Aptamer-based determination of ATP by using a functionalized impedimetric nanosensor and mediation by a triangular junction transducer

Microchimica Acta

Volumn 184, Issue 11, 2017, Pages 4425-4431

  Gopinath, Subash C B ^a   Perumal, Veeradasan ^b   Balakrishnan, S R ^c   Md Arshad, M K ^a   Lakshmipriya, Thangavel ^a   Haarindraprasad, R ^d   Hashim, Uda ^a  

^a UNIVERSITY MALAYSIA PERLIS   (Malaysia)

^b DEPARTMENT OF CHEMICAL ENGINEERING   (Malaysia)

^c UNIVERSITI SAINS ISLAM MALAYSIA   (Malaysia)

^d AIMST UNIVERSITY   (Malaysia)

Author keywords

Aptasensor; ATP aptamer; Biotinylation; Human urine; Micro device

Indexed keywords

EID: 85028824303     PISSN: 00263672     EISSN: 14365073     Source Type: Journal    
DOI: 10.1007/s00604-017-2485-8     Document Type: Article

References (36)

1. Park JH, Byun JY, Shim WB et al (2015) High-sensitivity detection of ATP using a localized surface plasmon resonance (LSPR) sensor and split aptamers. Biosens Bioelectron 73:26–31. https://doi.org/10.1016/j.bios.2015.05.043
2. Gill K, Horsley H, Kupelian AS et al (2015) Urinary ATP as an indicator of infection and inflammation of the urinary tract in patients with lower urinary tract symptoms. BMC Urol 15:7. https://doi.org/10.1186/s12894-015-0001-1
3. Nieminen AI, Eskelinen VM, Haikala HM et al (2013) Myc-induced AMPK-phospho p53 pathway activates Bak to sensitize mitochondrial apoptosis. Proc Natl Acad Sci U S A 110:E1839–E1848. https://doi.org/10.1073/pnas.1208530110
4. Matschinsky FM, Pagliara AS, Stillings SN, Hover BA (1976) Glucose and ATP levels in pancreatic islet tissue of normal and diabetic rats. J Clin Invest 58:1193–1200. https://doi.org/10.1172/JCI108572
5. Poulis JA, de Pijper M, Mossel DAA, Dekkers PPA (1993) Assessment of cleaning and disinfection in the food industry with the rapid ATP-bioluminescence technique combined with the tissue fluid contamination test and a conventional microbiological method. Int J Food Microbiol 20:109–116. https://doi.org/10.1016/0168-1605(93)90098-2
6. Silva-Ramos M, Silva I, Oliveira O et al (2013) Urinary ATP may be a dynamic biomarker of detrusor Overactivity in women with overactive bladder syndrome. PLoS One. https://doi.org/10.1371/journal.pone.0064696
7. Gopinath SCB (2007) Antiviral aptamers. Arch Virol 152:2137–2157. https://doi.org/10.1007/s00705-007-1014-1
8. Gopinath SCB, Kumar PKR (2013) Acta Biomaterialia aptamers that bind to the hemagglutinin of the recent pandemic influenza virus H1N1 and efficiently inhibit agglutination. Acta Biomater 9:8932–8941. https://doi.org/10.1016/j.actbio.2013.06.016
9. Gopinath SCB, Kumar PKR (2013) Aptamers that bind to the hemagglutinin of the recent pandemic influenza virus H1N1 and efficiently inhibit agglutination. Acta Biomater 9:8932–8941. https://doi.org/10.1016/j.actbio.2013.06.016
10. Famulok M, Hartig S (2007) Functional aptamers and Aptazymes in biotechnology, diagnostics, and therapy. Chem Rev 107:3715–3743
11. Lakshmipriya T, Fujimaki M, Gopinath SCB et al (2013) A high-performance waveguide-mode biosensor for detection of factor IX using PEG-based blocking agents to suppress non-specific binding and improve sensitivity. Analyst 138:2863–2870. https://doi.org/10.1039/c3an00298e
12. Ahn D-G, Jeon I-J, Kim JD et al (2009) RNA aptamer-based sensitive detection of SARS coronavirus nucleocapsid protein. Analyst 134:1896–1901. https://doi.org/10.1039/b906788d
13. Kim D, Jeong YY, Jon S (2010) A drug-loaded aptamer-gold nanoparticle bioconjugate for combined CT imaging and therapy of prostate cancer. ACS Nano 4:3689–3696. https://doi.org/10.1021/nn901877h
14. Gopinath SCB, Misono TS, Kumar PKR (2008) Prospects of ligand-induced aptamers. Crit Rev Anal Chem 38:34–47. https://doi.org/10.1080/10408340701804558
15. Citartan M, Gopinath SCB, Tominaga J et al (2012) Assays for aptamer-based platforms. Biosens Bioelectron 34:1–11. https://doi.org/10.1016/j.bios.2012.01.002
16. Lakshmipriya T, Fujimaki M, Gopinath SCB, Awazu K (2013) Generation of anti-influenza aptamers using the systematic evolution of ligands by exponential enrichment for sensing applications. Langmuir 29:15107–15115
17. Li L, Hou J, Liu X et al (2014) Nucleolin-targeting liposomes guided by aptamer AS1411 for the delivery of siRNA for the treatment of malignant melanomas. Biomaterials 35:3840–3850. https://doi.org/10.1016/j.biomaterials.2014.01.019
18. Gopinath SCB, Lakshmipriya T, Chen Y et al (2016) Aptamer-based “point-of-care testing.”. Biotechnol Adv 34:198–208. https://doi.org/10.1016/j.biotechadv.2016.02.003
19. Huizenga DE, Szostak JW (1995) A DNA aptamer that binds adenosine and ATP. Biochemistry 34:656–665. https://doi.org/10.1021/bi00002a033
20. Liu F, Zhang J, Chen R et al (2011) Highly effective colorimetric and visual detection of ATP by a DNAzyme À aptamer sensor. Chem Biodivers 8:311–316
21. Urata H, Nomura K, Ichi WS, Akagi M (2007) Fluorescent-labeled single-strand ATP aptamer DNA: chemo- and enantio-selectivity in sensing adenosine. Biochem Biophys Res Commun 360:459–463. https://doi.org/10.1016/j.bbrc.2007.06.075
22. Xia T, Yuan J, Fang X (2013) Conformational dynamics of an ATP-binding DNA aptamer: a single-molecule study. J Phys Chem B 117:14994–15003. https://doi.org/10.1021/jp4099667
23. Shu D, Guo P (2003) A viral RNA that binds ATP and contains a motif similar to an ATP-binding aptamer from SELEX. J Biol Chem 278:7119–7125. https://doi.org/10.1074/jbc.M209895200
24. Huang Z, Szostak JW (2003) Evolution of aptamers with a new specificity and new secondary structures from an ATP aptamer. RNA 9:1456–1463. https://doi.org/10.1261/rna.5990203
25. Zuo X, Song S, Zhang J et al (2007) A target-responsive electrochemical aptamer switch (TREAS) for reagentless detection of nanomolar ATP. J Am Chem Soc 129:1042–1043. https://doi.org/10.1021/ja067024b
26. Zeng X, Zhang X, Yang W et al (2012) Fluorescence detection of adenosine triphosphate through an aptamer-molecular beacon multiple probe. Anal Biochem 424:8–11. https://doi.org/10.1016/j.ab.2012.01.021
27. Kirby R, Cho EJ, Gehrke B et al (2004) Aptamer-based sensor arrays for the detection and quantitation of proteins. Anal Chem 76:4066–4075. https://doi.org/10.1021/ac049858n
28. Chen F, Cai C, Chen X, Chen C (2016) “click on the bidirectional switch”: the aptasensor for simultaneous detection of lysozyme and ATP with high sensitivity and high selectivity. Nat Publ Gr:1–7. https://doi.org/10.1038/srep18814
29. Balakrishnan SR, Hashim U, Gopinath SCB et al (2016) Polysilicon Nanogap lab-on-Chip facilitates multiplex analyses with single Analyte. Biosens bioelectron 84:44–52. https://doi.org/10.1016/j.Bios.2015.10.075
30. Lu Y, Li X, Zhang L, Yu P, Su L, Mao L (2008) Aptamer-based electrochemical sensors with aptamer-complementary DNA oligonucleotides as probe. Anal Chem 80:1883–1890
31. Lakshmipriya T, Gopinath SCB, Tang T-H (2016) Biotin-streptavidin competition mediates sensitive detection of biomolecules in enzyme linked immunosorbent assay. PLoS One 11:e0151153. https://doi.org/10.1371/journal.pone.0151153
32. Ning Y, Wei K, Cheng L, Hu J, Xiang Q (2017) Fluorometric aptamer based determination of adenosine triphosphate based on deoxyribonuclease I-aided target recycling and signal amplification using graphene oxide as a quencher. Microchim Acta 184:1847–1854
33. Tang D, Hou L (2016) Aptasensor for ATP based on analyte-induced dissociation of ferrocene-aptamer conjugates from manganese dioxide nanosheets on a screen-printed carbon electrode. Microchim Acta 183(10):2705–2711
34. He Y, Liao L, Xu C, Wu R, Li S, Yang Y (2015) Determination of ATP by resonance light scattering using a binuclear uranyl complex and aptamer modified gold nanoparticles as optical probes. Microchim Acta 182:419–426
35. Wang Y-M, Liu J-W, Duan L-Y, Liu S-J, Jiang J-H (2017) Aptamer-based fluorometric determination of ATP by using target-cycling strand displacement amplification and copper nanoclusters. Microchim. Acta (In press)
36. Tedsanaa W, Tuntulanib T, Ngeontae W (2013) A highly selective turn-on ATP fluorescence sensor based on unmodified cysteamine capped CdS quantum dots. Anal. Chim. Acta 783:65–73