-
1
-
-
84920389030
-
Visualization of specific DNA sequences in living mouse embryonic stem cells with a programmable fluorescent CRISPR/Cas system
-
Anton, T., Bultmann, S., Leonhardt, H. and Markaki, Y. (2014) Visualization of specific DNA sequences in living mouse embryonic stem cells with a programmable fluorescent CRISPR/Cas system. Nucleus, 5, 163–172.
-
(2014)
Nucleus
, vol.5
, pp. 163-172
-
-
Anton, T.1
Bultmann, S.2
Leonhardt, H.3
Markaki, Y.4
-
2
-
-
84885353478
-
Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system
-
Belhaj, K., Chaparro-Garcia, A., Kamoun, S. and Nekrasov, V. (2013) Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system. Plant Methods, 9, 39.
-
(2013)
Plant Methods
, vol.9
, pp. 39
-
-
Belhaj, K.1
Chaparro-Garcia, A.2
Kamoun, S.3
Nekrasov, V.4
-
3
-
-
72149110399
-
Breaking the code of DNA binding specificity of TAL-type III effectors
-
Boch, J., Scholze, H., Schornack, S., Landgraf, A., Hahn, S., Kay, S., Lahaye, T., Nickstadt, A. and Bonas, U. (2009) Breaking the code of DNA binding specificity of TAL-type III effectors. Science, 326, 1509–1512.
-
(2009)
Science
, vol.326
, pp. 1509-1512
-
-
Boch, J.1
Scholze, H.2
Schornack, S.3
Landgraf, A.4
Hahn, S.5
Kay, S.6
Lahaye, T.7
Nickstadt, A.8
Bonas, U.9
-
4
-
-
84955290042
-
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
-
Boettiger, A.N., Bintu, B., Moffitt, J.R., Wang, S., Beliveau, B.J., Fudenberg, G., Imakaev, M., Mirny, L.A., Wu, C.T. and Zhuang, X. (2016) Super-resolution imaging reveals distinct chromatin folding for different epigenetic states. Nature, 529, 418–422.
-
(2016)
Nature
, vol.529
, pp. 418-422
-
-
Boettiger, A.N.1
Bintu, B.2
Moffitt, J.R.3
Wang, S.4
Beliveau, B.J.5
Fudenberg, G.6
Imakaev, M.7
Mirny, L.A.8
Wu, C.T.9
Zhuang, X.10
-
5
-
-
84991585399
-
Organization and function of the 3D genome
-
Bonev, B. and Cavalli, G. (2016) Organization and function of the 3D genome. Nat. Rev. Genet., 17, 661–678.
-
(2016)
Nat. Rev. Genet.
, vol.17
, pp. 661-678
-
-
Bonev, B.1
Cavalli, G.2
-
6
-
-
84894063115
-
Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system
-
Chen, B., Gilbert, L.A., Cimini, B.A. et al. (2013) Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system. Cell, 155, 1479–1491.
-
(2013)
Cell
, vol.155
, pp. 1479-1491
-
-
Chen, B.1
Gilbert, L.A.2
Cimini, B.A.3
-
7
-
-
84978434575
-
Imaging specific genomic DNA in living cells
-
Chen, B., Guan, J. and Huang, B. (2016a) Imaging specific genomic DNA in living cells. Annu. Rev. Biophys. 45, 1–23.
-
(2016)
Annu. Rev. Biophys.
, vol.45
, pp. 1-23
-
-
Chen, B.1
Guan, J.2
Huang, B.3
-
8
-
-
84966359029
-
Expanding the CRISPR imaging toolset with Staphylococcus aureus Cas9 for simultaneous imaging of multiple genomic loci
-
Chen, B., Hu, J., Almeida, R., Liu, H., Balakrishnan, S., Covill-Cooke, C., Lim, W.A. and Huang, B. (2016b) Expanding the CRISPR imaging toolset with Staphylococcus aureus Cas9 for simultaneous imaging of multiple genomic loci. Nucleic Acids Res. 44, e75.
-
(2016)
Nucleic Acids Res.
, vol.44
-
-
Chen, B.1
Hu, J.2
Almeida, R.3
Liu, H.4
Balakrishnan, S.5
Covill-Cooke, C.6
Lim, W.A.7
Huang, B.8
-
9
-
-
0033169026
-
Silencing at Drosophila telomeres: nuclear organization and chromatin structure play critical roles
-
Cryderman, D.E., Morris, E.J., Biessmann, H., Elgin, S.C.R. and Wallrath, L.L. (1999) Silencing at Drosophila telomeres: nuclear organization and chromatin structure play critical roles. EMBO J. 18, 3724–3735.
-
(1999)
EMBO J.
, vol.18
, pp. 3724-3735
-
-
Cryderman, D.E.1
Morris, E.J.2
Biessmann, H.3
Elgin, S.C.R.4
Wallrath, L.L.5
-
10
-
-
38449104378
-
Estimation of nuclear DNA content in plants using flow cytometry
-
Dolezel, J., Greilhuber, J. and Suda, J. (2007) Estimation of nuclear DNA content in plants using flow cytometry. Nat. Protoc., 2, 2233–2244.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2233-2244
-
-
Dolezel, J.1
Greilhuber, J.2
Suda, J.3
-
11
-
-
76449087123
-
AtTRB1, a telomeric DNA-binding protein from Arabidopsis, is concentrated in the nucleolus and shows highly dynamic association with chromatin
-
Dvorackova, M., Rossignol, P., Shaw, P.J., Koroleva, O.A., Doonan, J.H. and Fajkus, J. (2010) AtTRB1, a telomeric DNA-binding protein from Arabidopsis, is concentrated in the nucleolus and shows highly dynamic association with chromatin. Plant J. 61, 637–649.
-
(2010)
Plant J.
, vol.61
, pp. 637-649
-
-
Dvorackova, M.1
Rossignol, P.2
Shaw, P.J.3
Koroleva, O.A.4
Doonan, J.H.5
Fajkus, J.6
-
12
-
-
0029007358
-
Organization of telomeric and subtelomeric chromatin in the higher-plant Nicotiana tabacum
-
Fajkus, J., Kovarik, A., Kralovics, R. and Bezdek, M. (1995) Organization of telomeric and subtelomeric chromatin in the higher-plant Nicotiana tabacum. Mol. Gen. Genet. 247, 633–638.
-
(1995)
Mol. Gen. Genet.
, vol.247
, pp. 633-638
-
-
Fajkus, J.1
Kovarik, A.2
Kralovics, R.3
Bezdek, M.4
-
13
-
-
84904068340
-
Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana
-
Fauser, F., Schiml, S. and Puchta, H. (2014) Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. Plant J. 79, 348–359.
-
(2014)
Plant J.
, vol.79
, pp. 348-359
-
-
Fauser, F.1
Schiml, S.2
Puchta, H.3
-
14
-
-
84994410891
-
Visualization of specific repetitive genomic sequences with fluorescent TALEs in Arabidopsis thaliana
-
Fujimoto, S., Sugano, S.S., Kuwata, K., Osakabe, K. and Matsunaga, S. (2016) Visualization of specific repetitive genomic sequences with fluorescent TALEs in Arabidopsis thaliana. J. Exp. Bot. 67, 6101–6110.
-
(2016)
J. Exp. Bot.
, vol.67
, pp. 6101-6110
-
-
Fujimoto, S.1
Sugano, S.S.2
Kuwata, K.3
Osakabe, K.4
Matsunaga, S.5
-
15
-
-
0025201982
-
Position effect at Saccharomyces cerevisiae telomeres – reversible repression of Pol-II transcription
-
Gottschling, D.E., Aparicio, O.M., Billington, B.L. and Zakian, V.A. (1990) Position effect at Saccharomyces cerevisiae telomeres – reversible repression of Pol-II transcription. Cell, 63, 751–762.
-
(1990)
Cell
, vol.63
, pp. 751-762
-
-
Gottschling, D.E.1
Aparicio, O.M.2
Billington, B.L.3
Zakian, V.A.4
-
16
-
-
84975553202
-
Closed-form solution of absolute orientation using unit quaternions
-
Horn, B.K.P. (1987) Closed-form solution of absolute orientation using unit quaternions. J. Opt. Soc. Am. A, 4, 629–642.
-
(1987)
J. Opt. Soc. Am. A
, vol.4
, pp. 629-642
-
-
Horn, B.K.P.1
-
17
-
-
84949089781
-
Preferential recruitment of the maternal centromere-specific histone H3 (CENH3) in oat (Avena sativa L.) x pearl millet (Pennisetum glaucum L.) hybrid embryos
-
Ishii, T., Sunamura, N., Matsumoto, A., Eltayeb, A.E. and Tsujimoto, H. (2015) Preferential recruitment of the maternal centromere-specific histone H3 (CENH3) in oat (Avena sativa L.) x pearl millet (Pennisetum glaucum L.) hybrid embryos. Chromosome Res. 23, 709–718.
-
(2015)
Chromosome Res.
, vol.23
, pp. 709-718
-
-
Ishii, T.1
Sunamura, N.2
Matsumoto, A.3
Eltayeb, A.E.4
Tsujimoto, H.5
-
18
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J.A. and Charpentier, E. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science, 337, 816–821.
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
19
-
-
0035237695
-
Detection of chromosomes tagged with green fluorescent protein in live Arabidopsis thaliana plants
-
research 0045.1-0045.10
-
Kato, N. and Lam, E. (2001) Detection of chromosomes tagged with green fluorescent protein in live Arabidopsis thaliana plants. Genome Biol. 2, research 0045.1-0045.10
-
(2001)
Genome Biol.
, vol.2
-
-
Kato, N.1
Lam, E.2
-
20
-
-
84984919478
-
Chromatin-associated transcripts of tandemly repetitive DNA sequences revealed by RNA-FISH
-
Koo, D.H., Zhao, H.N. and Jiang, J.M. (2016) Chromatin-associated transcripts of tandemly repetitive DNA sequences revealed by RNA-FISH. Chromosome Res., 24, 467–480.
-
(2016)
Chromosome Res.
, vol.24
, pp. 467-480
-
-
Koo, D.H.1
Zhao, H.N.2
Jiang, J.M.3
-
21
-
-
0343517470
-
Influence of cell fixation on chromatin topography
-
Kozubek, S., Lukasova, E., Amrichova, J., Kozubek, M., Liskova, A. and Slotova, J. (2000) Influence of cell fixation on chromatin topography. Anal. Biochem., 282, 29–38.
-
(2000)
Anal. Biochem.
, vol.282
, pp. 29-38
-
-
Kozubek, S.1
Lukasova, E.2
Amrichova, J.3
Kozubek, M.4
Liskova, A.5
Slotova, J.6
-
22
-
-
84960474979
-
Human cytomegalovirus nuclear egress proteins ectopically expressed in the heterologous environment of plant cells are strictly targeted to the nuclear envelope
-
Lamm, C.E., Link, K., Wagner, S., Milbradt, J., Marschall, M. and Sonnewald, U. (2016) Human cytomegalovirus nuclear egress proteins ectopically expressed in the heterologous environment of plant cells are strictly targeted to the nuclear envelope. Viruses, 8, 73.
-
(2016)
Viruses
, vol.8
, pp. 73
-
-
Lamm, C.E.1
Link, K.2
Wagner, S.3
Milbradt, J.4
Marschall, M.5
Sonnewald, U.6
-
23
-
-
34548809113
-
Live cell imaging of repetitive DNA sequences via GFP-tagged polydactyl zinc finger proteins
-
Lindhout, B.I., Fransz, P., Tessadori, F., Meckel, T., Hooykaas, P.J. and van der Zaal, B.J. (2007) Live cell imaging of repetitive DNA sequences via GFP-tagged polydactyl zinc finger proteins. Nucleic Acids Res., 35, e107.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Lindhout, B.I.1
Fransz, P.2
Tessadori, F.3
Meckel, T.4
Hooykaas, P.J.5
van der Zaal, B.J.6
-
24
-
-
84891363606
-
Visualization of repetitive DNA sequences in human chromosomes with transcription activator-like effectors
-
Ma, H., Reyes-Gutierrez, P. and Pederson, T. (2013) Visualization of repetitive DNA sequences in human chromosomes with transcription activator-like effectors. Proc. Natl. Acad. Sci. USA, 110, 21048–21053.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 21048-21053
-
-
Ma, H.1
Reyes-Gutierrez, P.2
Pederson, T.3
-
25
-
-
84924347318
-
Multicolor CRISPR labeling of chromosomal loci in human cells
-
Ma, H., Naseri, A., Reyes-Gutierrez, P., Wolfe, S.A., Zhang, S. and Pederson, T. (2015) Multicolor CRISPR labeling of chromosomal loci in human cells. Proc. Natl. Acad. Sci. USA, 112, 3002–3007.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 3002-3007
-
-
Ma, H.1
Naseri, A.2
Reyes-Gutierrez, P.3
Wolfe, S.A.4
Zhang, S.5
Pederson, T.6
-
26
-
-
84990862095
-
CRISPR–Cas9 nuclear dynamics and target recognition in living cells
-
Ma, H., Tu, L.C., Naseri, A., Huisman, M., Zhang, S., Grunwald, D. and Pederson, T. (2016) CRISPR–Cas9 nuclear dynamics and target recognition in living cells. J. Cell Biol., 214, 529–537.
-
(2016)
J. Cell Biol.
, vol.214
, pp. 529-537
-
-
Ma, H.1
Tu, L.C.2
Naseri, A.3
Huisman, M.4
Zhang, S.5
Grunwald, D.6
Pederson, T.7
-
27
-
-
0027965291
-
Telomere-associated chromosome breakage in fission yeast results in variegated expression of adjacent genes
-
Nimmo, E.R., Cranston, G. and Allshire, R.C. (1994) Telomere-associated chromosome breakage in fission yeast results in variegated expression of adjacent genes. EMBO J., 13, 3801–3811.
-
(1994)
EMBO J.
, vol.13
, pp. 3801-3811
-
-
Nimmo, E.R.1
Cranston, G.2
Allshire, R.C.3
-
28
-
-
85015174876
-
From classical mutagenesis to nuclease-based breeding – directing natural DNA repair for a natural end-product
-
Pacher, M. and Puchta, H. (2017) From classical mutagenesis to nuclease-based breeding – directing natural DNA repair for a natural end-product. Plant J. 90, 819–833.
-
(2017)
Plant J.
, vol.90
, pp. 819-833
-
-
Pacher, M.1
Puchta, H.2
-
29
-
-
84944474447
-
Plant-based vaccine antigen production
-
Phan, H.T. and Conrad, U. (2016) Plant-based vaccine antigen production. Methods Mol. Biol., 1349, 35–47.
-
(2016)
Methods Mol. Biol.
, vol.1349
, pp. 35-47
-
-
Phan, H.T.1
Conrad, U.2
-
30
-
-
84928212884
-
RNA-guided transcriptional regulation in planta via synthetic dCas9-based transcription factors
-
Piatek, A., Ali, Z., Baazim, H., Li, L., Abulfaraj, A., Al-Shareef, S., Aouida, M. and Mahfouz, M.M. (2015) RNA-guided transcriptional regulation in planta via synthetic dCas9-based transcription factors. Plant Biotechnol. J., 13, 578–589.
-
(2015)
Plant Biotechnol. J.
, vol.13
, pp. 578-589
-
-
Piatek, A.1
Ali, Z.2
Baazim, H.3
Li, L.4
Abulfaraj, A.5
Al-Shareef, S.6
Aouida, M.7
Mahfouz, M.M.8
-
31
-
-
84999711685
-
Applying CRISPR/Cas for genome engineering in plants: the best is yet to come
-
Puchta, H. (2016a) Applying CRISPR/Cas for genome engineering in plants: the best is yet to come. Curr. Opin. Plant Biol., 36, 1–8.
-
(2016)
Curr. Opin. Plant Biol.
, vol.36
, pp. 1-8
-
-
Puchta, H.1
-
32
-
-
85027953332
-
Using CRISPR/Cas in three dimensions: towards synthetic plant genomes, transcriptomes and epigenomes
-
Puchta, H. (2016b) Using CRISPR/Cas in three dimensions: towards synthetic plant genomes, transcriptomes and epigenomes. Plant J. 87, 5–15.
-
(2016)
Plant J.
, vol.87
, pp. 5-15
-
-
Puchta, H.1
-
33
-
-
84874687019
-
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
-
Qi, L.S., Larson, M.H., Gilbert, L.A., Doudna, J.A., Weissman, J.S., Arkin, A.P. and Lim, W.A. (2013) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell, 152, 1173–1183.
-
(2013)
Cell
, vol.152
, pp. 1173-1183
-
-
Qi, L.S.1
Larson, M.H.2
Gilbert, L.A.3
Doudna, J.A.4
Weissman, J.S.5
Arkin, A.P.6
Lim, W.A.7
-
34
-
-
85015290812
-
Live cell imaging of low- and non-repetitive chromosome loci using CRISPR–Cas9
-
Qin, P., Parlak, M., Kuscu, C., Bandaria, J., Mir, M., Szlachta, K., Singh, R., Darzacq, X., Yildiz, A. and Adli, M. (2017) Live cell imaging of low- and non-repetitive chromosome loci using CRISPR–Cas9. Nat. Commun., 8, 14725.
-
(2017)
Nat. Commun.
, vol.8
, pp. 14725
-
-
Qin, P.1
Parlak, M.2
Kuscu, C.3
Bandaria, J.4
Mir, M.5
Szlachta, K.6
Singh, R.7
Darzacq, X.8
Yildiz, A.9
Adli, M.10
-
35
-
-
0035057411
-
Chiasma formation in Arabidopsis thaliana accession Wassileskija and in two meiotic mutants
-
Sanchez Moran, E., Armstrong, S.J., Santos, J.L., Franklin, F.C. and Jones, G.H. (2001) Chiasma formation in Arabidopsis thaliana accession Wassileskija and in two meiotic mutants. Chromosome Res. 9, 121–128.
-
(2001)
Chromosome Res.
, vol.9
, pp. 121-128
-
-
Sanchez Moran, E.1
Armstrong, S.J.2
Santos, J.L.3
Franklin, F.C.4
Jones, G.H.5
-
36
-
-
84896724421
-
Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase
-
Schrumpfova, P.P., Vychodilova, I., Dvorackova, M., Majerska, J., Dokladal, L., Schorova, S. and Fajkus, J. (2014) Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J. 77, 770–781.
-
(2014)
Plant J.
, vol.77
, pp. 770-781
-
-
Schrumpfova, P.P.1
Vychodilova, I.2
Dvorackova, M.3
Majerska, J.4
Dokladal, L.5
Schorova, S.6
Fajkus, J.7
-
37
-
-
84976493124
-
Telomere- and telomerase-associated proteins and their functions in the plant cell
-
Schrumpfova, P.P., Schorova, S. and Fajkus, J. (2016) Telomere- and telomerase-associated proteins and their functions in the plant cell. Front. Plant Sci. 7, 851.
-
(2016)
Front. Plant Sci.
, vol.7
, pp. 851
-
-
Schrumpfova, P.P.1
Schorova, S.2
Fajkus, J.3
-
38
-
-
84928343620
-
Chromatin associations in Arabidopsis interphase nuclei
-
Schubert, V., Rudnik, R. and Schubert, I. (2014) Chromatin associations in Arabidopsis interphase nuclei. Front. Genet. 5, 389.
-
(2014)
Front. Genet.
, vol.5
, pp. 389
-
-
Schubert, V.1
Rudnik, R.2
Schubert, I.3
-
39
-
-
84969916200
-
Long-term dual-color tracking of genomic loci by modified sgRNAs of the CRISPR/Cas9 system
-
Shao, S., Zhang, W., Hu, H., Xue, B., Qin, J., Sun, C., Sun, Y., Wei, W. and Sun, Y. (2016) Long-term dual-color tracking of genomic loci by modified sgRNAs of the CRISPR/Cas9 system. Nucleic Acids Res., 44, e86.
-
(2016)
Nucleic Acids Res.
, vol.44
-
-
Shao, S.1
Zhang, W.2
Hu, H.3
Xue, B.4
Qin, J.5
Sun, C.6
Sun, Y.7
Wei, W.8
Sun, Y.9
-
40
-
-
84961350912
-
Highly efficient heritable plant genome engineering using Cas9 orthologues from Streptococcus thermophilus and Staphylococcus aureus
-
Steinert, J., Schiml, S., Fauser, F. and Puchta, H. (2015) Highly efficient heritable plant genome engineering using Cas9 orthologues from Streptococcus thermophilus and Staphylococcus aureus. Plant J. 84, 1295–1305.
-
(2015)
Plant J.
, vol.84
, pp. 1295-1305
-
-
Steinert, J.1
Schiml, S.2
Fauser, F.3
Puchta, H.4
-
41
-
-
84975678715
-
Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR–Cas system
-
Zetsche, B., Gootenberg, J.S., Abudayyeh, O.O. et al. (2015) Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR–Cas system. Cell, 163, 759–771.
-
(2015)
Cell
, vol.163
, pp. 759-771
-
-
Zetsche, B.1
Gootenberg, J.S.2
Abudayyeh, O.O.3
-
42
-
-
85010867810
-
Painting a specific chromosome with CRISPR/Cas9 for live-cell imaging
-
Zhou, Y., Wang, P., Tian, F., Gao, G., Huang, L., Wei, W. and Xie, X.S. (2017) Painting a specific chromosome with CRISPR/Cas9 for live-cell imaging. Cell Res., 27, 298–301.
-
(2017)
Cell Res.
, vol.27
, pp. 298-301
-
-
Zhou, Y.1
Wang, P.2
Tian, F.3
Gao, G.4
Huang, L.5
Wei, W.6
Xie, X.S.7
|