-
1
-
-
84861443800
-
Natural strategies for the spatial optimization of metabolism in synthetic biology
-
Agapakis, C., Boyle, P., & Silver, P. Natural strategies for the spatial optimization of metabolism in synthetic biology. Nat. Chem. Biol. 8, 527-535 (2012
-
(2012)
Nat. Chem. Biol
, vol.8
, pp. 527-535
-
-
Agapakis, C.1
Boyle, P.2
Silver, P.3
-
2
-
-
79955770162
-
Scaffold proteins: Hubs for controlling the flow of cellular information
-
Good, M., Zalatan, J., & Lim, W. Scaffold proteins: hubs for controlling the flow of cellular information. Science 332, 680-686 (2011
-
(2011)
Science
, vol.332
, pp. 680-686
-
-
Good, M.1
Zalatan, J.2
Lim, W.3
-
3
-
-
0344393408
-
Regulation of MAP kinase signaling modules by scaffold proteins in mammals
-
Morrison, D., & Davis, R. Regulation of MAP kinase signaling modules by scaffold proteins in mammals. Annu. Rev. Cell Dev. Biol. 19, 91-118 (2003
-
(2003)
Annu. Rev. Cell Dev. Biol
, vol.19
, pp. 91-118
-
-
Morrison, D.1
Davis, R.2
-
4
-
-
84877647982
-
The spatial organization of metabolism within the plant cell
-
Sweetlove, L. J., & Fernie, A. R. The spatial organization of metabolism within the plant cell. Annu. Rev. Plant Biol. 64, 723-746 (2013
-
(2013)
Annu. Rev. Plant Biol
, vol.64
, pp. 723-746
-
-
Sweetlove, L.J.1
Fernie, A.R.2
-
5
-
-
0035253217
-
Macromolecular crowding: An important but neglected aspect of the intracellular environment
-
Ellis, R. J. Macromolecular crowding: an important but neglected aspect of the intracellular environment. Curr. Opin. Struc. Biol. 11, 114-119 (2001
-
(2001)
Curr. Opin. Struc. Biol
, vol.11
, pp. 114-119
-
-
Ellis, R.J.1
-
6
-
-
33749018832
-
Crowding and confinement effects on protein diffusion in vivo
-
Konopka, M. C., Shkel, I. A., Cayley, S., & Record, M. T. Crowding and confinement effects on protein diffusion in vivo. J. Bacteriol. 188, 6115-6123 (2006
-
(2006)
J. Bacteriol
, vol.188
, pp. 6115-6123
-
-
Konopka, M.C.1
Shkel, I.A.2
Cayley, S.3
Record, M.T.4
-
7
-
-
84982851778
-
Building spatial synthetic biology with compartments, scaffolds, and communities
-
Polka, J. K., Hays, S. G., & Silver, P. A. Building spatial synthetic biology with compartments, scaffolds, and communities. Cold Spring Harb. Perspect. Biol. 8, a024018 (2016
-
(2016)
Cold Spring Harb. Perspect. Biol
, vol.8
, pp. a024018
-
-
Polka, J.K.1
Hays, S.G.2
Silver, P.A.3
-
8
-
-
0037436155
-
Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms
-
Park, S.-H., Zarrinpar, A., & Lim, W. Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms. Science 299, 1061-1064 (2003
-
(2003)
Science
, vol.299
, pp. 1061-1064
-
-
Park, S.-H.1
Zarrinpar, A.2
Lim, W.3
-
9
-
-
79960697001
-
Organization of intracellular reactions with rationally designed RNA assemblies
-
Delebecque, C., Lindner, A., Silver, P., & Aldaye, F. Organization of intracellular reactions with rationally designed RNA assemblies. Science 333, 470-474 (2011
-
(2011)
Science
, vol.333
, pp. 470-474
-
-
Delebecque, C.1
Lindner, A.2
Silver, P.3
Aldaye, F.4
-
10
-
-
33645028600
-
Folding DNA to create nanoscale shapes and patterns
-
Rothemund, P.W. Folding DNA to create nanoscale shapes and patterns. Nature 440, 297-302 (2006
-
(2006)
Nature
, vol.440
, pp. 297-302
-
-
Rothemund, P.W.1
-
11
-
-
84858151469
-
A DNA-based molecular motor that can navigate a network of tracks
-
Wickham, S. F., et al. A DNA-based molecular motor that can navigate a network of tracks. Nat. Nanotech. 7, 169-173 (2012
-
(2012)
Nat. Nanotech
, vol.7
, pp. 169-173
-
-
Wickham, S.F.1
-
12
-
-
79952602838
-
A programmable molecular robot
-
Muscat, R. A., Bath, J., & Turberfield, A. J. A programmable molecular robot. Nano Lett. 11, 982-987 (2011
-
(2011)
Nano Lett
, vol.11
, pp. 982-987
-
-
Muscat, R.A.1
Bath, J.2
Turberfield, A.J.3
-
13
-
-
77952404245
-
A proximity-based programmable DNA nanoscale assembly line
-
Gu, H., Chao, J., Xiao, S.-J., & Seeman, N. A proximity-based programmable DNA nanoscale assembly line. Nature 465, 202-205 (2010
-
(2010)
Nature
, vol.465
, pp. 202-205
-
-
Gu, H.1
Chao, J.2
Xiao, S.-J.3
Seeman, N.4
-
14
-
-
77952392836
-
Molecular robots guided by prescriptive landscapes
-
Lund, K., et al. Molecular robots guided by prescriptive landscapes. Nature 465, 206-210 (2010
-
(2010)
Nature
, vol.465
, pp. 206-210
-
-
Lund, K.1
-
15
-
-
84983347907
-
The formal language and design principles of autonomous DNA walker circuits
-
Boemo, M. A., Lucas, A. E., Turberfield, A. J., & Cardelli, L. The formal language and design principles of autonomous DNA walker circuits. ACS Synth. Biol. 5, 878-884 (2016
-
(2016)
ACS Synth. Biol
, vol.5
, pp. 878-884
-
-
Boemo, M.A.1
Lucas, A.E.2
Turberfield, A.J.3
Cardelli, L.4
-
16
-
-
84929952150
-
DNA walker circuits: Computational potential, design, and verification
-
Dannenberg, F., Kwiatkowska, M., Thachuk, C., & Turberfield, A. DNA walker circuits: computational potential, design, and verification. Nat. Comput. 14, 195-211 (2015
-
(2015)
Nat. Comput
, vol.14
, pp. 195-211
-
-
Dannenberg, F.1
Kwiatkowska, M.2
Thachuk, C.3
Turberfield, A.4
-
17
-
-
84945583173
-
Scalable design of logic circuits using an active molecular spider system
-
eds Lones, M., Tyrrell, A., Smith, S., & Fogel, G. Lecture Notes in Computer Science 9303 Springer
-
Mo, D., Lakin, M., & Stefanovic, D. Scalable design of logic circuits using an active molecular spider system. In Proc. 10th International Conference on Information Processing in Cells and Tissues (eds Lones, M., Tyrrell, A., Smith, S., & Fogel, G.) 13-28 (Lecture Notes in Computer Science 9303, Springer, 2015
-
(2015)
Proc. 10th International Conference on Information Processing in Cells and Tissues
, pp. 13-28
-
-
Mo, D.1
Lakin, M.2
Stefanovic, D.3
-
18
-
-
0034632783
-
A DNA-fuelled molecular machine made of DNA
-
Yurke, B., Turberfield, A., Mills, A., Simmel, F., & Neumann, J. A DNA-fuelled molecular machine made of DNA. Nature 406, 605-608 (2000
-
(2000)
Nature
, vol.406
, pp. 605-608
-
-
Yurke, B.1
Turberfield, A.2
Mills, A.3
Simmel, F.4
Neumann, J.5
-
19
-
-
79251621970
-
Dynamic DNA nanotechnology using stranddisplacement reactions
-
Zhang, D. Y., & Seelig, G. Dynamic DNA nanotechnology using stranddisplacement reactions. Nat. Chem. 3, 103-113 (2011
-
(2011)
Nat. Chem
, vol.3
, pp. 103-113
-
-
Zhang, D.Y.1
Seelig, G.2
-
20
-
-
33845411737
-
Enzyme-free nucleic acid logic circuits
-
Seelig, G., Soloveichik, D., Zhang, D. Y., & Winfree, E. Enzyme-free nucleic acid logic circuits. Science 314, 1585-1588 (2006
-
(2006)
Science
, vol.314
, pp. 1585-1588
-
-
Seelig, G.1
Soloveichik, D.2
Zhang, D.Y.3
Winfree, E.4
-
21
-
-
79957946108
-
Scaling up digital circuit computation with DNA strand displacement cascades
-
Qian, L., & Winfree, E. Scaling up digital circuit computation with DNA strand displacement cascades. Science 332, 1196-1201 (2011
-
(2011)
Science
, vol.332
, pp. 1196-1201
-
-
Qian, L.1
Winfree, E.2
-
22
-
-
84885463841
-
Programmable chemical controllers made from DNA
-
Chen, Y.-J. J., et al. Programmable chemical controllers made from DNA. Nat. Nanotech. 8, 755-762 (2013
-
(2013)
Nat. Nanotech
, vol.8
, pp. 755-762
-
-
Chen, Y.-J.J.1
-
23
-
-
79960650829
-
Neural network computation with DNA strand displacement cascades
-
Qian, L., Winfree, E., & Bruck, J. Neural network computation with DNA strand displacement cascades. Nature 475, 368-372 (2011
-
(2011)
Nature
, vol.475
, pp. 368-372
-
-
Qian, L.1
Winfree, E.2
Bruck, J.3
-
24
-
-
84890071282
-
Pattern transformation with DNA circuits
-
Chirieleison, S. M., Allen, P. B., Simpson, Z. B., & Ellington, A. D. Pattern transformation with DNA circuits. Nat. Chem. 5, 1000-1005 (2013
-
(2013)
Nat. Chem
, vol.5
, pp. 1000-1005
-
-
Chirieleison, S.M.1
Allen, P.B.2
Simpson, Z.B.3
Ellington, A.D.4
-
25
-
-
84881191755
-
DNA-based molecular architecture with spatially localized components
-
Muscat, R., Strauss, K., Ceze, L., & Seelig, G. DNA-based molecular architecture with spatially localized components. ACM SIGARCH Comp. Architect. News-ICSA ?13 41, 177-188 (2013
-
(2013)
ACM SIGARCH Comp Architect. News - ICSA
, vol.1341
, pp. 177-188
-
-
Muscat, R.1
Strauss, K.2
Ceze, L.3
Seelig, G.4
-
26
-
-
80053155067
-
-
eds Cardelli, L., & Shih, W. Springer
-
Chandran, H., Gopalkrishnan, N., Phillips, A., & Reif, J. in DNA Computing and Molecular Programming Vol. 6937 (eds Cardelli, L., & Shih, W.) 64-83 (Springer, 2011
-
(2011)
DNA Computing and Molecular Programming
, vol.6937
, pp. 64-83
-
-
Chandran, H.1
Gopalkrishnan, N.2
Phillips, A.3
Reif, J.4
-
27
-
-
84939817952
-
Probabilistic analysis of localized DNA hybridization circuits
-
Dalchau, N., Chandran, H., Gopalkrishnan, N., Phillips, A., & Reif, J. Probabilistic analysis of localized DNA hybridization circuits. ACS Synth. Biol. 4, 898-913 (2015
-
(2015)
ACS Synth. Biol
, vol.4
, pp. 898-913
-
-
Dalchau, N.1
Chandran, H.2
Gopalkrishnan, N.3
Phillips, A.4
Reif, J.5
-
28
-
-
84921692324
-
-
eds Murata S. & Kobayashi S. Springer
-
Qian, L., & Winfree, E. in DNA Computing and Molecular Programming (eds Murata, S., & Kobayashi, S.) 114-131 (Springer, 2014
-
(2014)
DNA Computing and Molecular Programming
, pp. 114-131
-
-
Qian, L.1
Winfree, E.2
-
29
-
-
84906660457
-
Robustness of localized DNA strand displacement cascades
-
Teichmann, M., Kopperger, E., & Simmel, F. C. Robustness of localized DNA strand displacement cascades. ACS Nano 8, 8487-8496 (2014
-
(2014)
ACS Nano
, vol.8
, pp. 8487-8496
-
-
Teichmann, M.1
Kopperger, E.2
Simmel, F.C.3
-
30
-
-
84978160583
-
Investigating the dynamics of surface-immobilized DNA nanomachines
-
Dunn, K. E., Trefzer, M. A., Johnson, S., & Tyrrell, A. M. Investigating the dynamics of surface-immobilized DNA nanomachines. Sci. Rep. 6, 29581 (2016
-
(2016)
Sci. Rep
, vol.6
, pp. 29581
-
-
Dunn, K.E.1
Trefzer, M.A.2
Johnson, S.3
Tyrrell, A.M.4
-
31
-
-
84937869889
-
Connecting localized DNA strand displacement reactions
-
Ruiz, I. M., et al. Connecting localized DNA strand displacement reactions. Nanoscale 7, 12970-12978 (2015
-
(2015)
Nanoscale
, vol.7
, pp. 12970-12978
-
-
Ruiz, I.M.1
-
32
-
-
85024129447
-
Towards a DNA nanoprocessor: Reusable tile-integrated DNA circuits
-
Gerasimova, Y., & Kolpashchikov, D. Towards a DNA nanoprocessor: reusable tile-integrated DNA circuits. Angew. Chem. Int. Ed. 128, 10400-10403 (2016
-
(2016)
Angew. Chem. Int. Ed.
, vol.128
, pp. 10400-10403
-
-
Gerasimova, Y.1
Kolpashchikov, D.2
-
33
-
-
84962459983
-
-
ICCD 2015 33rd IEEE International Conference IEEE
-
Jung, J., Hyun, D., & Shin, Y. in Proceedings of Computer Design (ICCD), 2015 33rd IEEE International Conference 259-265 (IEEE, 2015
-
(2015)
Proceedings of Computer Design
, pp. 259-265
-
-
Jung, J.1
Hyun, D.2
Shin, Y.3
-
34
-
-
7444246060
-
Triggered amplification by hybridization chain reaction
-
Dirks, R. M., & Pierce, N. A. Triggered amplification by hybridization chain reaction. Proc. Natl Acad. Sci. USA 101, 15275-15278 (2004
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 15275-15278
-
-
Dirks, R.M.1
Pierce, N.A.2
-
35
-
-
79951841779
-
Remote toehold: A mechanism for flexible control of DNA hybridization kinetics
-
Genot, A. J., Zhang, D. Y., & Bath, J. Remote toehold: a mechanism for flexible control of DNA hybridization kinetics. J. Am. Chem. Soc. 133, 2177-2182 (2011
-
(2011)
J. Am. Chem. Soc
, vol.133
, pp. 2177-2182
-
-
Genot, A.J.1
Zhang, D.Y.2
Bath, J.3
-
36
-
-
84921885735
-
-
eds Murata S. & Kobayashi S. Springer
-
Lakin, M. R., Petersen, R., Gray, K. E., & Phillips, A. in DNA Computing and Molecular Programming (eds Murata, S., & Kobayashi, S.) 132-147 (Springer, 2014
-
(2014)
DNA Computing and Molecular Programming
, pp. 132-147
-
-
Lakin, M.R.1
Petersen, R.2
Gray, K.E.3
Phillips, A.4
-
37
-
-
84961763234
-
Quantitative super-resolution imaging with qPAINT
-
Jungmann, R., Avendaño, M. S., Dai, M., & Woehrstein, J. B. Quantitative super-resolution imaging with qPAINT. Nat. Methods 13, 439-442 (2016
-
(2016)
Nat. Methods
, vol.13
, pp. 439-442
-
-
Jungmann, R.1
Avendaño, M.S.2
Dai, M.3
Woehrstein, J.B.4
-
38
-
-
84941078428
-
DNA nanotechnology from the test tube to the cell
-
Chen, Y.-J. J., Groves, B., Muscat, R. A., & Seelig, G. DNA nanotechnology from the test tube to the cell. Nat. Nanotech. 10, 748-760 (2015
-
(2015)
Nat. Nanotech
, vol.10
, pp. 748-760
-
-
Chen, Y.-J.J.1
Groves, B.2
Muscat, R.A.3
Seelig, G.4
-
39
-
-
84960084382
-
Computing in mammalian cells with nucleic acid strand exchange
-
Groves, B., Chen, Y. J., Zurla, C., & Pochekailov, S. Computing in mammalian cells with nucleic acid strand exchange. Nat. Nanotech. 11, 287-294 (2015
-
(2015)
Nat. Nanotech
, vol.11
, pp. 287-294
-
-
Groves, B.1
Chen, Y.J.2
Zurla, C.3
Pochekailov, S.4
-
40
-
-
84880372416
-
DNA computation in mammalian cells: MicroRNA logic operations
-
Hemphill, J., & Deiters, A. DNA computation in mammalian cells: microRNA logic operations. J. Am. Chem. Soc. 135, 10512-10518 (2013
-
(2013)
J. Am. Chem. Soc
, vol.135
, pp. 10512-10518
-
-
Hemphill, J.1
Deiters, A.2
-
41
-
-
78149410682
-
Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker
-
He, Y., & Liu, D. Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker. Nat. Nanotech. 5, 778-782 (2010
-
(2010)
Nat. Nanotech
, vol.5
, pp. 778-782
-
-
He, Y.1
Liu, D.2
-
42
-
-
84971201856
-
An autonomous molecular assembler for programmable chemical synthesis
-
Meng, W., et al. An autonomous molecular assembler for programmable chemical synthesis. Nat. Chem. 8, 542-548 (2016
-
(2016)
Nat. Chem
, vol.8
, pp. 542-548
-
-
Meng, W.1
-
43
-
-
84857335824
-
A logic-gated nanorobot for targeted transport of molecular payloads
-
Douglas, S. M., Bachelet, I., & Church, G. M. A logic-gated nanorobot for targeted transport of molecular payloads. Science 335, 831-834 (2012
-
(2012)
Science
, vol.335
, pp. 831-834
-
-
Douglas, S.M.1
Bachelet, I.2
Church, G.M.3
-
44
-
-
78149355812
-
NUPACK: Analysis and design of nucleic acid systems
-
Zadeh, J., et al. NUPACK: analysis and design of nucleic acid systems. J. Comput. Chem. 32, 170-173 (2011
-
(2011)
J. Comput. Chem
, vol.32
, pp. 170-173
-
-
Zadeh, J.1
|