-
1
-
-
79251621970
-
Dynamic DNA Nanotechnology Using Strand-Displacement Reactions
-
Zhang, D. Y.; Seelig, G. Dynamic DNA Nanotechnology Using Strand-Displacement Reactions Nat. Chem. 2011, 3, 103-113
-
(2011)
Nat. Chem.
, vol.3
, pp. 103-113
-
-
Zhang, D.Y.1
Seelig, G.2
-
3
-
-
72249110882
-
Control of DNA Strand Displacement Kinetics Using Toehold Exchange
-
Zhang, D. Y.; Winfree, E. Control of DNA Strand Displacement Kinetics Using Toehold Exchange J. Am. Chem. Soc. 2009, 131, 17303-17314
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 17303-17314
-
-
Zhang, D.Y.1
Winfree, E.2
-
4
-
-
84887968813
-
On the Biophysics and Kinetics of Toehold-Mediated DNA Strand Displacement
-
Srinivas, N.; Ouldridge, T. E.; Sulc, P.; Schaeffer, J. M.; Yurke, B.; Louis, A. A.; Doye, J. P. K.; Winfree, E. On the Biophysics and Kinetics of Toehold-Mediated DNA Strand Displacement Nucleic Acid Res. 2013, 41, 10641-10658
-
(2013)
Nucleic Acid Res.
, vol.41
, pp. 10641-10658
-
-
Srinivas, N.1
Ouldridge, T.E.2
Sulc, P.3
Schaeffer, J.M.4
Yurke, B.5
Louis, A.A.6
Doye, J.P.K.7
Winfree, E.8
-
5
-
-
67650657139
-
A Programming Language for Composable DNA Circuits
-
Phillips, A.; Cardelli, L. A Programming Language for Composable DNA Circuits J. R. Soc., Interface 2009, 6, S419-S436
-
(2009)
J. R. Soc., Interface
, vol.6
-
-
Phillips, A.1
Cardelli, L.2
-
6
-
-
79952998426
-
Nucleic Acid Based Molecular Devices
-
Krishnan, Y.; Simmel, F. C. Nucleic Acid Based Molecular Devices Angew. Chem., Int. Ed. 2011, 50, 3124-3156
-
(2011)
Angew. Chem., Int. Ed.
, vol.50
, pp. 3124-3156
-
-
Krishnan, Y.1
Simmel, F.C.2
-
7
-
-
33845411737
-
Enzyme-Free Nucleic Acid Logic Circuits
-
Seelig, G.; Soloveichik, D.; Zhang, D. Y.; Winfree, E. Enzyme-Free Nucleic Acid Logic Circuits Science 2006, 314, 1585-1588
-
(2006)
Science
, vol.314
, pp. 1585-1588
-
-
Seelig, G.1
Soloveichik, D.2
Zhang, D.Y.3
Winfree, E.4
-
8
-
-
79957946108
-
Scaling up Digital Circuit Computation with DNA Strand Displacement Cascades
-
Qian, L.; Winfree, E. Scaling up Digital Circuit Computation with DNA Strand Displacement Cascades Science 2011, 332, 1196-1201
-
(2011)
Science
, vol.332
, pp. 1196-1201
-
-
Qian, L.1
Winfree, E.2
-
9
-
-
38349121586
-
Programming Biomolecular Self-Assembly Pathways
-
Yin, P.; Choi, H. M.; Calvert, C. R.; Pierce, N. A. Programming Biomolecular Self-Assembly Pathways Nature 2008, 451, 318-322
-
(2008)
Nature
, vol.451
, pp. 318-322
-
-
Yin, P.1
Choi, H.M.2
Calvert, C.R.3
Pierce, N.A.4
-
10
-
-
36248972215
-
Engineering Entropy-Driven Reactions and Networks Catalyzed by DNA
-
Zhang, D. Y.; Turberfield, A. J.; Yurke, B.; Winfree, E. Engineering Entropy-Driven Reactions and Networks Catalyzed by DNA Science 2007, 318, 1121-1125
-
(2007)
Science
, vol.318
, pp. 1121-1125
-
-
Zhang, D.Y.1
Turberfield, A.J.2
Yurke, B.3
Winfree, E.4
-
11
-
-
79960650829
-
Neural Network Computation with DNA Strand Displacement Cascades
-
Qian, L.; Winfree, E.; Bruck, J. Neural Network Computation with DNA Strand Displacement Cascades Nature 2011, 475, 368-372
-
(2011)
Nature
, vol.475
, pp. 368-372
-
-
Qian, L.1
Winfree, E.2
Bruck, J.3
-
12
-
-
34447310821
-
A Universal RNAi-Based Logic Evaluator That Operates in Mammalian Cells
-
Rinaudo, K.; Bleris, L.; Maddamsetti, R.; Subramanian, S.; Weiss, R.; Benenson, Y. A Universal RNAi-Based Logic Evaluator That Operates in Mammalian Cells Nat. Biotechnol. 2007, 25, 795-801
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 795-801
-
-
Rinaudo, K.1
Bleris, L.2
Maddamsetti, R.3
Subramanian, S.4
Weiss, R.5
Benenson, Y.6
-
13
-
-
84894235116
-
Molecular Logic Gates on DNA Origami Nanostructures for MicroRNA Diagnostics
-
Wang, D.; Fu, Y.; Yan, J.; Zhao, B.; Dai, B.; Chao, J.; Liu, H.; He, D.; Zhang, Y.; Fan, C.; Song, S. Molecular Logic Gates on DNA Origami Nanostructures for MicroRNA Diagnostics Anal. Chem. 2014, 86, 1932-1936
-
(2014)
Anal. Chem.
, vol.86
, pp. 1932-1936
-
-
Wang, D.1
Fu, Y.2
Yan, J.3
Zhao, B.4
Dai, B.5
Chao, J.6
Liu, H.7
He, D.8
Zhang, Y.9
Fan, C.10
Song, S.11
-
14
-
-
80053155067
-
Localized Hybridization Circuits
-
Cardelli, L. Shih, W. Springer: Berlin
-
Chandran, H.; Gopalkrishnan, N.; Phillips, A.; Reif, J. Localized Hybridization Circuits. In DNA Computing and Molecular Programming; Cardelli, L.; Shih, W., Eds.; Springer: Berlin, 2011; Vol. 6937, pp 64-83.
-
(2011)
DNA Computing and Molecular Programming
, vol.6937
, pp. 64-83
-
-
Chandran, H.1
Gopalkrishnan, N.2
Phillips, A.3
Reif, J.4
-
15
-
-
84881191755
-
DNA-Based Molecular Architecture with Spatially Localized Components
-
ACM: Tel-Aviv, Israel
-
Muscat, R. A.; Strauss, K.; Ceze, L.; Seelig, G. DNA-Based Molecular Architecture with Spatially Localized Components. In Proceedings of the 40th Annual International Symposium on Computer Architecture; ACM: Tel-Aviv, Israel, 2013; pp 177-188.
-
(2013)
Proceedings of the 40th Annual International Symposium on Computer Architecture
, pp. 177-188
-
-
Muscat, R.A.1
Strauss, K.2
Ceze, L.3
Seelig, G.4
-
16
-
-
84885970867
-
DNA Walker Circuits: Computational Potential, Design, and Verification
-
Soloveichik, D. Yurke, B. Springer International Publishing: Berlin
-
Dannenberg, F.; Kwiatkowska, M.; Thachuk, C.; Turberfield, A. DNA Walker Circuits: Computational Potential, Design, and Verification. In DNA Computing and Molecular Programming; Soloveichik, D.; Yurke, B., Eds.; Springer International Publishing: Berlin, 2013; Vol. 8141, pp 31-45.
-
(2013)
DNA Computing and Molecular Programming
, vol.8141
, pp. 31-45
-
-
Dannenberg, F.1
Kwiatkowska, M.2
Thachuk, C.3
Turberfield, A.4
-
17
-
-
53049107187
-
Engineering the Spatial Organization of Metabolic Enzymes: Mimicking Natures Synergy
-
Conrado, R. J.; Varner, J. D.; DeLisa, M. P. Engineering the Spatial Organization of Metabolic Enzymes: Mimicking Natures Synergy Curr. Opin. Biotechnol. 2008, 19, 492-499
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 492-499
-
-
Conrado, R.J.1
Varner, J.D.2
Delisa, M.P.3
-
18
-
-
4544357020
-
DNA-Templated Organic Synthesis: Natures Strategy for Controlling Chemical Reactivity Applied to Synthetic Molecules
-
Li, X.; Liu, D. R. DNA-Templated Organic Synthesis: Natures Strategy for Controlling Chemical Reactivity Applied to Synthetic Molecules Angew. Chem., Int. Ed. 2004, 43, 4848-4870
-
(2004)
Angew. Chem., Int. Ed.
, vol.43
, pp. 4848-4870
-
-
Li, X.1
Liu, D.R.2
-
19
-
-
78149410682
-
Autonomous Multistep Organic Synthesis in a Single Isothermal Solution Mediated by a DNA Walker
-
He, Y.; Liu, D. R. Autonomous Multistep Organic Synthesis in a Single Isothermal Solution Mediated by a DNA Walker Nat. Nanotechnol. 2010, 5, 778-782
-
(2010)
Nat. Nanotechnol.
, vol.5
, pp. 778-782
-
-
He, Y.1
Liu, D.R.2
-
20
-
-
0036523464
-
DNA-Directed Assembly of Bienzymic Complexes from in Vivo Biotinylated NAD(P)H: FMN Oxidoreductase and Luciferase
-
Niemeyer, C. M.; Koehler, J.; Wuerdemann, C. DNA-Directed Assembly of Bienzymic Complexes from in Vivo Biotinylated NAD(P)H: FMN Oxidoreductase and Luciferase ChemBioChem 2002, 3, 242-245
-
(2002)
ChemBioChem
, vol.3
, pp. 242-245
-
-
Niemeyer, C.M.1
Koehler, J.2
Wuerdemann, C.3
-
21
-
-
64449084122
-
Enzyme Cascades Activated on Topologically Programmed DNA Scaffolds
-
Wilner, O. I.; Weizmann, Y.; Gill, R.; Lioubashevski, O.; Freeman, R.; Willner, I. Enzyme Cascades Activated on Topologically Programmed DNA Scaffolds Nat. Nanotechnol. 2009, 4, 249-254
-
(2009)
Nat. Nanotechnol.
, vol.4
, pp. 249-254
-
-
Wilner, O.I.1
Weizmann, Y.2
Gill, R.3
Lioubashevski, O.4
Freeman, R.5
Willner, I.6
-
22
-
-
54849426838
-
DNA-Directed Assembly of Artificial Multienzyme Complexes
-
Muller, J.; Niemeyer, C. DNA-Directed Assembly of Artificial Multienzyme Complexes Biochem. Biophys. Res. Commun. 2008, 377, 62-67
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.377
, pp. 62-67
-
-
Muller, J.1
Niemeyer, C.2
-
23
-
-
84859128218
-
Interenzyme Substrate Diffusion for an Enzyme Cascade Organized on Spatially Addressable DNA Nanostructures
-
Fu, J.; Liu, M.; Liu, Y.; Woodbury, N. W.; Yan, H. Interenzyme Substrate Diffusion for an Enzyme Cascade Organized on Spatially Addressable DNA Nanostructures J. Am. Chem. Soc. 2012, 134, 5516-5519
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 5516-5519
-
-
Fu, J.1
Liu, M.2
Liu, Y.3
Woodbury, N.W.4
Yan, H.5
-
24
-
-
84872588813
-
Single-Step Rapid Assembly of DNA Origami Nanostructures for Addressable Nanoscale Bioreactors
-
Fu, Y.; Zeng, D.; Chao, J.; Jin, Y.; Zhang, Z.; Liu, H.; Li, D.; Ma, H.; Huang, Q.; Gothelf, K. V.; Fan, C. Single-Step Rapid Assembly of DNA Origami Nanostructures for Addressable Nanoscale Bioreactors J. Am. Chem. Soc. 2013, 135, 696-702
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 696-702
-
-
Fu, Y.1
Zeng, D.2
Chao, J.3
Jin, Y.4
Zhang, Z.5
Liu, H.6
Li, D.7
Ma, H.8
Huang, Q.9
Gothelf, K.V.10
Fan, C.11
-
25
-
-
33645028600
-
Folding DNA to Create Nanoscale Shapes and Patterns
-
Rothemund, P. W. K. Folding DNA to Create Nanoscale Shapes and Patterns Nature 2006, 440, 297-302
-
(2006)
Nature
, vol.440
, pp. 297-302
-
-
Rothemund, P.W.K.1
-
26
-
-
20444460289
-
MicroRNA Expression Profiles Classify Human Cancers
-
Lu, J.; Getz, G.; Miska, E.; Alvarez-Saavedra, E.; Lamb, J.; Peck, D.; Sweet-Cordero, A.; Ebet, B.; Mak, R.; Ferrando, A.; Downing, J.; Jacks, T.; Horvitz, H.; Golub, T. MicroRNA Expression Profiles Classify Human Cancers Nature 2005, 435, 834-838
-
(2005)
Nature
, vol.435
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.3
Alvarez-Saavedra, E.4
Lamb, J.5
Peck, D.6
Sweet-Cordero, A.7
Ebet, B.8
Mak, R.9
Ferrando, A.10
Downing, J.11
Jacks, T.12
Horvitz, H.13
Golub, T.14
-
27
-
-
33144490646
-
A MicroRNA Expression Signature of Human Solid Tumors Defines Cancer Gene Targets
-
Volinia, S.; Calin, G.; Liu, C.; Ambs, S.; Cimmino, A.; Petrocca, F.; Visone, R.; Iorio, M.; Roldo, C.; Ferracin, M.; Prueitt, R.; Yanaihara, N.; Lanza, G.; Scarpa, A.; Vecchione, A.; Negrini, M.; Harris, C.; Croce, C. A MicroRNA Expression Signature of Human Solid Tumors Defines Cancer Gene Targets Proc. Natl. Acad. Sci. U. S. A. 2006, 103, 2257-2261
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 2257-2261
-
-
Volinia, S.1
Calin, G.2
Liu, C.3
Ambs, S.4
Cimmino, A.5
Petrocca, F.6
Visone, R.7
Iorio, M.8
Roldo, C.9
Ferracin, M.10
Prueitt, R.11
Yanaihara, N.12
Lanza, G.13
Scarpa, A.14
Vecchione, A.15
Negrini, M.16
Harris, C.17
Croce, C.18
-
28
-
-
18744407040
-
Stretching Single Stranded DNA, a Model Polyelectrolyte
-
Dessinges, M.-N.; Maier, B.; Zhang, Y.; Peliti, M.; Bensimon, D.; Croquette, V. Stretching Single Stranded DNA, a Model Polyelectrolyte Phys. Rev. Lett. 2002, 89, 248102
-
(2002)
Phys. Rev. Lett.
, vol.89
, pp. 248102
-
-
Dessinges, M.-N.1
Maier, B.2
Zhang, Y.3
Peliti, M.4
Bensimon, D.5
Croquette, V.6
-
29
-
-
1942423138
-
Probing Single-Stranded DNA Conformational Flexibility Using Fluorescence Spectroscopy
-
Murphy, M.; Rasnik, I.; Cheng, W.; Lohman, T.; Ha, T. Probing Single-Stranded DNA Conformational Flexibility Using Fluorescence Spectroscopy Biophys. J. 2004, 86, 2530-2537
-
(2004)
Biophys. J.
, vol.86
, pp. 2530-2537
-
-
Murphy, M.1
Rasnik, I.2
Cheng, W.3
Lohman, T.4
Ha, T.5
-
30
-
-
0020493719
-
The Anatomy of A-, B-, and Z-DNA
-
Dickerson, R. E.; Drew, H. R.; Conner, B. N.; Wing, R. M.; Fratini, A. V.; Kopka, M. L. The Anatomy of A-, B-, and Z-DNA Science 1982, 216, 475-485
-
(1982)
Science
, vol.216
, pp. 475-485
-
-
Dickerson, R.E.1
Drew, H.R.2
Conner, B.N.3
Wing, R.M.4
Fratini, A.V.5
Kopka, M.L.6
-
31
-
-
0014095619
-
The Structure of a DNA-RNA Hybrid
-
Milman, G.; Langridge, R.; Chamberlin, M. J. The Structure of a DNA-RNA Hybrid Proc. Natl. Acad. Sci. U. S. A. 1967, 57, 1804-1810
-
(1967)
Proc. Natl. Acad. Sci. U. S. A.
, vol.57
, pp. 1804-1810
-
-
Milman, G.1
Langridge, R.2
Chamberlin, M.J.3
-
32
-
-
0034708332
-
The Kinetics of Oligonucleotide Replacements
-
Reynaldo, L. P.; Vologodskii, A. V.; Neri, B. P.; Lyamichev, V. I. The Kinetics of Oligonucleotide Replacements J. Mol. Biol. 2000, 297, 511-520
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 511-520
-
-
Reynaldo, L.P.1
Vologodskii, A.V.2
Neri, B.P.3
Lyamichev, V.I.4
-
33
-
-
61749098353
-
A Yoctoliter-Scale DNA Reactor for Small-Molecule Evolution
-
Hansen, M. H.; Blakskjaer, P.; Petersen, L. K.; Hansen, T. H.; Hojfeldt, J. W.; Gothelf, K. V.; Hansen, N. J. V. A Yoctoliter-Scale DNA Reactor for Small-Molecule Evolution J. Am. Chem. Soc. 2009, 131, 1322-1327
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 1322-1327
-
-
Hansen, M.H.1
Blakskjaer, P.2
Petersen, L.K.3
Hansen, T.H.4
Hojfeldt, J.W.5
Gothelf, K.V.6
Hansen, N.J.V.7
-
34
-
-
0004232671
-
-
Princeton University Press: Princeton, NJ
-
Berg, H. C. Random Walks in Biology; Princeton University Press: Princeton, NJ, 1993.
-
(1993)
Random Walks in Biology
-
-
Berg, H.C.1
-
35
-
-
0015223587
-
Co-Operative Non-Enzymic Base Recognition. 3. Kinetics of the Helix-Coil Transition of the Oligoribouridylic-Oligoriboadenylic Acid System and of Oligoriboadenylic Acid Alone at Acidic pH
-
Pörschke, D.; Eigen, M. Co-Operative Non-Enzymic Base Recognition. 3. Kinetics of the Helix-Coil Transition of the Oligoribouridylic- Oligoriboadenylic Acid System and of Oligoriboadenylic Acid Alone at Acidic pH J. Mol. Biol. 1971, 62, 361-381
-
(1971)
J. Mol. Biol.
, vol.62
, pp. 361-381
-
-
Pörschke, D.1
Eigen, M.2
-
36
-
-
0015223584
-
Relaxation Kinetics of Dimer Formation by Self Complementary Oligonucleotides
-
Craig, M.; Crothers, D.; Doty, P. Relaxation Kinetics of Dimer Formation by Self Complementary Oligonucleotides J. Mol. Biol. 1971, 62, 383-401
-
(1971)
J. Mol. Biol.
, vol.62
, pp. 383-401
-
-
Craig, M.1
Crothers, D.2
Doty, P.3
-
37
-
-
22744435354
-
A Dnazyme That Walks Processively and Autonomously Along a One-Dimensional Track
-
Tian, Y.; He, Y.; Chen, Y.; Yin, P.; Mao, C. A Dnazyme That Walks Processively and Autonomously Along a One-Dimensional Track Angew. Chem., Int. Ed. 2005, 44, 4355-4358
-
(2005)
Angew. Chem., Int. Ed.
, vol.44
, pp. 4355-4358
-
-
Tian, Y.1
He, Y.2
Chen, Y.3
Yin, P.4
Mao, C.5
-
38
-
-
57149107978
-
Coordinated Chemomechanical Cycles: A Mechanism for Autonomous Molecular Motion
-
Green, S.; Bath, J.; Turberfield, A. Coordinated Chemomechanical Cycles: A Mechanism for Autonomous Molecular Motion Phys. Rev. Lett. 2008, 101, 238101
-
(2008)
Phys. Rev. Lett.
, vol.101
, pp. 238101
-
-
Green, S.1
Bath, J.2
Turberfield, A.3
-
39
-
-
64249145393
-
A Bipedal DNA Brownian Motor with Coordinated Legs
-
Omabegho, T.; Sha, R.; Seeman, N. C. A Bipedal DNA Brownian Motor with Coordinated Legs Science 2009, 324, 67-71
-
(2009)
Science
, vol.324
, pp. 67-71
-
-
Omabegho, T.1
Sha, R.2
Seeman, N.C.3
-
40
-
-
77952392836
-
Molecular Robots Guided by Prescriptive Landscapes
-
Lund, K.; Manzo, A. J.; Dabby, N.; Michelotti, N.; Johnson-Buck, A.; Nangreave, J.; Taylor, S.; Pei, R.; Stojanovic, M. N.; Walter, N. G.; Winfree, E.; Yan, H. Molecular Robots Guided by Prescriptive Landscapes Nature 2010, 465, 206-210
-
(2010)
Nature
, vol.465
, pp. 206-210
-
-
Lund, K.1
Manzo, A.J.2
Dabby, N.3
Michelotti, N.4
Johnson-Buck, A.5
Nangreave, J.6
Taylor, S.7
Pei, R.8
Stojanovic, M.N.9
Walter, N.G.10
Winfree, E.11
Yan, H.12
-
41
-
-
79952446957
-
Direct Observation of Stepwise Movement of a Synthetic Molecular Transporter
-
Wickham, S. F. J.; Endo, M.; Katsuda, Y.; Hidaka, K.; Bath, J.; Sugiyama, H.; Turberfield, A. J. Direct Observation of Stepwise Movement of a Synthetic Molecular Transporter Nat. Nanotechnol. 2011, 6, 166-169
-
(2011)
Nat. Nanotechnol.
, vol.6
, pp. 166-169
-
-
Wickham, S.F.J.1
Endo, M.2
Katsuda, Y.3
Hidaka, K.4
Bath, J.5
Sugiyama, H.6
Turberfield, A.J.7
-
42
-
-
69849088255
-
Rapid Prototyping of 3D DNA-Origami Shapes with Cadnano
-
Douglas, S. M.; Marblestone, A. H.; Teerapittayanon, S.; Vazquez, A.; Church, G. M.; Shih, W. M. Rapid Prototyping of 3D DNA-Origami Shapes with Cadnano Nucleic Acid Res. 2009, 37, 5001-5006
-
(2009)
Nucleic Acid Res.
, vol.37
, pp. 5001-5006
-
-
Douglas, S.M.1
Marblestone, A.H.2
Teerapittayanon, S.3
Vazquez, A.4
Church, G.M.5
Shih, W.M.6
-
43
-
-
66249137759
-
Self-Assembly of DNA into Nanoscale Three-Dimensional Shapes
-
Douglas, S. M.; Dietz, H.; Liedl, T.; Högberg, B.; Graf, F.; Shih, W. M. Self-Assembly of DNA into Nanoscale Three-Dimensional Shapes Nature 2009, 459, 414-418
-
(2009)
Nature
, vol.459
, pp. 414-418
-
-
Douglas, S.M.1
Dietz, H.2
Liedl, T.3
Högberg, B.4
Graf, F.5
Shih, W.M.6
-
44
-
-
34249856814
-
DNA-Nanotube-Induced Alignment of Membrane Proteins for NMR Structure Determination
-
Douglas, S. M.; Chou, J. J.; Shih, W. M. DNA-Nanotube-Induced Alignment of Membrane Proteins for NMR Structure Determination Proc. Natl. Acad. Sci. U. S. A. 2007, 104, 6644-6648
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 6644-6648
-
-
Douglas, S.M.1
Chou, J.J.2
Shih, W.M.3
|