-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
23044455690
-
Cytokinin oxidase regulates rice grain production
-
Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, Angeles ER, Qian Q, Kitano H, Matsuoka M (2005) Cytokinin oxidase regulates rice grain production. Science 309: 741-745.
-
(2005)
Science
, vol.309
, pp. 741-745
-
-
Ashikari, M.1
Sakakibara, H.2
Lin, S.3
Yamamoto, T.4
Takashi, T.5
Nishimura, A.6
Angeles, E.R.7
Qian, Q.8
Kitano, H.9
Matsuoka, M.10
-
3
-
-
69149084832
-
A DNA barcode for land plants
-
CBLO Plant Working Group
-
CBLO Plant Working Group (2009) A DNA barcode for land plants. Proc Natl Acad Sci USA 106: 12794-12797.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 12794-12797
-
-
-
5
-
-
0342678032
-
-
IPGRI, AVRDC and CATIE, International Plant Genetic Resources Institute, Rome
-
IPGRI, AVRDC and CATIE (1995) Descriptors for Capsicum (Capsicum spp.). International Plant Genetic Resources Institute, Rome.
-
(1995)
Descriptors for Capsicum (Capsicum spp.)
-
-
-
6
-
-
78650409007
-
DNA barcoding in a crop genebank: the Capsicum annuum species complex
-
Jarret RL (2008) DNA barcoding in a crop genebank: the Capsicum annuum species complex. Opin Biol J 1: 35-42.
-
(2008)
Opin Biol J
, vol.1
, pp. 35-42
-
-
Jarret, R.L.1
-
7
-
-
78650382446
-
Identification of Capsicum species using SNP markers based on high resolution melting analysis
-
Jeong HJ, Jo YD, Park SW, Kang BC (2010) Identification of Capsicum species using SNP markers based on high resolution melting analysis. Genome 53: 1029-1040.
-
(2010)
Genome
, vol.53
, pp. 1029-1040
-
-
Jeong, H.J.1
Jo, Y.D.2
Park, S.W.3
Kang, B.C.4
-
8
-
-
77955174748
-
Discovery of single nucleotide polymorphism in Capsicum and SNP markers for cultivar identification
-
Jung J, Park SW, Liu WY, Kang BC (2010) Discovery of single nucleotide polymorphism in Capsicum and SNP markers for cultivar identification. Euphytica 175: 91-107.
-
(2010)
Euphytica
, vol.175
, pp. 91-107
-
-
Jung, J.1
Park, S.W.2
Liu, W.Y.3
Kang, B.C.4
-
9
-
-
78650518016
-
Microsatellite markers: an overview of the recent progress in plants
-
Kalia RK, Rai MK, Kalia S, Singh R, Dhawan AK (2011) Microsatellite markers: an overview of the recent progress in plants. Euphytica 117: 309-334.
-
(2011)
Euphytica
, vol.117
, pp. 309-334
-
-
Kalia, R.K.1
Rai, M.K.2
Kalia, S.3
Singh, R.4
Dhawan, A.K.5
-
10
-
-
84861728275
-
Large-scale development of expressed sequence tag-derived simple sequence repeat markers and diversity analysis in Arachis spp
-
Koilkonda P, Sato S, Tabata S, Shirasawa K, Hirakawa H, Sakai H, Sasamoto S, Watanabe A, Wada T, Kishida Y, Tsuruoka H, Fujishiro T, Yamada M, Kohara M, Suzuki S, Hasegawa M, Kiyoshima H, Isobe S (2012) Large-scale development of expressed sequence tag-derived simple sequence repeat markers and diversity analysis in Arachis spp. Mol Breed 30: 125-138.
-
(2012)
Mol Breed
, vol.30
, pp. 125-138
-
-
Koilkonda, P.1
Sato, S.2
Tabata, S.3
Shirasawa, K.4
Hirakawa, H.5
Sakai, H.6
Sasamoto, S.7
Watanabe, A.8
Wada, T.9
Kishida, Y.10
Tsuruoka, H.11
Fujishiro, T.12
Yamada, M.13
Kohara, M.14
Suzuki, S.15
Hasegawa, M.16
Kiyoshima, H.17
Isobe, S.18
-
11
-
-
78751497117
-
NBRP, National Bioresource Project of Japan and plant bioresource management
-
Kurata N, Satoh H, Kitano H, Nagato Y, Endo T, Sato K, Akashi R, Ezura H, Kusaba M, Kobayashi M, Nitasaka E, Kasai F, Yamazaki Y, Yoshimura A (2010) NBRP, National Bioresource Project of Japan and plant bioresource management. Breed Sci 60: 461-468.
-
(2010)
Breed Sci
, vol.60
, pp. 461-468
-
-
Kurata, N.1
Satoh, H.2
Kitano, H.3
Nagato, Y.4
Endo, T.5
Sato, K.6
Akashi, R.7
Ezura, H.8
Kusaba, M.9
Kobayashi, M.10
Nitasaka, E.11
Kasai, F.12
Yamazaki, Y.13
Yoshimura, A.14
-
12
-
-
1542349036
-
Characterization and molecular genetic mapping of microsatellite loci in pepper
-
Lee JM, Nahm SH, Kim YM, Kim BD (2004) Characterization and molecular genetic mapping of microsatellite loci in pepper. Theor Appl Genet 108: 619-627.
-
(2004)
Theor Appl Genet
, vol.108
, pp. 619-627
-
-
Lee, J.M.1
Nahm, S.H.2
Kim, Y.M.3
Kim, B.D.4
-
13
-
-
33748449258
-
An SSR-based linkage map of Capsicum annuum
-
Minamiyama Y, Tsuro M, Hirai M (2006) An SSR-based linkage map of Capsicum annuum. Mol Breed 18: 157-169.
-
(2006)
Mol Breed
, vol.18
, pp. 157-169
-
-
Minamiyama, Y.1
Tsuro, M.2
Hirai, M.3
-
14
-
-
84858639538
-
An SSR-based genetic map of pepper (Capsicum annuum L.) serves as an anchor for the alignment of major pepper maps
-
Miura Y, Inoue T, Minamiyama Y, Kubo N (2012) An SSR-based genetic map of pepper (Capsicum annuum L.) serves as an anchor for the alignment of major pepper maps. Breed Sci 62: 93-98.
-
(2012)
Breed Sci
, vol.62
, pp. 93-98
-
-
Miura, Y.1
Inoue, T.2
Minamiyama, Y.3
Kubo, N.4
-
15
-
-
0043236225
-
Analysis of nuclear DNA content in Capsicum (Solanaceae) by flow cytometry and Feulgen densitometry
-
Moscone EA, Baranyi M, Ebert I, Greilhuber J, Ehrendorfer F, Hunziker AT (2003) Analysis of nuclear DNA content in Capsicum (Solanaceae) by flow cytometry and Feulgen densitometry. Ann Bot 92: 21-29.
-
(2003)
Ann Bot
, vol.92
, pp. 21-29
-
-
Moscone, E.A.1
Baranyi, M.2
Ebert, I.3
Greilhuber, J.4
Ehrendorfer, F.5
Hunziker, A.T.6
-
16
-
-
33645550939
-
Genetic structure of wild and domesticated populations of Capsicum annuum (Solanaceae) from northwestern Mexico analyzed by RAPDs
-
Oyama K, Hernández-Verdugo S, Sánchez C, González-Rodríguez A, Sánchez-Peña P, Garzón-Tiznado JA, Casas A (2006) Genetic structure of wild and domesticated populations of Capsicum annuum (Solanaceae) from northwestern Mexico analyzed by RAPDs. Genet Resour Crop Evol 53: 553-562.
-
(2006)
Genet Resour Crop Evol
, vol.53
, pp. 553-562
-
-
Oyama, K.1
Hernández-Verdugo, S.2
Sánchez, C.3
González-Rodríguez, A.4
Sánchez-Peña, P.5
Garzón-Tiznado, J.A.6
Casas, A.7
-
17
-
-
0031913117
-
Variation in Capsicum annuum revealed by RAPD and AFLP markers
-
Paran I, Aftergoot E, Shifriss C (1998) Variation in Capsicum annuum revealed by RAPD and AFLP markers. Euphytica 99: 167-173.
-
(1998)
Euphytica
, vol.99
, pp. 167-173
-
-
Paran, I.1
Aftergoot, E.2
Shifriss, C.3
-
18
-
-
3442896891
-
An integrated genetic linkage map of pepper (Capsicum spp.)
-
Paran I, van der Voort JR, Lefebvre V, Jahn M, Landry L, van Schriek M, Tanyolac B, Caranta C, Chaim AB, Livingstone K, Palloix A, Peleman J (2004) An integrated genetic linkage map of pepper (Capsicum spp.). Mol Breed 13: 251-261.
-
(2004)
Mol Breed
, vol.13
, pp. 251-261
-
-
Paran, I.1
van der Voort, J.R.2
Lefebvre, V.3
Jahn, M.4
Landry, L.5
van Schriek, M.6
Tanyolac, B.7
Caranta, C.8
Chaim, A.B.9
Livingstone, K.10
Palloix, A.11
Peleman, J.12
-
19
-
-
84871931088
-
Capsicums
-
In: Cole C (ed), Springer, New York
-
Paran I, Ben-Chaim A, Kang BC, Jahn M (2007) Capsicums. In: Cole C (ed) Genome mapping and molecular breeding in plants, vol 5. Springer, New York, pp 209-226.
-
(2007)
Genome mapping and molecular breeding in plants
, vol.5
, pp. 209-226
-
-
Paran, I.1
Ben-Chaim, A.2
Kang, B.C.3
Jahn, M.4
-
20
-
-
80054708224
-
Genic microsatellite markers in Brassica rapa: development, characterization, mapping, and their utility in other cultivated and wild Brassica relatives
-
Ramchiary N, Nguyen VD, Li X, Hong CP, Dhandapani V, Choi SR, Yu G, Piao ZY, Lim YP (2011) Genic microsatellite markers in Brassica rapa: development, characterization, mapping, and their utility in other cultivated and wild Brassica relatives. DNA Res 18: 305-320.
-
(2011)
DNA Res
, vol.18
, pp. 305-320
-
-
Ramchiary, N.1
Nguyen, V.D.2
Li, X.3
Hong, C.P.4
Dhandapani, V.5
Choi, S.R.6
Yu, G.7
Piao, Z.Y.8
Lim, Y.P.9
-
21
-
-
0032802616
-
Variation among and within Capsicum species revealed by RAPD markers
-
Rodriguez JM, Berke T, Engle L, Nienhuis J (1999) Variation among and within Capsicum species revealed by RAPD markers. Theor Appl Genet 99: 147-156.
-
(1999)
Theor Appl Genet
, vol.99
, pp. 147-156
-
-
Rodriguez, J.M.1
Berke, T.2
Engle, L.3
Nienhuis, J.4
-
22
-
-
79955985754
-
Distribution of SUN, OVATE, LC, and FAS in the tomato germplasm and the relationship to fruit shape diversity
-
Rodríguez GR, Muños S, Anderson C, Sim SC, Michel A, Causse M, Gardener BB, Francis D, van der Knaap E (2011) Distribution of SUN, OVATE, LC, and FAS in the tomato germplasm and the relationship to fruit shape diversity. Plant Physiol 156: 275-285.
-
(2011)
Plant Physiol
, vol.156
, pp. 275-285
-
-
Rodríguez, G.R.1
Muños, S.2
Anderson, C.3
Sim, S.C.4
Michel, A.5
Causse, M.6
Gardener, B.B.7
Francis, D.8
van der Knaap, E.9
-
23
-
-
78049403841
-
An interspecific linkage map of SSR and intronic polymorphism markers in tomato
-
Shirasawa K, Asamizu E, Fukuoka H, Ohyama A, Sato S, Nakamura Y, Tabata S, Sasamoto S, Wada T, Kishida Y, Tsuruoka H, Fujishiro T, Yamada M, Isobe S (2010) An interspecific linkage map of SSR and intronic polymorphism markers in tomato. Theor Appl Genet 121: 731-739.
-
(2010)
Theor Appl Genet
, vol.121
, pp. 731-739
-
-
Shirasawa, K.1
Asamizu, E.2
Fukuoka, H.3
Ohyama, A.4
Sato, S.5
Nakamura, Y.6
Tabata, S.7
Sasamoto, S.8
Wada, T.9
Kishida, Y.10
Tsuruoka, H.11
Fujishiro, T.12
Yamada, M.13
Isobe, S.14
-
24
-
-
80051963684
-
An EST-SSR linkage map of Raphanus sativus and comparative genomics of the Brassicaceae
-
Shirasawa K, Oyama M, Hirakawa H, Sato S, Tabata S, Fujioka T, Kimizuka-Takagi C, Sasamoto S, Watanabe A, Kato M, Kishida Y, Kohara M, Takahashi C, Tsuruoka H, Wada T, Sakai T, Isobe S (2011) An EST-SSR linkage map of Raphanus sativus and comparative genomics of the Brassicaceae. DNA Res 18: 221-232.
-
(2011)
DNA Res
, vol.18
, pp. 221-232
-
-
Shirasawa, K.1
Oyama, M.2
Hirakawa, H.3
Sato, S.4
Tabata, S.5
Fujioka, T.6
Kimizuka-Takagi, C.7
Sasamoto, S.8
Watanabe, A.9
Kato, M.10
Kishida, Y.11
Kohara, M.12
Takahashi, C.13
Tsuruoka, H.14
Wada, T.15
Sakai, T.16
Isobe, S.17
-
25
-
-
84861799933
-
In silico polymorphism analysis for the development of simple sequence repeat and transposon markers and construction of linkage map in cultivated peanut
-
Shirasawa K, Koilkonda P, Aoki K, Hirakawa H, Tabata S, Watanabe M, Hasegawa M, Kiyoshima H, Suzuki S, Kuwata C, Naito Y, Kuboyama T, Nakaya A, Sasamoto S, Watanabe A, Kato M, Kawashima K, Kishida Y, Kohara M, Kurabayashi A, Takahashi C, Tsuruoka H, Wada T, Isobe S (2012) In silico polymorphism analysis for the development of simple sequence repeat and transposon markers and construction of linkage map in cultivated peanut. BMC Plant Biol 12: 80.
-
(2012)
BMC Plant Biol
, vol.12
, pp. 80
-
-
Shirasawa, K.1
Koilkonda, P.2
Aoki, K.3
Hirakawa, H.4
Tabata, S.5
Watanabe, M.6
Hasegawa, M.7
Kiyoshima, H.8
Suzuki, S.9
Kuwata, C.10
Naito, Y.11
Kuboyama, T.12
Nakaya, A.13
Sasamoto, S.14
Watanabe, A.15
Kato, M.16
Kawashima, K.17
Kishida, Y.18
Kohara, M.19
Kurabayashi, A.20
Takahashi, C.21
Tsuruoka, H.22
Wada, T.23
Isobe, S.24
more..
-
26
-
-
68149094248
-
Gene banks for a warming planet
-
Swaminathan MS (2009) Gene banks for a warming planet. Science 325: 517.
-
(2009)
Science
, vol.325
, pp. 517
-
-
Swaminathan, M.S.1
-
27
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
28
-
-
53549107768
-
Large-scale identification of polymorphic microsatellites using an in silico approach
-
Tang J, Baldwin SJ, Jacobs JM, Linden CG, Voorrips RE, Leunissen JA, van Eck H, Vosman B (2008) Large-scale identification of polymorphic microsatellites using an in silico approach. BMC Bioinform 9: 374.
-
(2008)
BMC Bioinform
, vol.9
, pp. 374
-
-
Tang, J.1
Baldwin, S.J.2
Jacobs, J.M.3
Linden, C.G.4
Voorrips, R.E.5
Leunissen, J.A.6
van Eck, H.7
Vosman, B.8
-
29
-
-
79960422847
-
Genome sequence and analysis of the tuber crop potato
-
The Potato Genome Sequencing Consortium
-
The Potato Genome Sequencing Consortium (2011) Genome sequence and analysis of the tuber crop potato. Nature 475: 189-195.
-
(2011)
Nature
, vol.475
, pp. 189-195
-
-
-
30
-
-
84863693752
-
The tomato genome sequence provides insights into fleshy fruit evolution
-
The Tomato Genome Consortium
-
The Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485: 635-641.
-
(2012)
Nature
, vol.485
, pp. 635-641
-
-
-
31
-
-
0033858199
-
Microsatellites in different eukaryotic genomes: survey and analysis
-
Tóth G, Gáspári Z, Jurka J (2000) Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res 10: 967-981.
-
(2000)
Genome Res
, vol.10
, pp. 967-981
-
-
Tóth, G.1
Gáspári, Z.2
Jurka, J.3
-
32
-
-
41149088184
-
GGT 2.0: versatile software for visualization and analysis of genetic data
-
van Berloo R (2008) GGT 2. 0: versatile software for visualization and analysis of genetic data. J Hered 99: 232-236.
-
(2008)
J Hered
, vol.99
, pp. 232-236
-
-
van Berloo, R.1
-
33
-
-
0034751894
-
Phylogenetic relationships of Capsicum (Solanaceae) using DNA sequences from two noncoding regions: the chloroplast atpB-rbcL spacer region and nuclear waxy introns
-
Walsh BM, Hoot SB (2001) Phylogenetic relationships of Capsicum (Solanaceae) using DNA sequences from two noncoding regions: the chloroplast atpB-rbcL spacer region and nuclear waxy introns. Int J Plant Sci 162: 1409-1418.
-
(2001)
Int J Plant Sci
, vol.162
, pp. 1409-1418
-
-
Walsh, B.M.1
Hoot, S.B.2
-
34
-
-
77951913568
-
Chromosomal evolution in the plant family Solanaceae
-
Wu F, Tanksley SD (2010) Chromosomal evolution in the plant family Solanaceae. BMC Genomics 11: 182.
-
(2010)
BMC Genomics
, vol.11
, pp. 182
-
-
Wu, F.1
Tanksley, S.D.2
-
35
-
-
67349166578
-
A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum
-
Wu F, Eannetta NT, Xu Y, Durrett R, Mazourek M, Jahn MM, Tanksley SD (2009) A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum. Theor Appl Genet 118: 1279-1293.
-
(2009)
Theor Appl Genet
, vol.118
, pp. 1279-1293
-
-
Wu, F.1
Eannetta, N.T.2
Xu, Y.3
Durrett, R.4
Mazourek, M.5
Jahn, M.M.6
Tanksley, S.D.7
-
36
-
-
33751207081
-
Exploitation of pepper EST-SSRs and an SSR-based linkage map
-
Yi G, Lee JM, Lee S, Choi D, Kim BD (2006) Exploitation of pepper EST-SSRs and an SSR-based linkage map. Theor Appl Genet 114: 113-130.
-
(2006)
Theor Appl Genet
, vol.114
, pp. 113-130
-
-
Yi, G.1
Lee, J.M.2
Lee, S.3
Choi, D.4
Kim, B.D.5
|