Development of chemical and EST-SSR markers for Ocimum genus

Industrial Crops and Products

Volumn 63, Issue , 2015, Pages 65-70

  Mahajan, Vidushi ^a,b   Rather, Irshad Ahmad ^a   Awasthi, Praveen ^a   Anand, Rajneesh ^a   Gairola, Sumeet ^a,b   Meena, Siya Ram ^a   Bedi, Yashbir S ^a,b   Gandhi, Sumit G ^a,b  

^a CSIR INDIAN INSTITUTE OF INTEGRATIVE MEDICINE   (India)

^b ACADEMY OF SCIENTIFIC AND INNOVATIVE RESEARCH ACSIR   (India)

Author keywords

Essential oil; Genetic diversity; Hyptis suaveolens; Microsatellite

Indexed keywords

BIODIVERSITY; BIOMARKERS; DNA SEQUENCES; GAS CHROMATOGRAPHY; GAS OILS;

AROMATIC PLANTS; CHEMICAL VARIABILITY; GENETIC DIVERSITY; HYPTIS SUAVEOLENS; MICROSATELLITE; MICROSATELLITE MARKERS; NUMBER OF SPECIES; PHARMACEUTICAL INDUSTRY;

ESSENTIAL OILS;

BIOMARKER; CHEMICAL COMPOSITION; DICOTYLEDON; ESSENTIAL OIL; GENETIC MARKER; GENETIC VARIATION; MEDICINAL PLANT; MEDICINE; PHARMACEUTICAL INDUSTRY; TAXONOMY;

HYPTIS SUAVEOLENS; LAMIACEAE; OCIMUM;

EID: 85027919456     PISSN: 09266690     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.indcrop.2014.10.052     Document Type: Article

References (36)

1. Awasthi P., Ahmad I., Gandhi S.G., Bedi Y.S. Development of chloroplast microsatellite markers for phylogenetic analysis in Brassicaceae. Acta Biol. Hung. 2012, 63:463-473.
2. Backiyarani S., Uma S., Varatharj P., Saraswathi M.S. Mining of EST-SSR markers of Musa and their transferability studies among the members of order the Zingiberales. Appl. Biochem. Biotechnol. 2013, 169:228-238.
3. Carović-Stanko K., Liber Z., Besendorfer V., Javornik B., Bohanec B., Kolak I., Satovic Z. Genetic relations among basil taxa (Ocimum L.) based on molecular markers, nuclear DNA content, and chromosome number. Plant Syst. Evol. 2009, 285:13-22.
4. Chen C., Zhou P., Choi Y.A., Huang S., Gmitter F.G. Mining and characterizing microsatellites from citrus ESTs. Theor. Appl. Genet. 2006, 112:1248-1257.
5. Conesa A., Götz S., García-Gómez J.M., Terol J., Talón M., Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676.
6. Da Costa A.S., Arrigoni-Blank M.de F., da Silva M.A.A.P., Alves M.F., Santos D.de A., Alves P.B., Blank A.F. The impact of hybridization on the volatile and sensorial profile of Ocimum basilicum L. ScientificWorldJournal 2014, 2014:824594.
7. Darrah H.H. The Cultivated Basils 1980, 40. Buckeye Print. Co., Independence, MO.
8. Decroocq V., Favé M.G., Hagen L., Bordenave L., Decroocq S. Development and transferability of apricot and grape EST microsatellite markers across taxa. Theor. Appl. Genet. 2003, 106:912-922.
9. Dice L.R. Measures of the amount of ecologic association between species. Ecology 1945, 26:297-302.
10. Doyle J.J., Doyle J.L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 1987, 19:11-15.
11. Duman A.D., Telci I., Dayisoylu K.S., Digrak M., Demirtas I., Alma M.H. Evaluation of bioactivity of linalool-rich essential oils from Ocimum basilucum and Coriandrum sativum varieties. Nat. Prod. Commun. 2010, 5:969-974.
12. Gandhi S.G., Awasthi P., Bedi Y.S. Analysis of SSR dynamics in chloroplast genomes of Brassicaceae family. Bioinformation 2010, 5:16-20.
13. Gupta S., Shukla R., Roy S., Sen N., Sharma A. In silico SSR and FDM analysis through EST sequences in Ocimum Basilicum. Plant Omics J. 2010, 3:121-128.
14. Hintze J. NCSS 2007, LLC, http://www.ncss.com (accessed 30.04.14).
15. Hussain A.I., Anwar F., Hussain Sherazi S.T., Przybylski R. Chemical composition, antioxidant and antimicrobial activities of basil (Ocimum basilicum) essential oils depends on seasonal variations. Food Chem. 2008, 108:986-995.
16. Interaminense L.F.L., Jucá D.M., Magalhães P.J.C., Leal-Cardoso J.H., Duarte G.P., Lahlou S. Pharmacological evidence of calcium-channel blockade by essential oil of Ocimum gratissimum and its main constituent, eugenol, in isolated aortic rings from DOCA-salt hypertensive rats. Fundam. Clin. Pharmacol. 2007, 21:497-506.
17. Jadhav B.K., Khandelwal K.R., Ketkar A.R., Pisal S.S. Formulation and evaluation of mucoadhesive tablets containing eugenol for the treatment of periodontal diseases. Drug Dev. Ind. Pharm. 2004, 30:195-203.
18. Janmoni K., Mohamed L.K. Commercial potentialities of essential oil of Ocimum members growing in North East India. Int. J. Pharm. Life Sci. 2013, 4:2559-2567.
19. Kalia R.K., Rai M.K., Kalia S., Singh R., Dhawan A.K. Microsatellite markers: an overview of the recent progress in plants. Euphytica 2010, 177:309-334.
20. Kantety R.V., La Rota M., Matthews D.E., Sorrells M.E. Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol. Biol. 2002, 48:501-510.
21. Khosla M.K. Study of inter-relationship, phylogeny and evolutionary tendencies in genus Ocimum. Indian J. Genet. Plant Breed. 1995, 55:71-83.
22. Labra M., Miele M., Ledda B., Grassi F., Mazzei M., Sala F. Morphological characterization, essential oil composition and DNA genotyping of Ocimum basilicum L. cultivars. Plant Sci. 2004, 167:725-731.
23. Leclercq S., Rivals E., Jarne P. DNA slippage occurs at microsatellite loci without minimal threshold length in humans: a comparative genomic approach. Genome Biol. Evol. 2010, 2:325-335.
24. Moccia M.D., Oger-Desfeux C., Marais G.A., Widmer A. A White Campion (Silene latifolia) floral expressed sequence tag (EST) library: annotation, EST-SSR characterization, transferability, and utility for comparative mapping. BMC Genomics 2009, 10:243.
25. Muthuraman A., Diwan V., Jaggi A.S., Singh N., Singh D. Ameliorative effects of Ocimum sanctum in sciatic nerve transection-induced neuropathy in rats. J. Ethnopharmacol. 2008, 120:56-62.
26. Pashley C.H., Ellis J.R., McCauley D.E., Burke J.M. EST databases as a source for molecular markers: lessons from Helianthus. J. Hered. 2006, 97:381-388.
27. Pattanayak P., Behera P., Das D., Panda S.K. Ocimum sanctum Linn., a reservoir plant for therapeutic applications: an overview. Pharmacogn. Rev. 2010, 4:95-105.
28. Pessoa L., Morais S., Bevilaqua C., Luciano J. Anthelmintic activity of essential oil of Ocimum gratissimum Linn. and eugenol against Haemonchus contortus. Vet. Parasitol. 2002, 109:59-63.
29. Pushpagandan P., Bradu L. Basil. Medicinal and Aromatic Plants 1995, 627-658. Malhotra publishing House, India. K. Chadha, R. Gupta (Eds.).
30. Radulović N.S., Blagojević P.D., Miltojević A.B. α-Linalool - a marker compound of forged/synthetic sweet basil (Ocimum basilicum L.) essential oils. J. Sci. Food Agric. 2013, 93:3292-3303.
31. Scott K.D., Eggler P., Seaton G., Rossetto M., Ablett E.M., Lee L.S., Henry R.J. Analysis of SSRs derived from grape ESTs. Theor. Appl. Genet. 2000, 100:723-726.
32. Semagn K., Bjørnstad Å., Ndjiondjop M. An overview of molecular marker methods for plants. Afr. J. Biotechnol. 2006, 5:2540-2568.
33. Sena Filho J.G., Xavier H.S., Barbosa Filho J.M., Duringer J.M. A chemical marker proposal for the Lantana genus: composition of the essential oils from the leaves of Lantana radula and L. canescens. Nat. Prod. Commun. 2010, 5:635-640.
34. Shirasawa K., Ishii K., Kim C., Ban T., Suzuki M., Ito T., Muranaka T., Kobayashi M., Nagata N., Isobe S., Tabata S. Development of Capsicum EST-SSR markers for species identification and in silico mapping onto the tomato genome sequence. Mol. Breed. 2013, 31:101-110.
35. Sobti S.N., Pushpangadan P., Atal C.K. Clocimum: a new hybrid strain of Ocimum gratissimum as a potential source of clove type oil, rich in eugenol. Cultivation and Utilization of Aromatic Plants 1982, 480. Regional Research Laboratory, Council of Scientific & Industrial Research. C.K. Kapur, B.M. Atal (Eds.).
36. Tang S., Okashah R.A., Cordonnier-Pratt M.-M., Pratt L.H., Ed Johnson V., Taylor C.A., Arnold M.L., Knapp S.J. EST and EST-SSR marker resources for Iris. BMC Plant Biol. 2009, 9:72.