메뉴 건너뛰기




Volumn 10, Issue 12, 2015, Pages 2004-2015

Next-generation diagnostics and disease-gene discovery with the Exomiser

(13)  Smedley, Damian a   Jacobsen, Julius O B a   Jäger, Marten b   Köhler, Sebastian b   Holtgrewe, Manuel b,c   Schubach, Max b   Siragusa, Enrico b,c,d   Zemojtel, Tomasz b,e   Buske, Orion J f,g   Washington, Nicole L h   Bone, William P i   Haendel, Melissa A j   Robinson, Peter N b,d,k  


Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; COMPUTER PROGRAM; DIGITAL FILTERING; EXOME; GENE IDENTIFICATION; GENETIC ASSOCIATION; HUMAN; NEXT GENERATION SEQUENCING; NONHUMAN; PATHOGENICITY; PEDIGREE ANALYSIS; PHENOTYPE; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; DNA SEQUENCE; GENETIC SCREENING; HIGH THROUGHPUT SEQUENCING; PROCEDURES;

EID: 84947907035     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2015.124     Document Type: Article
Times cited : (263)

References (78)
  • 1
    • 73349110071 scopus 로고    scopus 로고
    • Exome sequencing identifes the cause of a Mendelian disorder
    • Ng, S.B. et al. Exome sequencing identifes the cause of a Mendelian disorder. Nat. Genet. 42, 30-35 (2010).
    • (2010) Nat. Genet. , vol.42 , pp. 30-35
    • Ng, S.B.1
  • 2
    • 70249111091 scopus 로고    scopus 로고
    • Targeted capture and massively parallel sequencing of 12 human exomes
    • Ng, S.B. et al. Targeted capture and massively parallel sequencing of 12 human exomes. Nature 461, 272-276 (2009).
    • (2009) Nature , vol.461 , pp. 272-276
    • Ng, S.B.1
  • 3
    • 84885785987 scopus 로고    scopus 로고
    • Clinical whole-exome sequencing for the diagnosis of Mendelian disorders
    • Yang, Y. et al. Clinical whole-exome sequencing for the diagnosis of Mendelian disorders. N. Engl. J. Med. 369, 1502-1511 (2013).
    • (2013) N. Engl. J. Med. , vol.369 , pp. 1502-1511
    • Yang, Y.1
  • 4
    • 84918771753 scopus 로고    scopus 로고
    • Molecular fndings among patients referred for clinical whole-exome sequencing
    • Yang, Y. et al. Molecular fndings among patients referred for clinical whole-exome sequencing. JAMA 312, 1870-1879 (2014).
    • (2014) JAMA , vol.312 , pp. 1870-1879
    • Yang, Y.1
  • 5
    • 84907284564 scopus 로고    scopus 로고
    • Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome
    • Zemojtel, T. et al. Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome. Sci. Transl. Med. 6, 252ra123 (2014).
    • (2014) Sci. Transl. Med. , vol.6 , pp. 252ra123
    • Zemojtel, T.1
  • 6
    • 84915803267 scopus 로고    scopus 로고
    • Effectiveness of exome and genome sequencing guided by acuity of illness for diagnosis of neurodevelopmental disorders
    • Soden, S.E. et al. Effectiveness of exome and genome sequencing guided by acuity of illness for diagnosis of neurodevelopmental disorders. Sci. Transl. Med. 6, 265ra168 (2014).
    • (2014) Sci. Transl. Med. , vol.6 , pp. 265ra168
    • Soden, S.E.1
  • 7
    • 84884416457 scopus 로고    scopus 로고
    • Rare-disease genetics in the era of next-generation sequencing: Discovery to translation
    • Boycott, K.M., Vanstone, M.R., Bulman, D.E. & MacKenzie, A.E. Rare-disease genetics in the era of next-generation sequencing: discovery to translation. Nat. Rev. Genet. 14, 681-691 (2013).
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 681-691
    • Boycott, K.M.1    Vanstone, M.R.2    Bulman, D.E.3    MacKenzie, A.E.4
  • 8
    • 79960266560 scopus 로고    scopus 로고
    • Strategies for exome and genome sequence data analysis in disease-gene discovery projects
    • Robinson, P.N., Krawitz, P. & Mundlos, S. Strategies for exome and genome sequence data analysis in disease-gene discovery projects. Clin. Genet. 80, 127-132 (2011).
    • (2011) Clin. Genet. , vol.80 , pp. 127-132
    • Robinson, P.N.1    Krawitz, P.2    Mundlos, S.3
  • 10
    • 84897456458 scopus 로고    scopus 로고
    • MutationTaster2: Mutation prediction for the deep-sequencing age
    • Schwarz, J.M., Cooper, D.N., Schuelke, M. & Seelow, D. MutationTaster2: mutation prediction for the deep-sequencing age. Nat. Methods 11, 361-362 (2014).
    • (2014) Nat. Methods , vol.11 , pp. 361-362
    • Schwarz, J.M.1    Cooper, D.N.2    Schuelke, M.3    Seelow, D.4
  • 11
    • 84873486397 scopus 로고    scopus 로고
    • Predicting Mendelian disease-causing non-synonymous single nucleotide variants in exome sequencing studies
    • Li, M.X. et al. Predicting Mendelian disease-causing non-synonymous single nucleotide variants in exome sequencing studies. PLoS Genet. 9, e1003143 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003143
    • Li, M.X.1
  • 12
    • 78049416608 scopus 로고    scopus 로고
    • The characterization of twenty sequenced human genomes
    • Pelak, K. et al. The characterization of twenty sequenced human genomes. PLoS Genet. 6, e1001111 (2010).
    • (2010) PLoS Genet. , vol.6 , pp. e1001111
    • Pelak, K.1
  • 13
    • 84863116742 scopus 로고    scopus 로고
    • A systematic survey of loss-of-function variants in human protein-coding genes
    • MacArthur, D.G. et al. A systematic survey of loss-of-function variants in human protein-coding genes. Science 335, 823-828 (2012).
    • (2012) Science , vol.335 , pp. 823-828
    • MacArthur, D.G.1
  • 14
    • 84863987708 scopus 로고    scopus 로고
    • Computational tools for prioritizing candidate genes: Boosting disease gene discovery
    • Moreau, Y. & Tranchevent, L.C. Computational tools for prioritizing candidate genes: boosting disease gene discovery. Nat. Rev. Genet. 13, 523-546 (2012).
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 523-546
    • Moreau, Y.1    Tranchevent, L.C.2
  • 15
    • 84898405421 scopus 로고    scopus 로고
    • The utility of the traditional medical genetics diagnostic evaluation in the context of next-generation sequencing for undiagnosed genetic disorders
    • Shashi, V. et al. The utility of the traditional medical genetics diagnostic evaluation in the context of next-generation sequencing for undiagnosed genetic disorders. Genet. Med. 16, 176-182 (2014).
    • (2014) Genet. Med. , vol.16 , pp. 176-182
    • Shashi, V.1
  • 16
    • 84868686559 scopus 로고    scopus 로고
    • Diagnostic exome sequencing in persons with severe intellectual disability
    • de Ligt, J. et al. Diagnostic exome sequencing in persons with severe intellectual disability. N. Engl. J. Med. 367, 1921-1929 (2012).
    • (2012) N. Engl. J. Med. , vol.367 , pp. 1921-1929
    • De Ligt, J.1
  • 17
    • 84938329175 scopus 로고    scopus 로고
    • The infuence of disease categories on gene candidate predictions from model organism phenotypes
    • Oellrich, A. et al. The infuence of disease categories on gene candidate predictions from model organism phenotypes. J. Biomed. Semantics 5, S4 (2014).
    • (2014) J. Biomed. Semantics , vol.5 , pp. S4
    • Oellrich, A.1
  • 18
    • 84923169896 scopus 로고    scopus 로고
    • Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research
    • Köhler, S. et al. Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research. F1000Res. 2, 30 (2013).
    • (2013) F1000Res. , vol.2 , pp. 30
    • Köhler, S.1
  • 19
    • 72949116593 scopus 로고    scopus 로고
    • Linking human diseases to animal models using ontology-based phenotype annotation
    • Washington, N.L. et al. Linking human diseases to animal models using ontology-based phenotype annotation. PLoS Biol. 7, e1000247 (2009).
    • (2009) PLoS Biol. , vol.7 , pp. e1000247
    • Washington, N.L.1
  • 20
    • 41549139527 scopus 로고    scopus 로고
    • Walking the interactome for prioritization of candidate disease genes
    • Köhler, S., Bauer, S., Horn, D. & Robinson, P.N. Walking the interactome for prioritization of candidate disease genes. Am. J. Hum. Genet. 82, 949-958 (2008).
    • (2008) Am. J. Hum. Genet. , vol.82 , pp. 949-958
    • Köhler, S.1    Bauer, S.2    Horn, D.3    Robinson, P.N.4
  • 21
    • 84911363589 scopus 로고    scopus 로고
    • Walking the interactome for candidate prioritization in exome sequencing studies of Mendelian diseases
    • Smedley, D. et al. Walking the interactome for candidate prioritization in exome sequencing studies of Mendelian diseases. Bioinformatics 30, 3215-3222 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 3215-3222
    • Smedley, D.1
  • 22
    • 84892960345 scopus 로고    scopus 로고
    • A novel null homozygous mutation confrms CACNA2D2 as a gene mutated in epileptic encephalopathy
    • Pippucci, T. et al. A novel null homozygous mutation confrms CACNA2D2 as a gene mutated in epileptic encephalopathy. PLoS ONE 8, e82154 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e82154
    • Pippucci, T.1
  • 23
    • 84922428462 scopus 로고    scopus 로고
    • Identifcation of two novel mutations in FAM136A and DTNA genes in autosomal-dominant familial Meniere's disease
    • Requena, T. et al. Identifcation of two novel mutations in FAM136A and DTNA genes in autosomal-dominant familial Meniere's disease. Hum. Mol. Genet. 24, 1119-1126 (2015).
    • (2015) Hum. Mol. Genet. , vol.24 , pp. 1119-1126
    • Requena, T.1
  • 24
    • 84939635642 scopus 로고    scopus 로고
    • Enhanced utility of family-centered diagnostic exome sequencing with inheritance model-based analysis: Results from 500 unselected families with undiagnosed genetic conditions
    • Farwell, K.D. et al. Enhanced utility of family-centered diagnostic exome sequencing with inheritance model-based analysis: results from 500 unselected families with undiagnosed genetic conditions. Genet. Med. 17, 578-586 (2015).
    • (2015) Genet. Med. , vol.17 , pp. 578-586
    • Farwell, K.D.1
  • 25
    • 84924169727 scopus 로고    scopus 로고
    • York platelet syndrome is a CRAC channelopathy due to gain-of-function mutations in STIM1
    • Markello, T. et al. York platelet syndrome is a CRAC channelopathy due to gain-of-function mutations in STIM1. Mol. Genet. Metab. 114, 474-482 (2015).
    • (2015) Mol. Genet. Metab. , vol.114 , pp. 474-482
    • Markello, T.1
  • 26
    • 79960405019 scopus 로고    scopus 로고
    • The variant call format and VCFtools
    • Danecek, P. et al. The variant call format and VCFtools. Bioinformatics 27, 2156-2158 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 2156-2158
    • Danecek, P.1
  • 27
    • 84898793892 scopus 로고    scopus 로고
    • Jannovar: A Java library for exome annotation
    • Jäger, M. et al. Jannovar: a java library for exome annotation. Hum. Mutat. 35, 548-555 (2014).
    • (2014) Hum. Mutat. , vol.35 , pp. 548-555
    • Jäger, M.1
  • 28
    • 84884902321 scopus 로고    scopus 로고
    • DeNovoGear: De novo indel and point mutation discovery and phasing
    • Ramu, A. et al. DeNovoGear: de novo indel and point mutation discovery and phasing. Nat. Methods 10, 985-987 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 985-987
    • Ramu, A.1
  • 29
    • 80052833627 scopus 로고    scopus 로고
    • Reducing the exome search space for Mendelian diseases using genetic linkage analysis of exome genotypes
    • Smith, K.R. et al. Reducing the exome search space for Mendelian diseases using genetic linkage analysis of exome genotypes. Genome Biol. 12, R85 (2011).
    • (2011) Genome Biol. , vol.12 , pp. R85
    • Smith, K.R.1
  • 30
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • Abecasis, G.R. et al. A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010).
    • (2010) Nature , vol.467 , pp. 1061-1073
    • Abecasis, G.R.1
  • 32
    • 78651286166 scopus 로고    scopus 로고
    • The Mouse Genome Database (MGD): Premier model organism resource for mammalian genomics and genetics
    • Blake, J.A., Bult, C.J., Kadin, J.A., Richardson, J.E. & Eppig, J.T. The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics. Nucleic Acids Res. 39, D842-D848 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. D842-D848
    • Blake, J.A.1    Bult, C.J.2    Kadin, J.A.3    Richardson, J.E.4    Eppig, J.T.5
  • 33
    • 84891757565 scopus 로고    scopus 로고
    • The International Mouse Phenotyping Consortium Web Portal, a unifed point of access for knockout mice and related phenotyping data
    • Koscielny, G. et al. The International Mouse Phenotyping Consortium Web Portal, a unifed point of access for knockout mice and related phenotyping data. Nucleic Acids Res. 42, D802-D809 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. D802-D809
    • Koscielny, G.1
  • 34
    • 70350474767 scopus 로고    scopus 로고
    • Clinical diagnostics in human genetics with semantic similarity searches in ontologies
    • Köhler, S. et al. Clinical diagnostics in human genetics with semantic similarity searches in ontologies. Am. J. Hum. Genet. 85, 457-464 (2009).
    • (2009) Am. J. Hum. Genet. , vol.85 , pp. 457-464
    • Köhler, S.1
  • 35
    • 33845545435 scopus 로고    scopus 로고
    • The modular nature of genetic diseases
    • Oti, M. & Brunner, H.G. The modular nature of genetic diseases. Clin. Genet. 71, 1-11 (2007).
    • (2007) Clin. Genet. , vol.71 , pp. 1-11
    • Oti, M.1    Brunner, H.G.2
  • 36
    • 84946047645 scopus 로고    scopus 로고
    • Gene: A gene-centered information resource at NCBI
    • Brown, G.R. et al. Gene: a gene-centered information resource at NCBI. Nucleic Acids Res. 43, D36-D42 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. D36-D42
    • Brown, G.R.1
  • 37
    • 84907961999 scopus 로고    scopus 로고
    • The zebrafsh anatomy and stage ontologies: Representing the anatomy and development of Danio rerio
    • Van Slyke, C.E., Bradford, Y.M., Westerfeld, M. & Haendel, M.A. The zebrafsh anatomy and stage ontologies: representing the anatomy and development of Danio rerio. J. Biomed. Semantics 5, 12 (2014).
    • (2014) J. Biomed. Semantics , vol.5 , pp. 12
    • Van Slyke, C.E.1    Bradford, Y.M.2    Westerfeld, M.3    Haendel, M.A.4
  • 38
    • 84891749517 scopus 로고    scopus 로고
    • The Human Phenotype Ontology project: Linking molecular biology and disease through phenotype data
    • Köhler, S. et al. The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res. 42, D966-D974 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. D966-D974
    • Köhler, S.1
  • 39
    • 84946081339 scopus 로고    scopus 로고
    • OMIM.org: Online Mendelian Inheritance in Man (OMIM(R)), an online catalog of human genes and genetic disorders
    • Amberger, J.S., Bocchini, C.A., Schiettecatte, F., Scott, A.F. & Hamosh, A. OMIM.org: Online Mendelian Inheritance in Man (OMIM(R)), an online catalog of human genes and genetic disorders. Nucleic Acids Res. 43, D789-D798 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. D789-D798
    • Amberger, J.S.1    Bocchini, C.A.2    Schiettecatte, F.3    Scott, A.F.4    Hamosh, A.5
  • 40
    • 84864358886 scopus 로고    scopus 로고
    • Representation of rare diseases in health information systems: The Orphanet approach to serve a wide range of end users
    • Rath, A. et al. Representation of rare diseases in health information systems: the Orphanet approach to serve a wide range of end users. Hum. Mutat. 33, 803-808 (2012).
    • (2012) Hum. Mutat. , vol.33 , pp. 803-808
    • Rath, A.1
  • 41
    • 84954358609 scopus 로고    scopus 로고
    • The Human Phenotype Ontology: A tool for annotating and analyzing human hereditary disease
    • Robinson, P.N. et al. The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease. Am. J. Hum. Genet. 83, 610-615 (2008).
    • (2008) Am. J. Hum. Genet. , vol.83 , pp. 610-615
    • Robinson, P.N.1
  • 42
    • 84946735654 scopus 로고    scopus 로고
    • Gene Ontology Consortium. Gene Ontology Consortium: Going forward
    • Gene Ontology Consortium. Gene Ontology Consortium: going forward. Nucleic Acids Res. 43, D1049-D1056 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. D1049-D1056
  • 43
    • 77951018428 scopus 로고    scopus 로고
    • Entity/quality-based logical defnitions for the human skeletal phenome using PATO
    • Gkoutos, G.V. et al. Entity/quality-based logical defnitions for the human skeletal phenome using PATO. Conf. Proc. IEEE Eng. Med. Biol. Soc. 2009, 7069-7072 (2009).
    • (2009) Conf. Proc. IEEE Eng. Med. Biol. Soc. , vol.2009 , pp. 7069-7072
    • Gkoutos, G.V.1
  • 44
    • 84876515907 scopus 로고    scopus 로고
    • STRING v9.1: Protein-protein interaction networks, with increased coverage and integration
    • Franceschini, A. et al. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 41, D808-D815 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. D808-D815
    • Franceschini, A.1
  • 45
    • 85082150933 scopus 로고    scopus 로고
    • Computational evaluation of exome sequence data using human and model organism phenotypes improves diagnostic effciency
    • the press
    • Bone W.P. et al. Computational evaluation of exome sequence data using human and model organism phenotypes improves diagnostic effciency. Genet. Med. (in the press).
    • Genet. Med
    • Bone, W.P.1
  • 46
    • 85028106080 scopus 로고    scopus 로고
    • The National Institutes of Health Undiagnosed Diseases Program: Insights into rare diseases
    • Gahl, W.A. et al. The National Institutes of Health Undiagnosed Diseases Program: insights into rare diseases. Genet. Med. 14, 51-59 (2012).
    • (2012) Genet. Med. , vol.14 , pp. 51-59
    • Gahl, W.A.1
  • 47
    • 84946027595 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • NCBI Resource Coordinators. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 43, D6-D17 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. D6-D17
    • NCBI Resource Coordinators1
  • 48
    • 77955151784 scopus 로고    scopus 로고
    • MutationTaster evaluates disease-causing potential of sequence alterations
    • Schwarz, J.M., Rodelsperger, C., Schuelke, M. & Seelow, D. MutationTaster evaluates disease-causing potential of sequence alterations. Nat. Methods 7, 575-576 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 575-576
    • Schwarz, J.M.1    Rodelsperger, C.2    Schuelke, M.3    Seelow, D.4
  • 49
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei, I.A. et al. A method and server for predicting damaging missense mutations. Nat. Methods 7, 248-249 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 248-249
    • Adzhubei, I.A.1
  • 50
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • Kumar, P., Henikoff, S. & Ng, P.C. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat. Protoc. 4, 1073-1081 (2009).
    • (2009) Nat. Protoc. , vol.4 , pp. 1073-1081
    • Kumar, P.1    Henikoff, S.2    Ng, P.C.3
  • 51
    • 84881613239 scopus 로고    scopus 로고
    • DbNSFP v2.0: A database of human non-synonymous SNVs and their functional predictions and annotations
    • Liu, X., Jian, X. & Boerwinkle, E. dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotations. Hum. Mutat. 34, E2393-E2402 (2013).
    • (2013) Hum. Mutat. , vol.34 , pp. E2393-E2402
    • Liu, X.1    Jian, X.2    Boerwinkle, E.3
  • 52
    • 84946100079 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: 2015 update
    • Rosenbloom, K.R. et al. The UCSC Genome Browser database: 2015 update. Nucleic Acids Res. 43, D670-D681 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. D670-D681
    • Rosenbloom, K.R.1
  • 53
    • 84901013670 scopus 로고    scopus 로고
    • Three-stage quality control strategies for DNA re-sequencing data
    • Guo, Y., Ye, F., Sheng, Q., Clark, T. & Samuels, D.C. Three-stage quality control strategies for DNA re-sequencing data. Brief. Bioinform. 15, 879-889 (2014).
    • (2014) Brief. Bioinform. , vol.15 , pp. 879-889
    • Guo, Y.1    Ye, F.2    Sheng, Q.3    Clark, T.4    Samuels, D.C.5
  • 54
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 55
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 56
    • 84875312984 scopus 로고    scopus 로고
    • Low concordance of multiple variant-calling pipelines: Practical implications for exome and genome sequencing
    • O'Rawe, J. et al. Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome Med. 5, 28 (2013).
    • (2013) Genome Med. , vol.5 , pp. 28
    • O'Rawe, J.1
  • 57
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang, K., Li, M. & Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 38, e164 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. e164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 58
    • 84946037477 scopus 로고    scopus 로고
    • Ensembl 2015
    • Cunningham, F. et al. Ensembl 2015. Nucleic Acids Res. 43, D662-D669 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. D662-D669
    • Cunningham, F.1
  • 59
    • 84904818189 scopus 로고    scopus 로고
    • A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies
    • Aleman, A., Garcia-Garcia, F., Salavert, F., Medina, I. & Dopazo, J. A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies. Nucleic Acids Res. 42, W88-W93 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. W88-W93
    • Aleman, A.1    Garcia-Garcia, F.2    Salavert, F.3    Medina, I.4    Dopazo, J.5
  • 60
    • 84875069273 scopus 로고    scopus 로고
    • EVA: Exome Variation Analyzer, an effcient and versatile tool for fltering strategies in medical genomics
    • Coutant, S. et al. EVA: Exome Variation Analyzer, an effcient and versatile tool for fltering strategies in medical genomics. BMC Bioinformatics 13 Suppl 14: S9 (2012).
    • (2012) BMC Bioinformatics , vol.13 , pp. S9
    • Coutant, S.1
  • 61
    • 84866551236 scopus 로고    scopus 로고
    • Annotate-it: A Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease
    • Sifrim, A. et al. Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease. Genome Med. 4, 73 (2012).
    • (2012) Genome Med. , vol.4 , pp. 73
    • Sifrim, A.1
  • 62
    • 84898783004 scopus 로고    scopus 로고
    • Prioritizing disease-linked variants, genes, and pathways with an interactive whole-genome analysis pipeline
    • Lee, I.H. et al. Prioritizing disease-linked variants, genes, and pathways with an interactive whole-genome analysis pipeline. Hum. Mutat. 35, 537-547 (2014).
    • (2014) Hum. Mutat. , vol.35 , pp. 537-547
    • Lee, I.H.1
  • 63
    • 84860147579 scopus 로고    scopus 로고
    • A comprehensive framework for prioritizing variants in exome sequencing studies of Mendelian diseases
    • Li, M.X., Gui, H.S., Kwan, J.S., Bao, S.Y. & Sham, P.C. A comprehensive framework for prioritizing variants in exome sequencing studies of Mendelian diseases. Nucleic Acids Res. 40, e53 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. e53
    • Li, M.X.1    Gui, H.S.2    Kwan, J.S.3    Bao, S.Y.4    Sham, P.C.5
  • 64
    • 84891831893 scopus 로고    scopus 로고
    • Rare-variant extensions of the transmission disequilibrium test: Application to autism exome sequence data
    • He, Z. et al. Rare-variant extensions of the transmission disequilibrium test: application to autism exome sequence data. Am. J. Hum. Genet. 94, 33-46 (2014).
    • (2014) Am. J. Hum. Genet. , vol.94 , pp. 33-46
    • He, Z.1
  • 65
    • 83555165268 scopus 로고    scopus 로고
    • Finding disease variants in Mendelian disorders by using sequence data: Methods and applications
    • Ionita-Laza, I. et al. Finding disease variants in Mendelian disorders by using sequence data: methods and applications. Am. J. Hum. Genet. 89, 701-712 (2011).
    • (2011) Am. J. Hum. Genet. , vol.89 , pp. 701-712
    • Ionita-Laza, I.1
  • 66
    • 80051547469 scopus 로고    scopus 로고
    • A probabilistic disease-gene fnder for personal genomes
    • Yandell, M. et al. A probabilistic disease-gene fnder for personal genomes. Genome Res. 21, 1529-1542 (2011).
    • (2011) Genome Res. , vol.21 , pp. 1529-1542
    • Yandell, M.1
  • 67
    • 84898743768 scopus 로고    scopus 로고
    • Phevor combines multiple biomedical ontologies for accurate identifcation of disease-causing alleles in single individuals and small nuclear families
    • Singleton, M.V. et al. Phevor combines multiple biomedical ontologies for accurate identifcation of disease-causing alleles in single individuals and small nuclear families. Am. J. Hum. Genet. 94, 599-610 (2014).
    • (2014) Am. J. Hum. Genet. , vol.94 , pp. 599-610
    • Singleton, M.V.1
  • 68
    • 84887041034 scopus 로고    scopus 로고
    • EXtasy: Variant prioritization by genomic data fusion
    • Sifrim, A. et al. eXtasy: variant prioritization by genomic data fusion. Nat. Methods 10, 1083-1084 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 1083-1084
    • Sifrim, A.1
  • 69
    • 84904445954 scopus 로고    scopus 로고
    • Clinical phenotype-based gene prioritization: An initial study using semantic similarity and the human phenotype ontology
    • Masino, A.J. et al. Clinical phenotype-based gene prioritization: an initial study using semantic similarity and the human phenotype ontology. BMC Bioinformatics 15, 248 (2014).
    • (2014) BMC Bioinformatics , vol.15 , pp. 248
    • Masino, A.J.1
  • 70
    • 84921633944 scopus 로고    scopus 로고
    • Phen-Gen: Combining phenotype and genotype to analyze rare disorders
    • Javed, A., Agrawal, S. & Ng, P.C. Phen-Gen: combining phenotype and genotype to analyze rare disorders. Nat. Methods 11, 935-937 (2014).
    • (2014) Nat. Methods , vol.11 , pp. 935-937
    • Javed, A.1    Agrawal, S.2    Ng, P.C.3
  • 71
    • 84864332063 scopus 로고    scopus 로고
    • Deep phenotyping for precision medicine
    • Robinson, P.N. Deep phenotyping for precision medicine. Hum. Mutat. 33, 777-780 (2012).
    • (2012) Hum. Mutat. , vol.33 , pp. 777-780
    • Robinson, P.N.1
  • 72
    • 84907291749 scopus 로고    scopus 로고
    • Phenomics and the interpretation of personal genomes
    • Petrovski, S. & Goldstein, D.B. Phenomics and the interpretation of personal genomes. Sci. Transl. Med. 6, 254fs35 (2014).
    • (2014) Sci. Transl. Med. , vol.6 , pp. 254fs35
    • Petrovski, S.1    Goldstein, D.B.2
  • 73
    • 84879098229 scopus 로고    scopus 로고
    • Crowdsourcing the corpasome
    • Corpas, M. Crowdsourcing the corpasome. Source Code Biol. Med. 8, 13 (2013).
    • (2013) Source Code Biol. Med. , vol.8 , pp. 13
    • Corpas, M.1
  • 74
    • 84926522440 scopus 로고    scopus 로고
    • Genetic diagnosis of developmental disorders in the DDD study: A scalable analysis of genome-wide research data
    • Wright, C.F. et al. Genetic diagnosis of developmental disorders in the DDD study: a scalable analysis of genome-wide research data. Lancet 385, 1305-1314 (2014).
    • (2014) Lancet , vol.385 , pp. 1305-1314
    • Wright, C.F.1
  • 75
    • 77954255613 scopus 로고    scopus 로고
    • The ontology lookup service: Bigger and better
    • Cote, R. et al. The ontology lookup service: bigger and better. Nucleic Acids Res. 38, W155-W160 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. W155-W160
    • Cote, R.1
  • 76
    • 79959988943 scopus 로고    scopus 로고
    • BioPortal: Enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
    • Whetzel, P.L. et al. BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Res. 39, W541-W545 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. W541-W545
    • Whetzel, P.L.1
  • 77
    • 84880508099 scopus 로고    scopus 로고
    • PhenoTips: Patient phenotyping software for clinical and research use
    • Girdea, M. et al. PhenoTips: patient phenotyping software for clinical and research use. Hum. Mutat. 34, 1057-1065 (2013).
    • (2013) Hum. Mutat. , vol.34 , pp. 1057-1065
    • Girdea, M.1
  • 78
    • 84941878194 scopus 로고    scopus 로고
    • How good is your phenotyping? Methods for quality assessment
    • Washington, N.L. et al. How good is your phenotyping? Methods for quality assessment. In. Proceedings of Phenotype Day 2014@ISMB 2014 http://phenoday2014.bio-lark.org/pdf/6.pdf (2014).
    • (2014) Proceedings of Phenotype Day 2014@ISMB 2014
    • Washington, N.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.