메뉴 건너뛰기




Volumn 17, Issue , 2016, Pages

Erratum to: InteGO2: A web tool for measuring and visualizing gene semantic similarities using Gene Ontology. [BMC Genomics. (2016), 17 Suppl 5, (530)]. doi:10.1186/s12864-016-2828-6;InteGO2: A web tool for measuring and visualizing gene semantic similarities using Gene Ontology

Author keywords

Gene Ontology; Semantic similarity; Web tool

Indexed keywords

ARTICLE; CALCULATION; COMPUTER INTERFACE; E-MAIL; GENE ONTOLOGY; INFORMATION PROCESSING; INFORMATION RETRIEVAL; ONLINE SYSTEM; VALIDITY; WEB BROWSER; ALGORITHM; BACTERIAL GENE; BIOLOGY; GENE REGULATORY NETWORK; SOFTWARE;

EID: 84984700595     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-017-3651-4     Document Type: Erratum
Times cited : (29)

References (18)
  • 1
    • 84946735654 scopus 로고    scopus 로고
    • Gene Ontology Consortium: going forward
    • The Gene Ontology Consortium. Gene Ontology Consortium: going forward. Nucleic Acids Res. 2015; 43(D1):D1049-56.
    • (2015) Nucleic Acids Res , vol.43 , Issue.D1 , pp. D1049-D1056
  • 2
    • 84966570660 scopus 로고    scopus 로고
    • Extending gene ontology with gene association networks
    • Peng J, Wang T, Wang J, Wang Y, Chen J. Extending gene ontology with gene association networks. Bioinformatics; 32(8):1185-94.
    • Bioinformatics; , vol.32 , Issue.8 , pp. 1185-1194
    • Peng, J.1    Wang, T.2    Wang, J.3    Wang, Y.4    Chen, J.5
  • 3
    • 84924071510 scopus 로고    scopus 로고
    • Measuring semantic similarities by combining gene ontology annotations and gene co-function networks
    • Peng J, Uygun S, Kim T, Wang Y, Rhee SY, Chen J. Measuring semantic similarities by combining gene ontology annotations and gene co-function networks. BMC Bioinformatics. 2015; 16:1.
    • (2015) BMC Bioinformatics , vol.16 , pp. 1
    • Peng, J.1    Uygun, S.2    Kim, T.3    Wang, Y.4    Rhee, S.Y.5    Chen, J.6
  • 5
    • 84878558653 scopus 로고    scopus 로고
    • Improving the measurement of semantic similarity between gene ontology terms and gene products: Insights from an edge-and ic-based hybrid method
    • Wu X, Pang E, Lin K, Pei Z. Improving the measurement of semantic similarity between gene ontology terms and gene products: Insights from an edge-and ic-based hybrid method. PloS ONE. 2013; 8:e66745.
    • (2013) PloS ONE , vol.8
    • Wu, X.1    Pang, E.2    Lin, K.3    Pei, Z.4
  • 6
    • 33748335463 scopus 로고    scopus 로고
    • A new measure for functional similarity of gene products based on Gene Ontology
    • Schlicker A, Domingues F, Rahnenfhrer J, Lengauer T. A new measure for functional similarity of gene products based on Gene Ontology. BMC bioinformatics. 2006; 7:302.
    • (2006) BMC bioinformatics , vol.7 , pp. 302
    • Schlicker, A.1    Domingues, F.2    Rahnenfhrer, J.3    Lengauer, T.4
  • 7
    • 0002016474 scopus 로고    scopus 로고
    • Semantic similarity in a taxonomy: An information-based measure and its application to problems of ambiguity in natural language
    • Resnik P. Semantic similarity in a taxonomy: An information-based measure and its application to problems of ambiguity in natural language. J Artif Intell Res. 1999; 11:95-130.
    • (1999) J Artif Intell Res , vol.11 , pp. 95-130
    • Resnik, P.1
  • 8
    • 34447294237 scopus 로고    scopus 로고
    • A new method to measure the semantic similarity of GO terms
    • Wang Z, Du Z, Payattakool R, Philip Y, Chen F. A new method to measure the semantic similarity of GO terms. Bioinformatics. 2007; 23:1274-81.
    • (2007) Bioinformatics , vol.23 , pp. 1274-1281
    • Wang, Z.1    Du, Z.2    Payattakool, R.3    Philip, Y.4    Chen, F.5
  • 9
    • 84961595200 scopus 로고    scopus 로고
    • An integrative approach for measuring semantic similarities using gene ontology
    • Peng J, Li H, Jiang Q, Wang Y, Chen J. An integrative approach for measuring semantic similarities using gene ontology. BMC Syst Biol. 2014; 8(Sup 5):S8.
    • (2014) BMC Syst Biol , vol.8 , pp. S8
    • Peng, J.1    Li, H.2    Jiang, Q.3    Wang, Y.4    Chen, J.5
  • 10
    • 84901254443 scopus 로고    scopus 로고
    • Towards integrative gene functional similarity measurement
    • Peng J, Wang Y, Chen J. Towards integrative gene functional similarity measurement. BMC Bioinformatics. 2014; 15(Sup 2):S5.
    • (2014) BMC Bioinformatics , vol.15 , pp. S5
    • Peng, J.1    Wang, Y.2    Chen, J.3
  • 11
    • 84905044212 scopus 로고    scopus 로고
    • GOssTo: a user-friendly stand-alone and web tool for calculating semantic similarities on the Gene Ontology
    • Caniza H, et al. GOssTo: a user-friendly stand-alone and web tool for calculating semantic similarities on the Gene Ontology. Bioinformatics; 30(15):2235-6.
    • Bioinformatics , vol.30 , Issue.15 , pp. 2235-2236
    • Caniza, H.1
  • 12
    • 68249098747 scopus 로고    scopus 로고
    • ProteinOn: A web tool for protein semantic similarity
    • Technical reports: Universidade de Lisboa;
    • Faria D, Pesquita C, Couto FM, Falcão A. ProteinOn: A web tool for protein semantic similarity. Technical reports: Universidade de Lisboa; 2007.
    • (2007)
    • Faria, D.1    Pesquita, C.2    Couto, F.M.3    Falcão, A.4
  • 13
    • 75549086209 scopus 로고    scopus 로고
    • FunSimMat update: new features for exploring functional similarity
    • Schlicker A, Albrecht M. FunSimMat update: new features for exploring functional similarity. Nucleic Acids Res. 2010; 38(suppl 1):D244-8.
    • (2010) Nucleic Acids Res , vol.38 , pp. D244-D248
    • Schlicker, A.1    Albrecht, M.2
  • 14
    • 67849104643 scopus 로고    scopus 로고
    • G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery
    • Du Z, et al. G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery. Nucleic Acids Res. 2009; 37(suppl 2):W345-9.
    • (2009) Nucleic Acids Res , vol.37 , pp. W345-W349
    • Du, Z.1
  • 15
    • 77956548953 scopus 로고    scopus 로고
    • Cytoscape Web: an interactive web-based network browser
    • Lopes CT, et al. Cytoscape Web: an interactive web-based network browser. Bioinformatics. 2010; 26(18):2347-8.
    • (2010) Bioinformatics , vol.26 , Issue.18 , pp. 2347-2348
    • Lopes, C.T.1
  • 16
    • 84984714403 scopus 로고    scopus 로고
    • Visualizing and Distances Using GO.
    • Gentleman R. Visualizing and Distances Using GO. 2005. http://bioconductor.org/packages/release/bioc/vignettes/GOstats/inst/doc/GOvis.pdf.
    • (2005)
    • Gentleman, R.1
  • 17
    • 79956272259 scopus 로고    scopus 로고
    • Evaluating GO-based semantic similarity measures
    • Pesquita C, et al. Evaluating GO-based semantic similarity measures. Annu Bio-Ontologies Meeting. 2007; 37:38-40.
    • (2007) Annu Bio-Ontologies Meeting , vol.37 , pp. 38-40
    • Pesquita, C.1
  • 18
    • 3042514191 scopus 로고    scopus 로고
    • Coexpression analysis of human genes across many microarray data sets
    • Lee H, Hsu A, Sajdak J, Qin J, Pavlidis P. Coexpression analysis of human genes across many microarray data sets. Genome Res. 2004; 14:1085-94.
    • (2004) Genome Res , vol.14 , pp. 1085-1094
    • Lee, H.1    Hsu, A.2    Sajdak, J.3    Qin, J.4    Pavlidis, P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.