메뉴 건너뛰기




Volumn 8, Issue AUG, 2017, Pages

Unraveling the fecal microbiota and metagenomic functional capacity associated with feed efficiency in pigs

Author keywords

16S rRNA gene; Feed efficiency; Gut microbiota; Metagenome; Swine

Indexed keywords


EID: 85027681938     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2017.01555     Document Type: Article
Times cited : (143)

References (57)
  • 1
    • 0033807934 scopus 로고    scopus 로고
    • Boron supplementation of a semipurified diet for weanling pigs improves feed efficiency and bone strength characteristics and alters plasma lipid metabolites
    • Armstrong, T. A., Spears, J. W., Crenshaw, T. D., and Nielsen, F. H. (2000). Boron supplementation of a semipurified diet for weanling pigs improves feed efficiency and bone strength characteristics and alters plasma lipid metabolites. J. Nutr. 130, 2575-2581
    • (2000) J. Nutr , vol.130 , pp. 2575-2581
    • Armstrong, T.A.1    Spears, J.W.2    Crenshaw, T.D.3    Nielsen, F.H.4
  • 3
    • 15544369658 scopus 로고    scopus 로고
    • Host-bacterial mutualism in the human intestine
    • Backhed, F., Ley, R. E., Sonnenburg, J. L., Peterson, D. A., and Gordon, J. I. (2005). Host-bacterial mutualism in the human intestine. Science 307, 1915-1920. doi: 10.1126/science.1104816
    • (2005) Science , vol.307 , pp. 1915-1920
    • Backhed, F.1    Ley, R.E.2    Sonnenburg, J.L.3    Peterson, D.A.4    Gordon, J.I.5
  • 4
    • 84867745001 scopus 로고    scopus 로고
    • Host genetic and environmental effects on mouse intestinal microbiota
    • Campbell, J. H., Foster, C. M., Vishnivetskaya, T., Campbell, A. G., Yang, Z. K., Wymore, A., et al. (2012). Host genetic and environmental effects on mouse intestinal microbiota. ISME J. 6, 2033-2044. doi: 10.1038/ismej.2012.54
    • (2012) ISME J , vol.6 , pp. 2033-2044
    • Campbell, J.H.1    Foster, C.M.2    Vishnivetskaya, T.3    Campbell, A.G.4    Yang, Z.K.5    Wymore, A.6
  • 7
    • 79960501919 scopus 로고    scopus 로고
    • Interaction between obesity and the gut microbiota: relevance in nutrition
    • Delzenne, N. M., and Cani, P. D. (2011). Interaction between obesity and the gut microbiota: relevance in nutrition. Annu. Rev. Nutr. 31, 15-31. doi: 10.1146/annurev-nutr-072610-145146
    • (2011) Annu. Rev. Nutr , vol.31 , pp. 15-31
    • Delzenne, N.M.1    Cani, P.D.2
  • 8
    • 35348961403 scopus 로고    scopus 로고
    • An ecological and evolutionary perspective on human-microbe mutualism and disease
    • Dethlefsen, L., McFall-Ngai, M., and Relman, D. A. (2007). An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 449, 811-818. doi: 10.1038/nature06245
    • (2007) Nature , vol.449 , pp. 811-818
    • Dethlefsen, L.1    McFall-Ngai, M.2    Relman, D.A.3
  • 9
    • 1142306112 scopus 로고    scopus 로고
    • VEGAN, a package of R functions for community ecology
    • Dixon, P. (2004). VEGAN, a package of R functions for community ecology. J. Veg. Sci. 14, 927-930. doi: 10.1111/j.1654-1103.2003.tb02228.x
    • (2004) J. Veg. Sci , vol.14 , pp. 927-930
    • Dixon, P.1
  • 10
    • 84899090680 scopus 로고    scopus 로고
    • Replication of obesity and associated signaling pathways through transfer of microbiota from obese-prone rats
    • Duca, F. A., Sakar, Y., Lepage, P., Devime, F., Langelier, B., Dore, J., et al. (2014). Replication of obesity and associated signaling pathways through transfer of microbiota from obese-prone rats. Diabetes 63, 1624-1636. doi: 10.2337/db13-1526
    • (2014) Diabetes , vol.63 , pp. 1624-1636
    • Duca, F.A.1    Sakar, Y.2    Lepage, P.3    Devime, F.4    Langelier, B.5    Dore, J.6
  • 11
    • 84917735497 scopus 로고    scopus 로고
    • An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
    • Fadrosh, D. W., Ma, B., Gajer, P., Sengamalay, N., Ott, S., Brotman, R. M., et al. (2014). An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform. Microbiome 2:6. doi: 10.1186/2049-2618-2-6
    • (2014) Microbiome , vol.2 , pp. 6
    • Fadrosh, D.W.1    Ma, B.2    Gajer, P.3    Sengamalay, N.4    Ott, S.5    Brotman, R.M.6
  • 12
    • 84863217722 scopus 로고    scopus 로고
    • Characterization of Pseudomonas mendocina LR capable of removing nitrogen from various nitrogen-contaminated water samples when cultivated with Cyperus alternifolius L
    • Feng, Z., Li, X., Lu, C., Shen, Z., Xu, F., and Chen, Y. (2012). Characterization of Pseudomonas mendocina LR capable of removing nitrogen from various nitrogen-contaminated water samples when cultivated with Cyperus alternifolius L. J. Biosci. Bioeng. 114, 182-187. doi: 10.1016/j.jbiosc.2012.03.008
    • (2012) J. Biosci. Bioeng , vol.114 , pp. 182-187
    • Feng, Z.1    Li, X.2    Lu, C.3    Shen, Z.4    Xu, F.5    Chen, Y.6
  • 13
    • 38349049462 scopus 로고    scopus 로고
    • Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
    • Flint, H. J., Bayer, E. A., Rincon, M. T., Lamed, R., and White, B. A. (2008). Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nat. Rev. Microbiol. 6, 121-131. doi: 10.1038/nrmicro1817
    • (2008) Nat. Rev. Microbiol , vol.6 , pp. 121-131
    • Flint, H.J.1    Bayer, E.A.2    Rincon, M.T.3    Lamed, R.4    White, B.A.5
  • 14
    • 84942870086 scopus 로고    scopus 로고
    • The gut microbiome contributes to a substantial proportion of the variation in blood lipids
    • Fu, J., Bonder, M. J., Cenit, M. C., Tigchelaar, E. F., Maatman, A., Dekens, J. A., et al. (2015). The gut microbiome contributes to a substantial proportion of the variation in blood lipids. Circ. Res. 117, 817-824. doi: 10.1161/CIRCRESAHA.115.306807
    • (2015) Circ. Res , vol.117 , pp. 817-824
    • Fu, J.1    Bonder, M.J.2    Cenit, M.C.3    Tigchelaar, E.F.4    Maatman, A.5    Dekens, J.A.6
  • 15
    • 0027404555 scopus 로고
    • Sulphate reducing bacteria and hydrogen metabolism in the human large intestine
    • Gibson, G. R., Macfarlane, G. T., and Cummings, J. H. (1993). Sulphate reducing bacteria and hydrogen metabolism in the human large intestine. Gut 34, 437-439. doi: 10.1136/gut.34.4.437
    • (1993) Gut , vol.34 , pp. 437-439
    • Gibson, G.R.1    Macfarlane, G.T.2    Cummings, J.H.3
  • 16
    • 84856563821 scopus 로고    scopus 로고
    • Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
    • Gihring, T. M., Green, S. J., and Schadt, C. W. (2012). Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes. Environ. Microbiol. 14, 285-290. doi: 10.1111/j.1462-2920.2011.02550.x
    • (2012) Environ. Microbiol , vol.14 , pp. 285-290
    • Gihring, T.M.1    Green, S.J.2    Schadt, C.W.3
  • 17
    • 85010858397 scopus 로고    scopus 로고
    • Review: divergent selection for residual feed intake in the growing pig
    • Gilbert, H., Billon, Y., Brossard, L., Faure, J., Gatellier, P., Gondret, F., et al. (2017). Review: divergent selection for residual feed intake in the growing pig. Animal 25, 1-13. doi: 10.1017/S175173111600286X
    • (2017) Animal , vol.25 , pp. 1-13
    • Gilbert, H.1    Billon, Y.2    Brossard, L.3    Faure, J.4    Gatellier, P.5    Gondret, F.6
  • 19
    • 84856011484 scopus 로고    scopus 로고
    • Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
    • Greenblum, S., Turnbaugh, P. J., and Borenstein, E. (2012). Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proc. Natl. Acad. Sci. U.S.A. 109, 594-599. doi: 10.1073/pnas.1116053109
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.109 , pp. 594-599
    • Greenblum, S.1    Turnbaugh, P.J.2    Borenstein, E.3
  • 20
    • 0000538256 scopus 로고
    • Relations among individual (residual) feed intake, growth performance and feed intake pattern of growing pigs in group housing
    • Haer, L. C. M. D., Luiting, P., and Aarts, H. L. M. (1993). Relations among individual (residual) feed intake, growth performance and feed intake pattern of growing pigs in group housing. Livest. Prod. Sci. 36, 233-253. doi: 10.1016/0301-6226(93)90056-N
    • (1993) Livest. Prod. Sci , vol.36 , pp. 233-253
    • Haer, L.C.M.D.1    Luiting, P.2    Aarts, H.L.M.3
  • 21
    • 84882720646 scopus 로고    scopus 로고
    • Improved nutrient digestibility and retention partially explains feed efficiency gains in pigs selected for low residual feed intake
    • Harris, A. J., Patience, J. F., Lonergan, S. M., Dekkers, C., and Gabler, N. K. (2012). Improved nutrient digestibility and retention partially explains feed efficiency gains in pigs selected for low residual feed intake. J. Anim. Sci. 90(Suppl. 4), 164-166. doi: 10.2527/jas.53855
    • (2012) J. Anim. Sci , vol.90 , pp. 164-166
    • Harris, A.J.1    Patience, J.F.2    Lonergan, S.M.3    Dekkers, C.4    Gabler, N.K.5
  • 22
    • 27644566746 scopus 로고    scopus 로고
    • The application of rarefaction techniques to molecular inventories of microbial diversity
    • Hughes, J. B., and Hellmann, J. J. (2005). The application of rarefaction techniques to molecular inventories of microbial diversity. Meth. Enzymol. 397, 292-308. doi: 10.1016/S0076-6879(05)97017-1
    • (2005) Meth. Enzymol , vol.397 , pp. 292-308
    • Hughes, J.B.1    Hellmann, J.J.2
  • 23
    • 80052549504 scopus 로고    scopus 로고
    • Integrative analysis of environmental sequences using MEGAN4
    • Huson, D. H., Mitra, S., Ruscheweyh, H. J., Weber, N., and Schuster, S. C. (2011). Integrative analysis of environmental sequences using MEGAN4. Genome Res. 21, 1552-1560. doi: 10.1101/gr.120618.111
    • (2011) Genome Res , vol.21 , pp. 1552-1560
    • Huson, D.H.1    Mitra, S.2    Ruscheweyh, H.J.3    Weber, N.4    Schuster, S.C.5
  • 24
    • 84875805989 scopus 로고    scopus 로고
    • The intestinal microbiome of the pig
    • Isaacson, R., and Kim, H. B. (2012). The intestinal microbiome of the pig. Anim. Health Res. Rev. 13, 100-109. doi: 10.1017/S1466252312000084
    • (2012) Anim. Health Res. Rev , vol.13 , pp. 100-109
    • Isaacson, R.1    Kim, H.B.2
  • 25
    • 84855677339 scopus 로고    scopus 로고
    • Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera
    • Kalyuzhnaya, M. G., Beck, D. A., Vorobev, A., Smalley, N., Kunkel, D. D., Lidstrom, M. E., et al. (2012). Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera. Int. J. Syst. Evol. Microbiol. 62(Pt 1), 106-111. doi: 10.1099/ijs.0.029165-0
    • (2012) Int. J. Syst. Evol. Microbiol , vol.62 , pp. 106-111
    • Kalyuzhnaya, M.G.1    Beck, D.A.2    Vorobev, A.3    Smalley, N.4    Kunkel, D.D.5    Lidstrom, M.E.6
  • 28
    • 84866551081 scopus 로고    scopus 로고
    • Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin
    • Kim, H. B., Borewicz, K., White, B. A., Singer, R. S., Sreevatsan, S., Tu, Z. J., et al. (2012). Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin. Proc. Natl. Acad. Sci. U.S.A. 109, 15485-15490. doi: 10.1073/pnas.1205147109
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.109 , pp. 15485-15490
    • Kim, H.B.1    Borewicz, K.2    White, B.A.3    Singer, R.S.4    Sreevatsan, S.5    Tu, Z.J.6
  • 30
    • 79955794476 scopus 로고    scopus 로고
    • Comparative fecal metagenomics unveils unique functional capacity of the swine gut
    • Lamendella, R., Domingo, J. W., Ghosh, S., Martinson, J., and Oerther, D. B. (2011). Comparative fecal metagenomics unveils unique functional capacity of the swine gut. BMC Microbiol. 11:103. doi: 10.1186/1471-2180-11-103
    • (2011) BMC Microbiol , vol.11 , pp. 103
    • Lamendella, R.1    Domingo, J.W.2    Ghosh, S.3    Martinson, J.4    Oerther, D.B.5
  • 32
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li, W., and Godzik, A. (2006). Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22, 1658-1659. doi: 10.1093/bioinformatics/btl158
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 33
    • 84904999639 scopus 로고    scopus 로고
    • Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations
    • Looft, T., Allen, H. K., Cantarel, B. L., Levine, U. Y., Bayles, D. O., Alt, D. P., et al. (2014). Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations. ISME J. 8, 1566-1576. doi: 10.1038/ismej.2014.12
    • (2014) ISME J , vol.8 , pp. 1566-1576
    • Looft, T.1    Allen, H.K.2    Cantarel, B.L.3    Levine, U.Y.4    Bayles, D.O.5    Alt, D.P.6
  • 34
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone, C., and Knight, R. (2005). UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71, 8228-8235. doi: 10.1128/AEM.71.12.8228-8235.2005
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 35
    • 84942887758 scopus 로고    scopus 로고
    • SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
    • Luo, R., Liu, B., Xie, Y., Li, Z., Huang, W., Yuan, J., et al. (2012). SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1:18. doi: 10.1186/2047-217X-1-18
    • (2012) Gigascience , vol.1 , pp. 18
    • Luo, R.1    Liu, B.2    Xie, Y.3    Li, Z.4    Huang, W.5    Yuan, J.6
  • 36
    • 84945433592 scopus 로고    scopus 로고
    • Early-life establishment of the swine gut microbiome and impact on host phenotypes
    • Mach, N., Berri, M., Estelle, J., Levenez, F., Lemonnier, G., Denis, C., et al. (2015). Early-life establishment of the swine gut microbiome and impact on host phenotypes. Environ. Microbiol. Rep. 7, 554-569. doi: 10.1111/1758-2229.12285
    • (2015) Environ. Microbiol. Rep , vol.7 , pp. 554-569
    • Mach, N.1    Berri, M.2    Estelle, J.3    Levenez, F.4    Lemonnier, G.5    Denis, C.6
  • 37
    • 84934989481 scopus 로고    scopus 로고
    • Bioinformatic amplicon read processing strategies strongly affect eukaryotic diversity and the taxonomic composition of communities
    • Majaneva, M., Hyytiainen, K., Varvio, S. L., Nagai, S., and Blomster, J. (2015). Bioinformatic amplicon read processing strategies strongly affect eukaryotic diversity and the taxonomic composition of communities. PLoS ONE 10:e0130035. doi: 10.1371/journal.pone.0130035
    • (2015) PLoS ONE , vol.10
    • Majaneva, M.1    Hyytiainen, K.2    Varvio, S.L.3    Nagai, S.4    Blomster, J.5
  • 38
    • 84975853850 scopus 로고    scopus 로고
    • Genetic variation in efficiency to deposit fat and lean meat in Norwegian Landrace and Duroc pigs
    • Martinsen, K. H., Odegard, J., Olsen, D., and Meuwissen, T. H. (2015). Genetic variation in efficiency to deposit fat and lean meat in Norwegian Landrace and Duroc pigs. J. Anim. Sci. 93, 3794-3800. doi: 10.2527/jas.2015-9174
    • (2015) J. Anim. Sci , vol.93 , pp. 3794-3800
    • Martinsen, K.H.1    Odegard, J.2    Olsen, D.3    Meuwissen, T.H.4
  • 39
    • 85026317330 scopus 로고    scopus 로고
    • Exploring a possible link between the intestinal microbiota and feed efficiency in pigs
    • McCormack, U. M., Curiao, T., Buzoianu, S. G., Prieto, M. L., Ryan, T., Varley, P., et al. (2017). Exploring a possible link between the intestinal microbiota and feed efficiency in pigs. Appl. Environ. Microbiol. 83:e00380-17. doi: 10.1128/AEM.00380-17
    • (2017) Appl. Environ. Microbiol , vol.83
    • McCormack, U.M.1    Curiao, T.2    Buzoianu, S.G.3    Prieto, M.L.4    Ryan, T.5    Varley, P.6
  • 40
    • 84855651037 scopus 로고    scopus 로고
    • Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. nov
    • Morotomi, M., Nagai, F., and Watanabe, Y. (2012). Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. nov. Int. J. Syst. Evol. Microbiol. 62(Pt 1), 144-149. doi: 10.1099/ijs.0.026989-0
    • (2012) Int. J. Syst. Evol. Microbiol , vol.62 , pp. 144-149
    • Morotomi, M.1    Nagai, F.2    Watanabe, Y.3
  • 41
    • 84908087729 scopus 로고    scopus 로고
    • Assessment of fecal bacterial diversity among healthy piglets during the weaning transition
    • Pajarillo, E. A. B., Chae, J. P., Balolong, M. P., Bum Kim, H., and Kang, D. K. (2014). Assessment of fecal bacterial diversity among healthy piglets during the weaning transition. J. Gen. Appl. Microbiol. 60, 140-146. doi: 10.2323/jgam.60.140
    • (2014) J. Gen. Appl. Microbiol , vol.60 , pp. 140-146
    • Pajarillo, E.A.B.1    Chae, J.P.2    Balolong, M.P.3    Bum Kim, H.4    Kang, D.K.5
  • 42
    • 84937202316 scopus 로고    scopus 로고
    • Metastats: an improved statistical method for analysis of metagenomic data
    • Paulson, J. N., Pop, M., and Bravo, H. C. (2011). Metastats: an improved statistical method for analysis of metagenomic data. Genome Biol. 12, 1-27. doi: 10.1186/1465-6906-12-S1-P17
    • (2011) Genome Biol , vol.12 , pp. 1-27
    • Paulson, J.N.1    Pop, M.2    Bravo, H.C.3
  • 44
    • 0037126667 scopus 로고    scopus 로고
    • The microbiology of butyrate formation in the human colon
    • Pryde, S. E., Duncan, S. H., Hold, G. L., Stewart, C. S., and Flint, H. J. (2002). The microbiology of butyrate formation in the human colon. FEMS Microbiol. Lett. 217, 133-139. doi: 10.1111/j.1574-6968.2002.tb11467.x
    • (2002) FEMS Microbiol. Lett , vol.217 , pp. 133-139
    • Pryde, S.E.1    Duncan, S.H.2    Hold, G.L.3    Stewart, C.S.4    Flint, H.J.5
  • 45
    • 84867074831 scopus 로고    scopus 로고
    • A metagenome-wide association study of gut microbiota in type 2 diabetes
    • Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., et al. (2012). A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490, 55-60. doi: 10.1038/nature11450
    • (2012) Nature , vol.490 , pp. 55-60
    • Qin, J.1    Li, Y.2    Cai, Z.3    Li, S.4    Zhu, J.5    Zhang, F.6
  • 46
    • 84968658925 scopus 로고    scopus 로고
    • Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits
    • Ramayo-Caldas, Y., Mach, N., Lepage, P., Levenez, F., Denis, C., Lemonnier, G., et al. (2016). Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits. ISME J. 10, 2973-2977. doi: 10.1038/ismej.2016.77
    • (2016) ISME J , vol.10 , pp. 2973-2977
    • Ramayo-Caldas, Y.1    Mach, N.2    Lepage, P.3    Levenez, F.4    Denis, C.5    Lemonnier, G.6
  • 47
    • 19544389161 scopus 로고    scopus 로고
    • Identification of the sequences involved in the glucose-repressed transcription of the Streptomyces halstedii JM8 xysA promoter
    • Rodríguez, S., Santamaría, R. I., Fernández-Abalos, J. M., and Díaz, M. (2005). Identification of the sequences involved in the glucose-repressed transcription of the Streptomyces halstedii JM8 xysA promoter. Gene 351, 1-9. doi: 10.1016/j.gene.2005.03.007
    • (2005) Gene , vol.351 , pp. 1-9
    • Rodríguez, S.1    Santamaría, R.I.2    Fernández-Abalos, J.M.3    Díaz, M.4
  • 48
    • 84919396599 scopus 로고    scopus 로고
    • Phenotypic and genetic relationships between growth and feed intake curves and feed efficiency and amino acid requirements in the growing pig
    • Saintilan, R., Brossard, L., Vautier, B., Sellier, P., Bidanel, J., Van Milgen, J., et al. (2015). Phenotypic and genetic relationships between growth and feed intake curves and feed efficiency and amino acid requirements in the growing pig. Animal 9, 18-27. doi: 10.1017/S1751731114002171
    • (2015) Animal , vol.9 , pp. 18-27
    • Saintilan, R.1    Brossard, L.2    Vautier, B.3    Sellier, P.4    Bidanel, J.5    Van Milgen, J.6
  • 49
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., and Gordon, J. I. (2006). An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444, 1027-1031. doi: 10.1038/nature05414
    • (2006) Nature , vol.444 , pp. 1027-1031
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3    Magrini, V.4    Mardis, E.R.5    Gordon, J.I.6
  • 50
    • 84924094264 scopus 로고    scopus 로고
    • Application of a neutral community model to assess structuring of the human lung microbiome
    • Venkataraman, A., Bassis, C. M., Beck, J. M., Young, V. B., Curtis, J. L., Huffnagle, G. B., et al. (2015). Application of a neutral community model to assess structuring of the human lung microbiome. MBio 6:e02284-14. doi: 10.1128/mBio.02284-14
    • (2015) MBio , vol.6
    • Venkataraman, A.1    Bassis, C.M.2    Beck, J.M.3    Young, V.B.4    Curtis, J.L.5    Huffnagle, G.B.6
  • 51
    • 84966648810 scopus 로고    scopus 로고
    • Pigs that are divergent in feed efficiency, differ in intestinal enzyme and nutrient transporter gene expression, nutrient digestibility and microbial activity
    • Vigors, S., Sweeney, T., O'shea, C. J., Kelly, A. K., and O'doherty, J. (2016). Pigs that are divergent in feed efficiency, differ in intestinal enzyme and nutrient transporter gene expression, nutrient digestibility and microbial activity. Animal 10, 1848-1855. doi: 10.1017/S1751731116000847
    • (2016) Animal , vol.10 , pp. 1848-1855
    • Vigors, S.1    Sweeney, T.2    O'shea, C.J.3    Kelly, A.K.4    O'doherty, J.5
  • 52
    • 84876908605 scopus 로고    scopus 로고
    • The effects of supplementing varying molecular weights of chitooligosaccharide on performance, selected microbial populations and nutrient digestibility in the weaned pig
    • Walsh, A. M., Sweeney, T., Bahar, B., Flynn, B., and O'doherty, J. V. (2013). The effects of supplementing varying molecular weights of chitooligosaccharide on performance, selected microbial populations and nutrient digestibility in the weaned pig. Animal 7, 571-579. doi: 10.1017/S1751731112001759
    • (2013) Animal , vol.7 , pp. 571-579
    • Walsh, A.M.1    Sweeney, T.2    Bahar, B.3    Flynn, B.4    O'doherty, J.V.5
  • 53
    • 85020619038 scopus 로고    scopus 로고
    • Live Probiotic Lactobacillus johnsonii BS15 promotes growth performance and lowers fat deposition by improving lipid metabolism, intestinal development, and gut microflora in broilers
    • Wang, H., Ni, X., Qing, X., Zeng, D., Luo, M., Liu, L., et al. (2017). Live Probiotic Lactobacillus johnsonii BS15 promotes growth performance and lowers fat deposition by improving lipid metabolism, intestinal development, and gut microflora in broilers. Front. Microbiol. 8:1073. doi: 10.3389/fmicb.2017.01073
    • (2017) Front. Microbiol , vol.8 , pp. 1073
    • Wang, H.1    Ni, X.2    Qing, X.3    Zeng, D.4    Luo, M.5    Liu, L.6
  • 54
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267. doi: 10.1128/AEM.00062-07
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 55
    • 0026845981 scopus 로고
    • Growth and carcass characteristics of pigs selected for fast or slow gain in relation to feed intake and efficiency
    • Woltmann, M. D., Clutter, A. C., Buchanan, D. S., and Dolezal, H. G. (1992). Growth and carcass characteristics of pigs selected for fast or slow gain in relation to feed intake and efficiency. J. Anim. Sci. 70, 1049-1059. doi: 10.2527/1992.7041049x
    • (1992) J. Anim. Sci , vol.70 , pp. 1049-1059
    • Woltmann, M.D.1    Clutter, A.C.2    Buchanan, D.S.3    Dolezal, H.G.4
  • 56
    • 84973390147 scopus 로고    scopus 로고
    • Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness
    • Yang, H., Huang, X., Fang, S., Xin, W., Huang, L., and Chen, C. (2016). Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness. Sci. Rep. 6:27427. doi: 10.1038/srep27427
    • (2016) Sci. Rep , vol.6 , pp. 27427
    • Yang, H.1    Huang, X.2    Fang, S.3    Xin, W.4    Huang, L.5    Chen, C.6
  • 57
    • 77955902981 scopus 로고    scopus 로고
    • Ab initio gene identification in metagenomic sequences
    • Zhu, W., Lomsadze, A., and Borodovsky, M. (2010). Ab initio gene identification in metagenomic sequences. Nucleic Acids Res. 38:e132. doi: 10.1093/nar/gkq275
    • (2010) Nucleic Acids Res , vol.38
    • Zhu, W.1    Lomsadze, A.2    Borodovsky, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.