A persistently infecting coronavirus in hibernating Myotis lucifugus, the North American little brown bat

Journal of General Virology

Volumn 98, Issue 9, 2017, Pages 2297-2309

  Subudhi, Sonu ^a   Rapin, Noreen ^a   Bollinger, Trent K ^a   Hill, Janet E ^a   Donaldson, Michael E ^b   Davy, Christina M ^b   Warnecke, Lisa ^c   Turner, James M ^c   Kyle, Christopher J ^b   Willis, Craig K R ^c   Misra, Vikram ^a  

^a UNIVERSITY OF SASKATCHEWAN   (Canada)

^b TRENT UNIVERSITY   (Canada)

^c UNIVERSITY OF WINNIPEG   (Canada)

Author keywords

Bats; Coronavirus; Myotis lucifugus; Persistent infection

Indexed keywords

VIRUS RNA;

ALPHACORONAVIRUS; AMINO ACID SEQUENCE; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BRONCHUS EPITHELIUM; CLADISTICS; CONTROLLED STUDY; CORONAVIRIDAE; CORONAVIRIDAE INFECTION; GENE AMPLIFICATION; GENE SEQUENCE; HIBERNATION; HISTOPATHOLOGY; INFLAMMATION; INTESTINE; LUNG; MYOTIS LUCIFUGUS; NONHUMAN; NORTH AMERICAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PREVALENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; VIRUS DETECTION; VIRUS GENOME; VIRUS IDENTIFICATION; ANIMAL; BAT; CORONAVIRUS INFECTION; GENETICS; ISOLATION AND PURIFICATION; PATHOLOGY; PHYSIOLOGY; UNITED STATES; VETERINARY; VIROLOGY;

ANIMALS; CHIROPTERA; CORONAVIRUS; CORONAVIRUS INFECTIONS; LUNG; PHYLOGENY; UNITED STATES;

EID: 85029604011     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/jgv.0.000898     Document Type: Article

References (44)

1. Ge XY, Li JL, Yang XL, Chmura AA, Zhu G et al. Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor. Nature 2013;503:535-538.
2. Corman VM, Ithete NL, Richards LR, Schoeman MC, Preiser W et al. Rooting the phylogenetic tree of middle East respiratory syndrome coronavirus by characterization of a conspecific virus from an African bat. J Virol 2014;88:11297-11303.
3. Ithete NL, Stoffberg S, Corman VM, Cottontail VM, Richards LR et al. Close relative of human Middle East respiratory syndrome coronavirus in bat, South Africa. Emerg Infect Dis 2013;19:1697-1699.
4. Memish ZA, Mishra N, Olival KJ, Fagbo SF, Kapoor V et al. Middle East respiratory syndrome coronavirus in bats, Saudi Arabia. Emerg Infect Dis 2013;19:1819-1823.
5. Yang Y, du L, Liu C, Wang L, Ma C et al. Receptor usage and cell entry of bat coronavirus HKU4 provide insight into bat-to-human transmission of MERS coronavirus. Proc Natl Acad Sci USA 2014;111:12516-12521.
6. WHO. 2003. Summary of probable SARS cases with onset of illness from 1 November 2002 to 31 July 2003 World Health Organization. [Based on data as of 31 December 2003]. Available from www.who.int/csr/sars/country/table2004_04_21/en/.
7. WHO. 2012. WHO updates on MERS World Health Organization. [Since September 2012 until September 6]. Available from www.who.int/emergencies/mers-cov/en/.
8. Huang YW, Dickerman AW, Piñeyro P, Li L, Fang L et al. Origin, evolution, and genotyping of emergent porcine epidemic diarrhea virus strains in the United States. MBio 2013;4:e00737-13.
9. Paarlberg PL. Updated estimated economic welfare impacts of porcine epidemic diarrhea virus (PEDV). Department of Agricultural Economics, Purdue University; 2014.
10. Han HJ, Wen HL, Zhou CM, Chen FF, Luo LM et al. Bats as reservoirs of severe emerging infectious diseases. Virus Res 2015;205:1-6.
11. Hu B, Ge X, Wang LF, Shi Z. Bat origin of human coronaviruses. Virol J 2015;12:221.
12. de Wit E, van Doremalen N, Falzarano D, Munster VJ. SARS and MERS: recent insights into emerging coronaviruses. Nat Rev Microbiol 2016;14:523-534.
13. Munster VJ, Adney DR, van Doremalen N, Brown VR, Miazgowicz KL et al. Replication and shedding of MERS-CoV in Jamaican fruit bats (Artibeus jamaicensis). Sci Rep 2016;6:21878.
14. Watanabe S, Masangkay JS, Nagata N, Morikawa S, Mizutani T et al. Bat coronaviruses and experimental infection of bats, the Philippines. Emerg Infect Dis 2010;16:1217-1223.
15. Gu J, Korteweg C. Pathology and pathogenesis of severe acute respiratory syndrome. Am J Pathol 2007;170:1136-1147.
16. Singh SK. Middle East respiratory syndrome virus pathogenesis. Semin Respir Crit Care Med 2016;37:572-577.
17. Madson DM, Magstadt DR, Arruda PH, Hoang H, Sun D et al. Pathogenesis of porcine epidemic diarrhea virus isolate (US/Iowa/18984/2013) in 3-week-old weaned pigs. Vet Microbiol 2014;174:60-68.
18. Jung K, Saif LJ. Porcine epidemic diarrhea virus infection: etiology, epidemiology, pathogenesis and immunoprophylaxis. Vet J 2015;204:134-143.
19. Mcguire LP, Turner JM, Warnecke L, Mcgregor G, Bollinger TK et al. White-Nose syndrome disease severity and a comparison of diagnostic methods. Ecohealth 2016;13:60-71.
20. Misra V, Dumonceaux T, Dubois J, Willis C, Nadin-Davis S et al. Detection of polyoma and corona viruses in bats of Canada. J Gen Virol 2009;90:2015-2022.
21. Warnecke L, Turner JM, Bollinger TK, Lorch JM, Misra V et al. Inoculation of bats with European geomyces destructans supports the novel pathogen hypothesis for the origin of white-nose syndrome. Proc Natl Acad Sci USA 2012;109:6999-7003.
22. Wevers BA, Van der Hoek L. Recently discovered human coronaviruses. Clin Lab Med 2009;29:715-724.
23. Osborne C, Cryan PM, O’Shea TJ, Oko LM, Ndaluka C et al. Alphacoronaviruses in New World bats: prevalence, persistence, phylogeny, and potential for interaction with humans. PLoS One 2011;6:e19156.
24. Dominguez SR, O’Shea TJ, Oko LM, Holmes KV. Detection of group 1 coronaviruses in bats in North America. Emerg Infect Dis 2007;13:1295-1300.
25. Strong JE, Wong G, Jones SE, Grolla A, Theriault S et al. Stimulation of Ebola virus production from persistent infection through activation of the Ras/MAPK pathway. Proc Natl Acad Sci USA 2008;105:17982-17987.
26. Mizutani T, Fukushi S, Saijo M, Kurane I, Morikawa S. Regulation of p90RSK phosphorylation by SARS-CoV infection in Vero E6 cells. FEBS Lett 2006;580:1417-1424.
27. Palacios G, Jabado O, Renwick N, Briese T, Lipkin WI. Severe acute respiratory syndrome coronavirus persistence in vero cells. Chin Med J 2005;118:451-459.
28. Plowright RK, Eby P, Hudson PJ, Smith IL, Westcott D et al. Ecological dynamics of emerging bat virus spillover. Proc Biol Sci 2015;282:20142124.
29. Zhao Z, Li H, Wu X, Zhong Y, Zhang K et al. Moderate mutation rate in the SARS coronavirus genome and its implications. BMC Evol Biol 2004;4:21.
30. Ge XY, Wang N, Zhang W, Hu B, Li B et al. Coexistence of multiple coronaviruses in several bat colonies in an abandoned mineshaft. Virol Sin 2016;31:31-40.
31. Lassnig C, Sanchez CM, Egerbacher M, Walter I, Majer S et al. Development of a transgenic mouse model susceptible to human coronavirus 229E. Proc Natl Acad Sci USA 2005;102:8275-8280.
32. Trujillo-Ortega ME, Beltran-Figueroa R, García-Hernandez ME, Juarez-Ramírez M, Sotomayor-Gonzalez A et al. Isolation and characterization of porcine epidemic diarrhea virus associated with the 2014 disease outbreak in Mexico: case report. BMC Vet Res 2016;12:132.
33. Field H, Jordan D, Edson D, Morris S, Melville D et al. Spatiotemporal aspects of Hendra virus infection in pteropid bats (Flying-Foxes) in Eastern Australia. PLoS One 2015;10:e0144055.
34. Plowright RK, Peel AJ, Streicker DG, Gilbert AT, Mccallum H et al. Transmission or within-host dynamics driving pulses of zoonotic viruses in reservoir-host populations. PLoS Negl Trop Dis 2016;10:e0004796.
35. Andrews S 2010. FastQC: a quality control tool for high throughput sequence data. Available Online At www.bioinformatics.babra-ham.ac.uk/projects/fastqc/.
36. Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 2014;30:2114-2120.
37. Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R et al. TopHat2:accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 2013;14:R36.
38. Cunningham F, Amode MR, Barrell D, Beal K, Billis K et al. Ensembl 2015. Nucleic Acids Res 2015;43:D662-D669.
39. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J et al. The sequence alignment/Map format and SAMtools. Bioinformatics 2009;25:2078-2079.
40. Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010;26:841-842.
41. Valderrama X, Misra V. Novel Brn3a cis-acting sequences mediate transcription of human trkA in neurons. J Neurochem 2008;105:425-435.
42. Banerjee A, Rapin N, Miller M, Griebel P, Zhou Y et al. Generation and characterization of Eptesicus fuscus (Big brown bat) kidney cell lines immortalized using the Myotis polyomavirus large T-antigen. J Virol Methods 2016;237:166-173.
43. Li KB, K-b L. CLUSTALW-MPI: CLUSTALW analysis using distributed and parallel computing. Bioinformatics 2003;19:1585-1586.
44. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016;33:1870-1874.