Aptamers that bind to the hemagglutinin of the recent pandemic influenza virus H1N1 and efficiently inhibit agglutination

Acta Biomaterialia

Volumn 9, Issue 11, 2013, Pages 8932-8941

  Gopinath, Subash C B ^a   Kumar, Penmetcha K R ^a  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

Agglutination; Aptamer; Hemagglutinin; Influenza; Pandemic

Indexed keywords

BACTERIA; BLOOD; CELL MEMBRANES; POLYSACCHARIDES; VIRUSES;

APTAMERS; GLYCANS; HEMAGGLUTININ; HIGH AFFINITY; INFLUENZA; INFLUENZA A VIRUS; INFLUENZA VIRUS; MEMBRANE FUSION; PANDEMIC; PANDEMIC INFLUENZA;

ANTIGEN-ANTIBODY REACTIONS;

APTAMER; FLUOROPYRIMIDINE; INFLUENZA VIRUS HEMAGGLUTININ; PYRIMIDINE; RIBONUCLEASE; VIRUS RNA;

AGGLUTINATION TEST; ANIMAL CELL; ANTIGEN ANTIBODY REACTION; ARTICLE; BACULOVIRUS; BINDING AFFINITY; BINDING KINETICS; CHEMICAL MODIFICATION; CONTROLLED STUDY; DISSOCIATION CONSTANT; DNA LIBRARY; ERYTHROCYTE; IN VITRO SELECTION; IN VITRO STUDY; INFLUENZA A (H1N1); INFLUENZA VIRUS A H1N1; INHIBITION KINETICS; INTERACTIONS WITH RNA; NONHUMAN; PANDEMIC INFLUENZA; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; PROTEIN TARGETING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA BINDING;

INFLUENZA A VIRUS; ORTHOMYXOVIRIDAE;

AGGLUTINATION; APTAMER; HEMAGGLUTININ; INFLUENZA; PANDEMIC;

AGGLUTINATION; AGGLUTINATION TESTS; ANIMALS; APTAMERS, NUCLEOTIDE; BASE SEQUENCE; CHICKENS; ENDORIBONUCLEASES; ERYTHROCYTES; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HOST SPECIFICITY; HUMANS; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA, HUMAN; KINETICS; LIGANDS; MOLECULAR SEQUENCE DATA; N-ACETYLNEURAMINIC ACID; ORTHOMYXOVIRIDAE INFECTIONS; PANDEMICS; POLYSACCHARIDES; PROTEIN BINDING; RNA STABILITY;

EID: 84885067046     PISSN: 17427061     EISSN: 18787568     Source Type: Journal    
DOI: 10.1016/j.actbio.2013.06.016     Document Type: Article

References (39)

1. WHO. A version of the system of nomenclature for influenza viruses. WHO Memorandum Bull 1980;58:585-91.
2. R.J. Garten, C.T. Davis, C.A. Russell, B. Shu, S. Lindstrom, and A. Balish Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans Science 325 2009 197 201
3. C. Scholtissek, W. Rohde, V. Von Hoyningen, and R. Rott On the origin of the human influenza virus subtypes H2N2 and H3N2 Virology 87 1978 13 20 (Pubitemid 8359271)
4. Y. Kawaoka, W.J. Bean, and R.G. Webster Evolution of the haemagglutinin of equine H3 influenza viruses Virology 169 1989 283 292 (Pubitemid 19105913)
5. J.J. Skehel, and D.C. Wiley Receptor binding and membrane fusion in virus entry: the influenza haemagglutinin Annu Rev Biochem 69 2000 531 569
6. R.J. Russell, D.J. Stevens, L.F. Haire, S.J. Gamblin, and J.J. Skehel Avian and human receptor binding by haemagglutinins of influenza A viruses Glycoconj J 23 2006 85 92
7. Centers for Disease Control and Prevention Swine influenza A (H1N1) infection in two children - Southern California, March-April 2009 MMWR Morb Mortal Wkly Rep 58 2009 400 402
8. A.J. Gibbs, J.S. Armstrong, and J.C. Downie From where did the 2009 swine-origin influenza A virus (H1N1) emerge? Virol J 6 2009 207
9. G.J. Smith, D. Vijaykrishna, J. Bahl, S.J. Lycett, M. Worobey, and O.G. Pybus Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic Nature 459 2009 1122 1125
10. Trifonov V, Khiabanian H, Greenbaum B, Rabadan R. The origin of the recent swine influenza A (H1N1) virus infecting humans. Euro Surveill 2009;14:pii: 19193.
11. A.D. Ellington, and J.W. Szostak In vitro selection of RNA molecules that bind specific ligands Nature 30 1990 818 822
12. C. Tuerk, and L. Gold Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase Science 249 1990 505 510
13. C. Tuerk, S. MacDougal, and L. Gold RNA pseudoknots that inhibit human immunodeficiency virus type 1 reverse transcriptase Proc Natl Acad Sci USA 89 1992 6988 6992
14. L. Giver, D. Bartel, M. Zapp, A. Pawul, M. Green, and A.D. Ellington Selective optimization of the Rev-binding element of HIV-1 Nucleic Acids Res 21 1993 5509 5516 (Pubitemid 23348621)
15. S. Baskerville, M. Zapp, and A.D. Ellington High-resolution mapping of the human T-cell leukemia virus type 1 Rex-binding element by in vitro selection J Virol 69 1995 7559 7569
16. P.K.R. Kumar, K. Machida, P.T. Urvil, P.N. Kakiuchi, D. Vishnuvardhan, and K. Shimotohno Isolation of RNA aptamers specific to the NS3 protein of hepatitis C virus from a pool of completely random RNA Virology 237 1997 270 282 (Pubitemid 27489266)
17. R. Yamamoto, M. Katahira, S. Nishikawa, T. Baba, K. Taira, and P.K.R. Kumar A novel RNA motif that binds efficiently and specifically to the Ttat protein of HIV and inhibits the trans-activation by Tat of transcription in vitro and in vivo Genes Cells 5 2000 371 388 (Pubitemid 30409093)
18. S.H. Jeon, B. Kayhan, T. Ben-Yedidia, and R. Arnon A DNA aptamer prevents influenza infection by blocking the receptor binding region of the viral hemagglutinin J Biol Chem 279 2004 48410 48419 (Pubitemid 39540998)
19. S.C.B. Gopinath, K. Hayashi, and P.K.R. Kumar Aptamer that binds to the gD protein of herpes simplex virus-1 and efficiently inhibits viral entry J Virol 86 2012 6732 6744
20. R.D. Jenison, S.C. Gill, A. Pardi, and B. Polisky High-resolution molecular discrimination by RNA Science 263 1994 1425 1429 (Pubitemid 24137828)
21. S.C.B. Gopinath, T. Misono, K. Kawasaki, T. Mizuno, M. Imai, and T. Odagiri An RNA aptamer that distinguishes between closely related human influenza viruses and inhibits hemagglutinin-mediated membrane fusion J Gen Virol 87 2006 479 487
22. S.C.B. Gopinath, Y. Sakamaki, K. Kawasaki, and P.K.R. Kumar An efficient RNA aptamer against human influenza B virus hemagglutinin J Biochem 139 2006 837 846 (Pubitemid 44014577)
23. R. Karlsson, P.S. Katsamba, H. Nordin, E. Pol, and D.G. Myszka Analyzing a kinetic titration series using affinity biosensors Anal Biochem 349 2006 136 147 (Pubitemid 43129567)
24. H.H. Trutnau New multi-step kinetics using common affinity biosensors saves time and sample at full access to kinetics and concentration J Biotechnol 124 2006 191 195
25. C.P. Rusconi, E. Scardino, J. Layzer, G.A. Pitoc, T.L. Ortel, and D. Monroe RNA aptamers as reversible antagonists of coagulation factor IXa Nature 419 2002 90 94 (Pubitemid 34987876)
26. M.L. Killian Hemagglutination assay for the avian influenza virus Methods Mol Biol 436 2008 47 52
27. K. Kuroda, C. Hauser, R. Rott, H. Klenk, and W. Doerfler Expression of the influenza virus haemagglutinin in insect cells by a baculovirus vector EMBO J 5 1986 1359 1365
28. H. Wu, K. Williams, S.R. Singh, K. Scissum-Gunn, N.K. Singh, and D. Teresa Integrity of a recombinant hemagglutinin protein of an avian influenza virus Biotechnol Lett 31 2009 1511 1517
29. S. Khurana, S. Verma, N. Verma, C.J. Crevar, D.M. Carter, and J. Manischewitz Properly folded bacterially expressed H1N1 hemagglutinin globular head and ectodomain vaccines protect ferrets against H1N1 pandemic influenza virus PLoS ONE 5 2010 e11548
30. A. Chandrasekaran, A. Srinivasan, R. Raman, K. Viswanathan, S. Raguram, and T.M. Tumpey Glycan topology determines human adaptation of avian H5N1 virus hemagglutinin Nat Biotechnol 26 2008 107 113
31. R.A. Childs, A.S. Palms, S. Wharton, T. Matrosvich, Y. Liu, and W. Chai Receptor-binding specificity of pandemic influenza A (H1N1) 2009 virus determined by carbohydrate microarray Nat Biotechnol 27 2009 797 799
32. M. Wongphatcharachi, P. Wang, S. Enomoto, R.J. Webby, M.R. Gramer, and A. Amonsin Neutralizing DNA aptamers against swine influenza H3N2 viruses J Clin Microbiol 51 2013 46 54
33. M. Imai, T. Watanabe, M. Hatta, S.C. Das, M. Ozawa, and K. Shinya Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets Nature 486 2012 420 428
34. Y. Itoh, K. Shinya, M. Kiso, T. Watanabe, Y. Sakoda, and M. Hatta In vitro and in vivo characterization of new swine-origin H1N1 influenza viruses Nature 460 2009 1021 1025
35. J. Shen, J. Ma, Q. Wang, and D.P. Martin Evolutionary trends of A(H1N1) influenza virus hemagglutinin since 1918 PLoS ONE 4 2009 e7789
36. R. Xu, R. McBride, C.M. Nycholat, J.C. Paulson, and I.A. Wilson Structural characterization of the hemagglutinin receptor from the 2009 H1N1 influenza pandemic J Virol 86 2012 980 990
37. Y. Kamiyama, K. Adachi, E. Handharyani, R.D. Soejoedono, T. Kusano, and M. Inai Protection from avian influenza H5N1 virus infection with antibody-impregnated filters Virol J 8 2011 54 56
38. M. Tsukamoto, S. Hiroi, K. Adachi, H. Kato, M. Inai, and I. Konishi Antibodies against swine influenza virus neutralize the pandemic influenza virus A/H1N1 Mol Med Rep 4 2011 209 214
39. D. Buller Flu surveillance lacking Nature 483 2012 520 522