-
1
-
-
0036624537
-
Shotgun proteomics: tools for the analysis of complex biological systems
-
COI: 1:CAS:528:DC%2BD38XlvVSiu74%3D
-
Wu CC, MacCoss MJ. Shotgun proteomics: tools for the analysis of complex biological systems. Curr Opin Mol Ther. 2002;4(3):242–50.
-
(2002)
Curr Opin Mol Ther
, vol.4
, Issue.3
, pp. 242-250
-
-
Wu, C.C.1
MacCoss, M.J.2
-
2
-
-
84891802882
-
Maximizing peptide identification events in proteomic workflows using data-dependent acquisition (DDA)
-
COI: 1:CAS:528:DC%2BC2cXit12htg%3D%3D
-
Bateman NW, Goulding SP, Shulman NJ, Gadok AK, Szumlinski KK, MacCoss MJ, et al. Maximizing peptide identification events in proteomic workflows using data-dependent acquisition (DDA). Mol Cell Proteomics. 2014;13(1):329–38.
-
(2014)
Mol Cell Proteomics
, vol.13
, Issue.1
, pp. 329-338
-
-
Bateman, N.W.1
Goulding, S.P.2
Shulman, N.J.3
Gadok, A.K.4
Szumlinski, K.K.5
MacCoss, M.J.6
-
3
-
-
84981297901
-
Sharing and community curation of mass spectrometry data with global natural products social molecular networking
-
COI: 1:CAS:528:DC%2BC28XhtlaitLnE
-
Wang M, Carver JJ, Phelan VV, Sanchez LM, Garg N, Peng Y, et al. Sharing and community curation of mass spectrometry data with global natural products social molecular networking. Nat Biotech. 2016;34(8):828–37.
-
(2016)
Nat Biotech
, vol.34
, Issue.8
, pp. 828-837
-
-
Wang, M.1
Carver, J.J.2
Phelan, V.V.3
Sanchez, L.M.4
Garg, N.5
Peng, Y.6
-
4
-
-
84900862294
-
New kids on the block: novel informatics methods for natural product discovery
-
COI: 1:CAS:528:DC%2BC2cXotFekurk%3D
-
Hufsky F, Scheubert K, Bocker S. New kids on the block: novel informatics methods for natural product discovery. Nat Prod Rep. 2014;31(6):807–17.
-
(2014)
Nat Prod Rep
, vol.31
, Issue.6
, pp. 807-817
-
-
Hufsky, F.1
Scheubert, K.2
Bocker, S.3
-
5
-
-
84931428195
-
The potential of mass spectrometry imaging in plant metabolomics: a review
-
COI: 1:CAS:528:DC%2BC2MXhtVaqsbbE
-
Heyman HM, Dubery IA. The potential of mass spectrometry imaging in plant metabolomics: a review. Phytochem Rev. 2016;15(2):297–316.
-
(2016)
Phytochem Rev
, vol.15
, Issue.2
, pp. 297-316
-
-
Heyman, H.M.1
Dubery, I.A.2
-
6
-
-
84900848248
-
Mass spectrometry of natural products: current, emerging and future technologies
-
COI: 1:CAS:528:DC%2BC2cXotFCitbY%3D
-
Bouslimani A, Sanchez LM, Garg N, Dorrestein PC. Mass spectrometry of natural products: current, emerging and future technologies. Nat Prod Rep. 2014;31(6):718–29.
-
(2014)
Nat Prod Rep
, vol.31
, Issue.6
, pp. 718-729
-
-
Bouslimani, A.1
Sanchez, L.M.2
Garg, N.3
Dorrestein, P.C.4
-
7
-
-
84927513467
-
The importance of mass spectrometric dereplication in fungal secondary metabolite analysis
-
Nielsen KF, Larsen TO. The importance of mass spectrometric dereplication in fungal secondary metabolite analysis. Front Microbiol. 2015;6(71).
-
(2015)
Front Microbiol
, vol.6
, Issue.71
-
-
Nielsen, K.F.1
Larsen, T.O.2
-
8
-
-
77952302069
-
In silico fragmentation for computer assisted identification of metabolite mass spectra
-
Wolf S, Schmidt S, Müller-Hannemann M, Neumann S. In silico fragmentation for computer assisted identification of metabolite mass spectra. BMC Bioinform. 2010;11(1):148.
-
(2010)
BMC Bioinform
, vol.11
, Issue.1
, pp. 148
-
-
Wolf, S.1
Schmidt, S.2
Müller-Hannemann, M.3
Neumann, S.4
-
9
-
-
84861915827
-
XCMS online: a web-based platform to process untargeted metabolomic data
-
COI: 1:CAS:528:DC%2BC38XmtFWjsb0%3D
-
Tautenhahn R, Patti GJ, Rinehart D, Siuzdak G. XCMS online: a web-based platform to process untargeted metabolomic data. Anal Chem. 2012;84(11):5035–9.
-
(2012)
Anal Chem
, vol.84
, Issue.11
, pp. 5035-5039
-
-
Tautenhahn, R.1
Patti, G.J.2
Rinehart, D.3
Siuzdak, G.4
-
10
-
-
84855402302
-
CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets
-
COI: 1:CAS:528:DC%2BC3MXhsFansLvL
-
Kuhl C, Tautenhahn R, Böttcher C, Larson TR, Neumann S. CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets. Anal Chem. 2012;84(1):283–9.
-
(2012)
Anal Chem
, vol.84
, Issue.1
, pp. 283-289
-
-
Kuhl, C.1
Tautenhahn, R.2
Böttcher, C.3
Larson, T.R.4
Neumann, S.5
-
11
-
-
34247163207
-
Seven golden rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry
-
Kind T, Fiehn O. Seven golden rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry. BMC Bioinform. 2007;8:105.
-
(2007)
BMC Bioinform
, vol.8
, pp. 105
-
-
Kind, T.1
Fiehn, O.2
-
12
-
-
84944201928
-
Searching molecular structure databases with tandem mass spectra using CSI:FingerID
-
Dührkop K, Shen H, Meusel M, Rousu J, Böcker S. Searching molecular structure databases with tandem mass spectra using CSI:FingerID. Proc Natl Acad Sci. 2015;112(41):12580–5.
-
(2015)
Proc Natl Acad Sci
, vol.112
, Issue.41
, pp. 12580-12585
-
-
Dührkop, K.1
Shen, H.2
Meusel, M.3
Rousu, J.4
Böcker, S.5
-
13
-
-
84936804007
-
Combining stable isotope labeling and molecular networking for biosynthetic pathway characterization
-
COI: 1:CAS:528:DC%2BC2MXptF2msLk%3D
-
Klitgaard A, Nielsen JB, Frandsen RJN, Andersen MR, Nielsen KF. Combining stable isotope labeling and molecular networking for biosynthetic pathway characterization. Anal Chem. 2015;87(13):6520–6.
-
(2015)
Anal Chem
, vol.87
, Issue.13
, pp. 6520-6526
-
-
Klitgaard, A.1
Nielsen, J.B.2
Frandsen, R.J.N.3
Andersen, M.R.4
Nielsen, K.F.5
-
14
-
-
84862999012
-
Mass spectral molecular networking of living microbial colonies
-
COI: 1:CAS:528:DC%2BC38XhtFWitrfK
-
Watrous J, Roach P, Alexandrov T, Heath BS, Yang JY, Kersten RD, et al. Mass spectral molecular networking of living microbial colonies. Proc Natl Acad Sci. 2012;109(26):E1743–E52.
-
(2012)
Proc Natl Acad Sci
, vol.109
, Issue.26
, pp. E1743
-
-
Watrous, J.1
Roach, P.2
Alexandrov, T.3
Heath, B.S.4
Yang, J.Y.5
Kersten, R.D.6
-
15
-
-
84978148087
-
Dissecting bottromycin biosynthesis using comparative untargeted metabolomics
-
COI: 1:CAS:528:DC%2BC28XhtFSqurbI
-
Crone WJK, Vior NM, Santos-Aberturas J, Schmitz LG, Leeper FJ, Truman AW. Dissecting bottromycin biosynthesis using comparative untargeted metabolomics. Angew Chem Int Ed. 2016;55(33):9639–43.
-
(2016)
Angew Chem Int Ed
, vol.55
, Issue.33
, pp. 9639-9643
-
-
Crone, W.J.K.1
Vior, N.M.2
Santos-Aberturas, J.3
Schmitz, L.G.4
Leeper, F.J.5
Truman, A.W.6
-
16
-
-
84885071517
-
Molecular networking as a dereplication strategy
-
COI: 1:CAS:528:DC%2BC3sXhsVaru7jM
-
Yang JY, Sanchez LM, Rath CM, Liu X, Boudreau PD, Bruns N, et al. Molecular networking as a dereplication strategy. J Nat Prod. 2013;76(9):1686–99.
-
(2013)
J Nat Prod
, vol.76
, Issue.9
, pp. 1686-1699
-
-
Yang, J.Y.1
Sanchez, L.M.2
Rath, C.M.3
Liu, X.4
Boudreau, P.D.5
Bruns, N.6
-
17
-
-
54949129419
-
Proteo Wizard: open source software for rapid proteomics tools development
-
COI: 1:CAS:528:DC%2BD1cXht12gtb3K
-
Kessner D, Chambers M, Burke R, Agus D, Mallick P. Proteo Wizard: open source software for rapid proteomics tools development. Bioinformatics. 2008;24(21):2534–6.
-
(2008)
Bioinformatics
, vol.24
, Issue.21
, pp. 2534-2536
-
-
Kessner, D.1
Chambers, M.2
Burke, R.3
Agus, D.4
Mallick, P.5
-
18
-
-
38649109810
-
Clustering millions of tandem mass spectra
-
COI: 1:CAS:528:DC%2BD2sXhsVWgur%2FN
-
Frank AM, Bandeira N, Shen Z, Tanner S, Briggs SP, Smith RD, et al. Clustering millions of tandem mass spectra. J Proteome Res. 2008;7(1):113–22.
-
(2008)
J Proteome Res
, vol.7
, Issue.1
, pp. 113-122
-
-
Frank, A.M.1
Bandeira, N.2
Shen, Z.3
Tanner, S.4
Briggs, S.P.5
Smith, R.D.6
-
19
-
-
84930216386
-
Antiviral activity of flexibilane and tigliane diterpenoids from Stillingia lineata
-
COI: 1:CAS:528:DC%2BC2MXnvV2lsLc%3D
-
Olivon F, Palenzuela H, Girard-Valenciennes E, Neyts J, Pannecouque C, Roussi F, et al. Antiviral activity of flexibilane and tigliane diterpenoids from Stillingia lineata. J Nat Prod. 2015;78(5):1119–28.
-
(2015)
J Nat Prod
, vol.78
, Issue.5
, pp. 1119-1128
-
-
Olivon, F.1
Palenzuela, H.2
Girard-Valenciennes, E.3
Neyts, J.4
Pannecouque, C.5
Roussi, F.6
-
20
-
-
38349164409
-
Computing topological parameters of biological networks
-
COI: 1:CAS:528:DC%2BD1cXptlWntw%3D%3D
-
Assenov Y, Ramírez F, Schelhorn S-E, Lengauer T, Albrecht M. Computing topological parameters of biological networks. Bioinformatics. 2008;24(2):282–4.
-
(2008)
Bioinformatics
, vol.24
, Issue.2
, pp. 282-284
-
-
Assenov, Y.1
Ramírez, F.2
Schelhorn, S.-E.3
Lengauer, T.4
Albrecht, M.5
-
21
-
-
85026646297
-
MZmine 2 Data-Preprocessing To Enhance Molecular Networking Reliability
-
Olivon F, Grelier G, Roussi F, Litaudon M, Touboul D
-
Olivon F, Grelier G, Roussi F, Litaudon M, Touboul D. MZmine 2 Data-Preprocessing To Enhance Molecular Networking Reliability. Anal Chem. 2017; asap, doi:10.1021/acs.analchem.7b01563
-
(2017)
Anal Chem.
-
-
-
22
-
-
77954772536
-
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
-
Pluskal T, Castillo S, Villar-Briones A, Orešič M. MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinf. 2010;11(1):395–406
-
(2010)
BMC Bioinf
, vol.11
, Issue.1
, pp. 395-406
-
-
Pluskal, T.1
Castillo, S.2
Villar-Briones, A.3
Orešič, M.4
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