.2
  • 35
    • 84863693531 scopus 로고    scopus 로고
    • Quality of computationally inferred gene ontology annotations
    • Skunca N, Altenhoff A, Dessimoz C. Quality of computationally inferred gene ontology annotations. Plos Comput Biol. 2012; 8(5):1002533-1002533.
    • (2012) Plos Comput Biol , vol.8 , Issue.5 , pp. 1002533-1002533
    • Skunca, N.1    Altenhoff, A.2    Dessimoz, C.3
  • 36
    • 13444266370 scopus 로고    scopus 로고
    • Online mendelian inheritance in man (omim), a knowledgebase of human genes and genetic disorders
    • Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA. Online mendelian inheritance in man (omim), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res. 2005; 33(suppl 1):514-7.
    • (2005) Nucleic Acids Res , vol.33 , pp. 514-517
    • Hamosh, A.1    Scott, A.F.2    Amberger, J.S.3    Bocchini, C.A.4    McKusick, V.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.