-
1
-
-
0033807934
-
Boron supplementation of a semipurified diet for weanling pigs improves feed efficiency and bone strength characteristics and alters plasma lipid metabolites
-
Armstrong, T. A., Spears, J. W., Crenshaw, T. D., and Nielsen, F. H. (2000). Boron supplementation of a semipurified diet for weanling pigs improves feed efficiency and bone strength characteristics and alters plasma lipid metabolites. J. Nutr. 130, 2575-2581
-
(2000)
J. Nutr
, vol.130
, pp. 2575-2581
-
-
Armstrong, T.A.1
Spears, J.W.2
Crenshaw, T.D.3
Nielsen, F.H.4
-
2
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., et al. (2011). Enterotypes of the human gut microbiome. Nature 473, 174-180. doi: 10.1038/nature09944
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
-
3
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
Backhed, F., Ley, R. E., Sonnenburg, J. L., Peterson, D. A., and Gordon, J. I. (2005). Host-bacterial mutualism in the human intestine. Science 307, 1915-1920. doi: 10.1126/science.1104816
-
(2005)
Science
, vol.307
, pp. 1915-1920
-
-
Backhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
4
-
-
84867745001
-
Host genetic and environmental effects on mouse intestinal microbiota
-
Campbell, J. H., Foster, C. M., Vishnivetskaya, T., Campbell, A. G., Yang, Z. K., Wymore, A., et al. (2012). Host genetic and environmental effects on mouse intestinal microbiota. ISME J. 6, 2033-2044. doi: 10.1038/ismej.2012.54
-
(2012)
ISME J
, vol.6
, pp. 2033-2044
-
-
Campbell, J.H.1
Foster, C.M.2
Vishnivetskaya, T.3
Campbell, A.G.4
Yang, Z.K.5
Wymore, A.6
-
5
-
-
85027712590
-
-
1ères Rencontres, R.Hal-00717497, version 1
-
Cao, K. A. L., Déjean, S., and González, I. (2012). Unravelling 'Omics' Data with the R Package Mixomics. 1ères Rencontres, R.Hal-00717497, version 1
-
(2012)
Unravelling 'Omics' Data with the R Package Mixomics
-
-
Cao, K.A.L.1
Déjean, S.2
González, I.3
-
6
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., et al. (2010). QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336. doi: 10.1038/nmeth.f.303
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
7
-
-
79960501919
-
Interaction between obesity and the gut microbiota: relevance in nutrition
-
Delzenne, N. M., and Cani, P. D. (2011). Interaction between obesity and the gut microbiota: relevance in nutrition. Annu. Rev. Nutr. 31, 15-31. doi: 10.1146/annurev-nutr-072610-145146
-
(2011)
Annu. Rev. Nutr
, vol.31
, pp. 15-31
-
-
Delzenne, N.M.1
Cani, P.D.2
-
8
-
-
35348961403
-
An ecological and evolutionary perspective on human-microbe mutualism and disease
-
Dethlefsen, L., McFall-Ngai, M., and Relman, D. A. (2007). An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 449, 811-818. doi: 10.1038/nature06245
-
(2007)
Nature
, vol.449
, pp. 811-818
-
-
Dethlefsen, L.1
McFall-Ngai, M.2
Relman, D.A.3
-
9
-
-
1142306112
-
VEGAN, a package of R functions for community ecology
-
Dixon, P. (2004). VEGAN, a package of R functions for community ecology. J. Veg. Sci. 14, 927-930. doi: 10.1111/j.1654-1103.2003.tb02228.x
-
(2004)
J. Veg. Sci
, vol.14
, pp. 927-930
-
-
Dixon, P.1
-
10
-
-
84899090680
-
Replication of obesity and associated signaling pathways through transfer of microbiota from obese-prone rats
-
Duca, F. A., Sakar, Y., Lepage, P., Devime, F., Langelier, B., Dore, J., et al. (2014). Replication of obesity and associated signaling pathways through transfer of microbiota from obese-prone rats. Diabetes 63, 1624-1636. doi: 10.2337/db13-1526
-
(2014)
Diabetes
, vol.63
, pp. 1624-1636
-
-
Duca, F.A.1
Sakar, Y.2
Lepage, P.3
Devime, F.4
Langelier, B.5
Dore, J.6
-
11
-
-
84917735497
-
An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
-
Fadrosh, D. W., Ma, B., Gajer, P., Sengamalay, N., Ott, S., Brotman, R. M., et al. (2014). An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform. Microbiome 2:6. doi: 10.1186/2049-2618-2-6
-
(2014)
Microbiome
, vol.2
, pp. 6
-
-
Fadrosh, D.W.1
Ma, B.2
Gajer, P.3
Sengamalay, N.4
Ott, S.5
Brotman, R.M.6
-
12
-
-
84863217722
-
Characterization of Pseudomonas mendocina LR capable of removing nitrogen from various nitrogen-contaminated water samples when cultivated with Cyperus alternifolius L
-
Feng, Z., Li, X., Lu, C., Shen, Z., Xu, F., and Chen, Y. (2012). Characterization of Pseudomonas mendocina LR capable of removing nitrogen from various nitrogen-contaminated water samples when cultivated with Cyperus alternifolius L. J. Biosci. Bioeng. 114, 182-187. doi: 10.1016/j.jbiosc.2012.03.008
-
(2012)
J. Biosci. Bioeng
, vol.114
, pp. 182-187
-
-
Feng, Z.1
Li, X.2
Lu, C.3
Shen, Z.4
Xu, F.5
Chen, Y.6
-
13
-
-
38349049462
-
Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
-
Flint, H. J., Bayer, E. A., Rincon, M. T., Lamed, R., and White, B. A. (2008). Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nat. Rev. Microbiol. 6, 121-131. doi: 10.1038/nrmicro1817
-
(2008)
Nat. Rev. Microbiol
, vol.6
, pp. 121-131
-
-
Flint, H.J.1
Bayer, E.A.2
Rincon, M.T.3
Lamed, R.4
White, B.A.5
-
14
-
-
84942870086
-
The gut microbiome contributes to a substantial proportion of the variation in blood lipids
-
Fu, J., Bonder, M. J., Cenit, M. C., Tigchelaar, E. F., Maatman, A., Dekens, J. A., et al. (2015). The gut microbiome contributes to a substantial proportion of the variation in blood lipids. Circ. Res. 117, 817-824. doi: 10.1161/CIRCRESAHA.115.306807
-
(2015)
Circ. Res
, vol.117
, pp. 817-824
-
-
Fu, J.1
Bonder, M.J.2
Cenit, M.C.3
Tigchelaar, E.F.4
Maatman, A.5
Dekens, J.A.6
-
15
-
-
0027404555
-
Sulphate reducing bacteria and hydrogen metabolism in the human large intestine
-
Gibson, G. R., Macfarlane, G. T., and Cummings, J. H. (1993). Sulphate reducing bacteria and hydrogen metabolism in the human large intestine. Gut 34, 437-439. doi: 10.1136/gut.34.4.437
-
(1993)
Gut
, vol.34
, pp. 437-439
-
-
Gibson, G.R.1
Macfarlane, G.T.2
Cummings, J.H.3
-
16
-
-
84856563821
-
Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
-
Gihring, T. M., Green, S. J., and Schadt, C. W. (2012). Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes. Environ. Microbiol. 14, 285-290. doi: 10.1111/j.1462-2920.2011.02550.x
-
(2012)
Environ. Microbiol
, vol.14
, pp. 285-290
-
-
Gihring, T.M.1
Green, S.J.2
Schadt, C.W.3
-
17
-
-
85010858397
-
Review: divergent selection for residual feed intake in the growing pig
-
Gilbert, H., Billon, Y., Brossard, L., Faure, J., Gatellier, P., Gondret, F., et al. (2017). Review: divergent selection for residual feed intake in the growing pig. Animal 25, 1-13. doi: 10.1017/S175173111600286X
-
(2017)
Animal
, vol.25
, pp. 1-13
-
-
Gilbert, H.1
Billon, Y.2
Brossard, L.3
Faure, J.4
Gatellier, P.5
Gondret, F.6
-
18
-
-
84910096224
-
Human genetics shape the gut microbiome
-
Goodrich, J. K., Waters, J. L., Poole, A. C., Sutter, J. L., Koren, O., Blekhman, R., et al. (2014). Human genetics shape the gut microbiome. Cell 159, 789-799. doi: 10.1016/j.cell.2014.09.053
-
(2014)
Cell
, vol.159
, pp. 789-799
-
-
Goodrich, J.K.1
Waters, J.L.2
Poole, A.C.3
Sutter, J.L.4
Koren, O.5
Blekhman, R.6
-
19
-
-
84856011484
-
Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
-
Greenblum, S., Turnbaugh, P. J., and Borenstein, E. (2012). Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proc. Natl. Acad. Sci. U.S.A. 109, 594-599. doi: 10.1073/pnas.1116053109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, pp. 594-599
-
-
Greenblum, S.1
Turnbaugh, P.J.2
Borenstein, E.3
-
20
-
-
0000538256
-
Relations among individual (residual) feed intake, growth performance and feed intake pattern of growing pigs in group housing
-
Haer, L. C. M. D., Luiting, P., and Aarts, H. L. M. (1993). Relations among individual (residual) feed intake, growth performance and feed intake pattern of growing pigs in group housing. Livest. Prod. Sci. 36, 233-253. doi: 10.1016/0301-6226(93)90056-N
-
(1993)
Livest. Prod. Sci
, vol.36
, pp. 233-253
-
-
Haer, L.C.M.D.1
Luiting, P.2
Aarts, H.L.M.3
-
21
-
-
84882720646
-
Improved nutrient digestibility and retention partially explains feed efficiency gains in pigs selected for low residual feed intake
-
Harris, A. J., Patience, J. F., Lonergan, S. M., Dekkers, C., and Gabler, N. K. (2012). Improved nutrient digestibility and retention partially explains feed efficiency gains in pigs selected for low residual feed intake. J. Anim. Sci. 90(Suppl. 4), 164-166. doi: 10.2527/jas.53855
-
(2012)
J. Anim. Sci
, vol.90
, pp. 164-166
-
-
Harris, A.J.1
Patience, J.F.2
Lonergan, S.M.3
Dekkers, C.4
Gabler, N.K.5
-
22
-
-
27644566746
-
The application of rarefaction techniques to molecular inventories of microbial diversity
-
Hughes, J. B., and Hellmann, J. J. (2005). The application of rarefaction techniques to molecular inventories of microbial diversity. Meth. Enzymol. 397, 292-308. doi: 10.1016/S0076-6879(05)97017-1
-
(2005)
Meth. Enzymol
, vol.397
, pp. 292-308
-
-
Hughes, J.B.1
Hellmann, J.J.2
-
23
-
-
80052549504
-
Integrative analysis of environmental sequences using MEGAN4
-
Huson, D. H., Mitra, S., Ruscheweyh, H. J., Weber, N., and Schuster, S. C. (2011). Integrative analysis of environmental sequences using MEGAN4. Genome Res. 21, 1552-1560. doi: 10.1101/gr.120618.111
-
(2011)
Genome Res
, vol.21
, pp. 1552-1560
-
-
Huson, D.H.1
Mitra, S.2
Ruscheweyh, H.J.3
Weber, N.4
Schuster, S.C.5
-
24
-
-
84875805989
-
The intestinal microbiome of the pig
-
Isaacson, R., and Kim, H. B. (2012). The intestinal microbiome of the pig. Anim. Health Res. Rev. 13, 100-109. doi: 10.1017/S1466252312000084
-
(2012)
Anim. Health Res. Rev
, vol.13
, pp. 100-109
-
-
Isaacson, R.1
Kim, H.B.2
-
25
-
-
84855677339
-
Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera
-
Kalyuzhnaya, M. G., Beck, D. A., Vorobev, A., Smalley, N., Kunkel, D. D., Lidstrom, M. E., et al. (2012). Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera. Int. J. Syst. Evol. Microbiol. 62(Pt 1), 106-111. doi: 10.1099/ijs.0.029165-0
-
(2012)
Int. J. Syst. Evol. Microbiol
, vol.62
, pp. 106-111
-
-
Kalyuzhnaya, M.G.1
Beck, D.A.2
Vorobev, A.3
Smalley, N.4
Kunkel, D.D.5
Lidstrom, M.E.6
-
26
-
-
33644874819
-
From genomics to chemical genomics: new developments in KEGG
-
Kanehisa, M., Goto, S., Hattori, M., Aoki-Kinoshita, K. F., Itoh, M., Kawashima, S., et al. (2006). From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res. 34, D354-D357. doi: 10.1093/nar/gkj102
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D354-D357
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
-
27
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa, M., Goto, S., Kawashima, S., Okuno, Y., and Hattori, M. (2004). The KEGG resource for deciphering the genome. Nucleic Acids Res. 32, D277-D280. doi: 10.1093/nar/gkh063
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D277-D280
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
28
-
-
84866551081
-
Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin
-
Kim, H. B., Borewicz, K., White, B. A., Singer, R. S., Sreevatsan, S., Tu, Z. J., et al. (2012). Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin. Proc. Natl. Acad. Sci. U.S.A. 109, 15485-15490. doi: 10.1073/pnas.1205147109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, pp. 15485-15490
-
-
Kim, H.B.1
Borewicz, K.2
White, B.A.3
Singer, R.S.4
Sreevatsan, S.5
Tu, Z.J.6
-
29
-
-
84908067044
-
Rethinking enterotypes
-
Knights, D., Ward, T. L., McKinlay, C. E., Miller, H., Gonzalez, A., McDonald, D., et al. (2014). Rethinking enterotypes. Cell Host Microbe 16, 433-437. doi: 10.1016/j.chom.2014.09.013
-
(2014)
Cell Host Microbe
, vol.16
, pp. 433-437
-
-
Knights, D.1
Ward, T.L.2
McKinlay, C.E.3
Miller, H.4
Gonzalez, A.5
McDonald, D.6
-
30
-
-
79955794476
-
Comparative fecal metagenomics unveils unique functional capacity of the swine gut
-
Lamendella, R., Domingo, J. W., Ghosh, S., Martinson, J., and Oerther, D. B. (2011). Comparative fecal metagenomics unveils unique functional capacity of the swine gut. BMC Microbiol. 11:103. doi: 10.1186/1471-2180-11-103
-
(2011)
BMC Microbiol
, vol.11
, pp. 103
-
-
Lamendella, R.1
Domingo, J.W.2
Ghosh, S.3
Martinson, J.4
Oerther, D.B.5
-
31
-
-
23344442120
-
Obesity alters gut microbial ecology
-
Ley, R. E., Backhed, F., Turnbaugh, P., Lozupone, C. A., Knight, R. D., and Gordon, J. I. (2005). Obesity alters gut microbial ecology. Proc. Natl. Acad. Sci. U.S.A. 102, 11070-11075. doi: 10.1073/pnas.0504978102
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 11070-11075
-
-
Ley, R.E.1
Backhed, F.2
Turnbaugh, P.3
Lozupone, C.A.4
Knight, R.D.5
Gordon, J.I.6
-
32
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li, W., and Godzik, A. (2006). Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22, 1658-1659. doi: 10.1093/bioinformatics/btl158
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
33
-
-
84904999639
-
Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations
-
Looft, T., Allen, H. K., Cantarel, B. L., Levine, U. Y., Bayles, D. O., Alt, D. P., et al. (2014). Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations. ISME J. 8, 1566-1576. doi: 10.1038/ismej.2014.12
-
(2014)
ISME J
, vol.8
, pp. 1566-1576
-
-
Looft, T.1
Allen, H.K.2
Cantarel, B.L.3
Levine, U.Y.4
Bayles, D.O.5
Alt, D.P.6
-
34
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
Lozupone, C., and Knight, R. (2005). UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71, 8228-8235. doi: 10.1128/AEM.71.12.8228-8235.2005
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
35
-
-
84942887758
-
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
-
Luo, R., Liu, B., Xie, Y., Li, Z., Huang, W., Yuan, J., et al. (2012). SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1:18. doi: 10.1186/2047-217X-1-18
-
(2012)
Gigascience
, vol.1
, pp. 18
-
-
Luo, R.1
Liu, B.2
Xie, Y.3
Li, Z.4
Huang, W.5
Yuan, J.6
-
36
-
-
84945433592
-
Early-life establishment of the swine gut microbiome and impact on host phenotypes
-
Mach, N., Berri, M., Estelle, J., Levenez, F., Lemonnier, G., Denis, C., et al. (2015). Early-life establishment of the swine gut microbiome and impact on host phenotypes. Environ. Microbiol. Rep. 7, 554-569. doi: 10.1111/1758-2229.12285
-
(2015)
Environ. Microbiol. Rep
, vol.7
, pp. 554-569
-
-
Mach, N.1
Berri, M.2
Estelle, J.3
Levenez, F.4
Lemonnier, G.5
Denis, C.6
-
37
-
-
84934989481
-
Bioinformatic amplicon read processing strategies strongly affect eukaryotic diversity and the taxonomic composition of communities
-
Majaneva, M., Hyytiainen, K., Varvio, S. L., Nagai, S., and Blomster, J. (2015). Bioinformatic amplicon read processing strategies strongly affect eukaryotic diversity and the taxonomic composition of communities. PLoS ONE 10:e0130035. doi: 10.1371/journal.pone.0130035
-
(2015)
PLoS ONE
, vol.10
-
-
Majaneva, M.1
Hyytiainen, K.2
Varvio, S.L.3
Nagai, S.4
Blomster, J.5
-
38
-
-
84975853850
-
Genetic variation in efficiency to deposit fat and lean meat in Norwegian Landrace and Duroc pigs
-
Martinsen, K. H., Odegard, J., Olsen, D., and Meuwissen, T. H. (2015). Genetic variation in efficiency to deposit fat and lean meat in Norwegian Landrace and Duroc pigs. J. Anim. Sci. 93, 3794-3800. doi: 10.2527/jas.2015-9174
-
(2015)
J. Anim. Sci
, vol.93
, pp. 3794-3800
-
-
Martinsen, K.H.1
Odegard, J.2
Olsen, D.3
Meuwissen, T.H.4
-
39
-
-
85026317330
-
Exploring a possible link between the intestinal microbiota and feed efficiency in pigs
-
McCormack, U. M., Curiao, T., Buzoianu, S. G., Prieto, M. L., Ryan, T., Varley, P., et al. (2017). Exploring a possible link between the intestinal microbiota and feed efficiency in pigs. Appl. Environ. Microbiol. 83:e00380-17. doi: 10.1128/AEM.00380-17
-
(2017)
Appl. Environ. Microbiol
, vol.83
-
-
McCormack, U.M.1
Curiao, T.2
Buzoianu, S.G.3
Prieto, M.L.4
Ryan, T.5
Varley, P.6
-
40
-
-
84855651037
-
Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. nov
-
Morotomi, M., Nagai, F., and Watanabe, Y. (2012). Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. nov. Int. J. Syst. Evol. Microbiol. 62(Pt 1), 144-149. doi: 10.1099/ijs.0.026989-0
-
(2012)
Int. J. Syst. Evol. Microbiol
, vol.62
, pp. 144-149
-
-
Morotomi, M.1
Nagai, F.2
Watanabe, Y.3
-
41
-
-
84908087729
-
Assessment of fecal bacterial diversity among healthy piglets during the weaning transition
-
Pajarillo, E. A. B., Chae, J. P., Balolong, M. P., Bum Kim, H., and Kang, D. K. (2014). Assessment of fecal bacterial diversity among healthy piglets during the weaning transition. J. Gen. Appl. Microbiol. 60, 140-146. doi: 10.2323/jgam.60.140
-
(2014)
J. Gen. Appl. Microbiol
, vol.60
, pp. 140-146
-
-
Pajarillo, E.A.B.1
Chae, J.P.2
Balolong, M.P.3
Bum Kim, H.4
Kang, D.K.5
-
42
-
-
84937202316
-
Metastats: an improved statistical method for analysis of metagenomic data
-
Paulson, J. N., Pop, M., and Bravo, H. C. (2011). Metastats: an improved statistical method for analysis of metagenomic data. Genome Biol. 12, 1-27. doi: 10.1186/1465-6906-12-S1-P17
-
(2011)
Genome Biol
, vol.12
, pp. 1-27
-
-
Paulson, J.N.1
Pop, M.2
Bravo, H.C.3
-
43
-
-
84978081339
-
Human gut microbes impact host serum metabolome and insulin sensitivity
-
Pedersen, H. K., Gudmundsdottir, V., Nielsen, H. B., Hyotylainen, T., Nielsen, T., Jensen, B. A., et al. (2016). Human gut microbes impact host serum metabolome and insulin sensitivity. Nature 535, 376-381. doi: 10.1038/nature18646
-
(2016)
Nature
, vol.535
, pp. 376-381
-
-
Pedersen, H.K.1
Gudmundsdottir, V.2
Nielsen, H.B.3
Hyotylainen, T.4
Nielsen, T.5
Jensen, B.A.6
-
44
-
-
0037126667
-
The microbiology of butyrate formation in the human colon
-
Pryde, S. E., Duncan, S. H., Hold, G. L., Stewart, C. S., and Flint, H. J. (2002). The microbiology of butyrate formation in the human colon. FEMS Microbiol. Lett. 217, 133-139. doi: 10.1111/j.1574-6968.2002.tb11467.x
-
(2002)
FEMS Microbiol. Lett
, vol.217
, pp. 133-139
-
-
Pryde, S.E.1
Duncan, S.H.2
Hold, G.L.3
Stewart, C.S.4
Flint, H.J.5
-
45
-
-
84867074831
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
-
Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., et al. (2012). A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490, 55-60. doi: 10.1038/nature11450
-
(2012)
Nature
, vol.490
, pp. 55-60
-
-
Qin, J.1
Li, Y.2
Cai, Z.3
Li, S.4
Zhu, J.5
Zhang, F.6
-
46
-
-
84968658925
-
Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits
-
Ramayo-Caldas, Y., Mach, N., Lepage, P., Levenez, F., Denis, C., Lemonnier, G., et al. (2016). Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits. ISME J. 10, 2973-2977. doi: 10.1038/ismej.2016.77
-
(2016)
ISME J
, vol.10
, pp. 2973-2977
-
-
Ramayo-Caldas, Y.1
Mach, N.2
Lepage, P.3
Levenez, F.4
Denis, C.5
Lemonnier, G.6
-
47
-
-
19544389161
-
Identification of the sequences involved in the glucose-repressed transcription of the Streptomyces halstedii JM8 xysA promoter
-
Rodríguez, S., Santamaría, R. I., Fernández-Abalos, J. M., and Díaz, M. (2005). Identification of the sequences involved in the glucose-repressed transcription of the Streptomyces halstedii JM8 xysA promoter. Gene 351, 1-9. doi: 10.1016/j.gene.2005.03.007
-
(2005)
Gene
, vol.351
, pp. 1-9
-
-
Rodríguez, S.1
Santamaría, R.I.2
Fernández-Abalos, J.M.3
Díaz, M.4
-
48
-
-
84919396599
-
Phenotypic and genetic relationships between growth and feed intake curves and feed efficiency and amino acid requirements in the growing pig
-
Saintilan, R., Brossard, L., Vautier, B., Sellier, P., Bidanel, J., Van Milgen, J., et al. (2015). Phenotypic and genetic relationships between growth and feed intake curves and feed efficiency and amino acid requirements in the growing pig. Animal 9, 18-27. doi: 10.1017/S1751731114002171
-
(2015)
Animal
, vol.9
, pp. 18-27
-
-
Saintilan, R.1
Brossard, L.2
Vautier, B.3
Sellier, P.4
Bidanel, J.5
Van Milgen, J.6
-
49
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., and Gordon, J. I. (2006). An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444, 1027-1031. doi: 10.1038/nature05414
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
50
-
-
84924094264
-
Application of a neutral community model to assess structuring of the human lung microbiome
-
Venkataraman, A., Bassis, C. M., Beck, J. M., Young, V. B., Curtis, J. L., Huffnagle, G. B., et al. (2015). Application of a neutral community model to assess structuring of the human lung microbiome. MBio 6:e02284-14. doi: 10.1128/mBio.02284-14
-
(2015)
MBio
, vol.6
-
-
Venkataraman, A.1
Bassis, C.M.2
Beck, J.M.3
Young, V.B.4
Curtis, J.L.5
Huffnagle, G.B.6
-
51
-
-
84966648810
-
Pigs that are divergent in feed efficiency, differ in intestinal enzyme and nutrient transporter gene expression, nutrient digestibility and microbial activity
-
Vigors, S., Sweeney, T., O'shea, C. J., Kelly, A. K., and O'doherty, J. (2016). Pigs that are divergent in feed efficiency, differ in intestinal enzyme and nutrient transporter gene expression, nutrient digestibility and microbial activity. Animal 10, 1848-1855. doi: 10.1017/S1751731116000847
-
(2016)
Animal
, vol.10
, pp. 1848-1855
-
-
Vigors, S.1
Sweeney, T.2
O'shea, C.J.3
Kelly, A.K.4
O'doherty, J.5
-
52
-
-
84876908605
-
The effects of supplementing varying molecular weights of chitooligosaccharide on performance, selected microbial populations and nutrient digestibility in the weaned pig
-
Walsh, A. M., Sweeney, T., Bahar, B., Flynn, B., and O'doherty, J. V. (2013). The effects of supplementing varying molecular weights of chitooligosaccharide on performance, selected microbial populations and nutrient digestibility in the weaned pig. Animal 7, 571-579. doi: 10.1017/S1751731112001759
-
(2013)
Animal
, vol.7
, pp. 571-579
-
-
Walsh, A.M.1
Sweeney, T.2
Bahar, B.3
Flynn, B.4
O'doherty, J.V.5
-
53
-
-
85020619038
-
Live Probiotic Lactobacillus johnsonii BS15 promotes growth performance and lowers fat deposition by improving lipid metabolism, intestinal development, and gut microflora in broilers
-
Wang, H., Ni, X., Qing, X., Zeng, D., Luo, M., Liu, L., et al. (2017). Live Probiotic Lactobacillus johnsonii BS15 promotes growth performance and lowers fat deposition by improving lipid metabolism, intestinal development, and gut microflora in broilers. Front. Microbiol. 8:1073. doi: 10.3389/fmicb.2017.01073
-
(2017)
Front. Microbiol
, vol.8
, pp. 1073
-
-
Wang, H.1
Ni, X.2
Qing, X.3
Zeng, D.4
Luo, M.5
Liu, L.6
-
54
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267. doi: 10.1128/AEM.00062-07
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
55
-
-
0026845981
-
Growth and carcass characteristics of pigs selected for fast or slow gain in relation to feed intake and efficiency
-
Woltmann, M. D., Clutter, A. C., Buchanan, D. S., and Dolezal, H. G. (1992). Growth and carcass characteristics of pigs selected for fast or slow gain in relation to feed intake and efficiency. J. Anim. Sci. 70, 1049-1059. doi: 10.2527/1992.7041049x
-
(1992)
J. Anim. Sci
, vol.70
, pp. 1049-1059
-
-
Woltmann, M.D.1
Clutter, A.C.2
Buchanan, D.S.3
Dolezal, H.G.4
-
56
-
-
84973390147
-
Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness
-
Yang, H., Huang, X., Fang, S., Xin, W., Huang, L., and Chen, C. (2016). Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness. Sci. Rep. 6:27427. doi: 10.1038/srep27427
-
(2016)
Sci. Rep
, vol.6
, pp. 27427
-
-
Yang, H.1
Huang, X.2
Fang, S.3
Xin, W.4
Huang, L.5
Chen, C.6
-
57
-
-
77955902981
-
Ab initio gene identification in metagenomic sequences
-
Zhu, W., Lomsadze, A., and Borodovsky, M. (2010). Ab initio gene identification in metagenomic sequences. Nucleic Acids Res. 38:e132. doi: 10.1093/nar/gkq275
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Zhu, W.1
Lomsadze, A.2
Borodovsky, M.3
|