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Volumn 44, Issue 8, 2016, Pages e75-

Expanding the CRISPR imaging toolset with Staphylococcus aureus Cas9 for simultaneous imaging of multiple genomic loci

Author keywords

[No Author keywords available]

Indexed keywords

CAS9 PROTEIN; CRISPR ASSOCIATED PROTEIN; DNA 5S; RNA; SINGLE GUIDE RNA; UNCLASSIFIED DRUG; DNA BINDING PROTEIN;

EID: 84966359029     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv1533     Document Type: Article
Times cited : (145)

References (71)
  • 4
    • 84874624936 scopus 로고    scopus 로고
    • Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease
    • Cho,S.W., Kim,S., Kim,J.M. and Kim,J.S. (2013) Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat. Biotechnol., 31, 230-232.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 230-232
    • Cho, S.W.1    Kim, S.2    Kim, J.M.3    Kim, J.S.4
  • 5
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • Jiang,W., Bikard,D., Cox,D., Zhang,F. and Marraffini,L.A. (2013) RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat. Biotechnol., 31, 233-239.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 8
    • 84877707375 scopus 로고    scopus 로고
    • One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering
    • Wang,H., Yang,H., Shivalila,C.S., Dawlaty,M.M., Cheng,A.W., Zhang,F. and Jaenisch,R. (2013) One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell, 153, 910-918.
    • (2013) Cell , vol.153 , pp. 910-918
    • Wang, H.1    Yang, H.2    Shivalila, C.S.3    Dawlaty, M.M.4    Cheng, A.W.5    Zhang, F.6    Jaenisch, R.7
  • 9
    • 84884856342 scopus 로고    scopus 로고
    • Cas9 as a versatile tool for engineering biology
    • Mali,P., Esvelt,K.M. and Church,G.M. (2013) Cas9 as a versatile tool for engineering biology. Nat. Methods, 10, 957-963.
    • (2013) Nat. Methods , vol.10 , pp. 957-963
    • Mali, P.1    Esvelt, K.M.2    Church, G.M.3
  • 10
    • 84900314611 scopus 로고    scopus 로고
    • CRISPR-Cas systems for editing, regulating and targeting genomes
    • Sander,J.D. and Joung,J.K. (2014) CRISPR-Cas systems for editing, regulating and targeting genomes. Nat. Biotechnol., 32, 347-355.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 347-355
    • Sander, J.D.1    Joung, J.K.2
  • 11
    • 84902096048 scopus 로고    scopus 로고
    • Development and applications of CRISPR-Cas9 for genome engineering
    • Hsu,P.D., Lander,E.S. and Zhang,F. (2014) Development and applications of CRISPR-Cas9 for genome engineering. Cell, 157, 1262-1278.
    • (2014) Cell , vol.157 , pp. 1262-1278
    • Hsu, P.D.1    Lander, E.S.2    Zhang, F.3
  • 12
    • 84913594397 scopus 로고    scopus 로고
    • Genome editing. The new frontier of genome engineering with CRISPR-Cas9
    • Doudna,J.A. and Charpentier,E. (2014) Genome editing. The new frontier of genome engineering with CRISPR-Cas9. Science, 346, 1258096.
    • (2014) Science , vol.346
    • Doudna, J.A.1    Charpentier, E.2
  • 13
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek,M., Chylinski,K., Fonfara,I., Hauer,M., Doudna,J.A. and Charpentier,E. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science, 337, 816-821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 17
    • 84933574487 scopus 로고    scopus 로고
    • STRUCTURAL BIOLOGY. A Cas9-guide RNA complex preorganized for target DNA recognition
    • Jiang,F., Zhou,K., Ma,L., Gressel,S. and Doudna,J.A. (2015) STRUCTURAL BIOLOGY. A Cas9-guide RNA complex preorganized for target DNA recognition. Science, 348, 1477-1481.
    • (2015) Science , vol.348 , pp. 1477-1481
    • Jiang, F.1    Zhou, K.2    Ma, L.3    Gressel, S.4    Doudna, J.A.5
  • 20
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica,F.J., Diez-Villasenor,C., Garcia-Martinez,J. and Almendros,C. (2009) Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology, 155, 733-740.
    • (2009) Microbiology , vol.155 , pp. 733-740
    • Mojica, F.J.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Almendros, C.4
  • 21
    • 84866859751 scopus 로고    scopus 로고
    • Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
    • Gasiunas,G., Barrangou,R., Horvath,P. and Siksnys,V. (2012) Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc. Natl. Acad. Sci. U.S.A., 109, E2579-E2586.
    • (2012) Proc. Natl. Acad. Sci. U.S.A. , vol.109 , pp. E2579-E2586
    • Gasiunas, G.1    Barrangou, R.2    Horvath, P.3    Siksnys, V.4
  • 22
    • 84895871173 scopus 로고    scopus 로고
    • DNA interrogation by the CRISPR RNA-guided endonuclease Cas9
    • Sternberg,S.H., Redding,S., Jinek,M., Greene,E.C. and Doudna,J.A. (2014) DNA interrogation by the CRISPR RNA-guided endonuclease Cas9. Nature, 507, 62-67.
    • (2014) Nature , vol.507 , pp. 62-67
    • Sternberg, S.H.1    Redding, S.2    Jinek, M.3    Greene, E.C.4    Doudna, J.A.5
  • 23
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
    • Qi,L.S., Larson,M.H., Gilbert,L.A., Doudna,J.A., Weissman,J.S., Arkin,A.P. and Lim,W.A. (2013) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell, 152, 1173-1183.
    • (2013) Cell , vol.152 , pp. 1173-1183
    • Qi, L.S.1    Larson, M.H.2    Gilbert, L.A.3    Doudna, J.A.4    Weissman, J.S.5    Arkin, A.P.6    Lim, W.A.7
  • 24
    • 84882986957 scopus 로고    scopus 로고
    • Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
    • Bikard,D., Jiang,W., Samai,P., Hochschild,A., Zhang,F. and Marraffini,L.A. (2013) Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Res., 41, 7429-7437.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 7429-7437
    • Bikard, D.1    Jiang, W.2    Samai, P.3    Hochschild, A.4    Zhang, F.5    Marraffini, L.A.6
  • 28
    • 84884160273 scopus 로고    scopus 로고
    • CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
    • Mali,P., Aach,J., Stranges,P.B., Esvelt,K.M., Moosburner,M., Kosuri,S., Yang,L. and Church,G.M. (2013) CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat. Biotechnol., 31, 833-838.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 833-838
    • Mali, P.1    Aach, J.2    Stranges, P.B.3    Esvelt, K.M.4    Moosburner, M.5    Kosuri, S.6    Yang, L.7    Church, G.M.8
  • 31
    • 84920389030 scopus 로고    scopus 로고
    • Visualization of specific DNA sequences in living mouse embryonic stem cells with a programmable fluorescent CRISPR/Cas system
    • Anton,T., Bultmann,S., Leonhardt,H. and Markaki,Y. (2014) Visualization of specific DNA sequences in living mouse embryonic stem cells with a programmable fluorescent CRISPR/Cas system. Nucleus, 5, 163-172.
    • (2014) Nucleus , vol.5 , pp. 163-172
    • Anton, T.1    Bultmann, S.2    Leonhardt, H.3    Markaki, Y.4
  • 33
    • 84942845731 scopus 로고    scopus 로고
    • CASFISH: CRISPR/Cas9-mediated in situ labelling of genomic loci in fixed cells
    • Deng,W., Shi,X., Tjian,R., Lionnet,T. and Singer,R.H. (2015) CASFISH: CRISPR/Cas9-mediated in situ labelling of genomic loci in fixed cells. Proc. Natl. Acad. Sci. U.S.A., 112, 11870-11875.
    • (2015) Proc. Natl. Acad. Sci. U.S.A. , vol.112 , pp. 11870-11875
    • Deng, W.1    Shi, X.2    Tjian, R.3    Lionnet, T.4    Singer, R.H.5
  • 34
    • 84883799821 scopus 로고    scopus 로고
    • Efficient isolation of specific genomic regions and identification of associated proteins by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR
    • Fujita,T. and Fujii,H. (2013) Efficient isolation of specific genomic regions and identification of associated proteins by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR. Biochem. Biophys. Res. Commun., 439, 132-136.
    • (2013) Biochem. Biophys. Res. Commun. , vol.439 , pp. 132-136
    • Fujita, T.1    Fujii, H.2
  • 36
    • 84875186053 scopus 로고    scopus 로고
    • The cell biology of genomes: Bringing the double helix to life
    • Misteli,T. (2013) The cell biology of genomes: bringing the double helix to life. Cell, 152, 1209-1212.
    • (2013) Cell , vol.152 , pp. 1209-1212
    • Misteli, T.1
  • 43
    • 84886993480 scopus 로고    scopus 로고
    • CRISPR interference (CRISPRi) for sequence-specific control of gene expression
    • Larson,M.H., Gilbert,L.A., Wang,X., Lim,W.A., Weissman,J.S. and Qi,L.S. (2013) CRISPR interference (CRISPRi) for sequence-specific control of gene expression. Nat. Protoc., 8, 2180-2196.
    • (2013) Nat. Protoc. , vol.8 , pp. 2180-2196
    • Larson, M.H.1    Gilbert, L.A.2    Wang, X.3    Lim, W.A.4    Weissman, J.S.5    Qi, L.S.6
  • 44
    • 84863205849 scopus 로고    scopus 로고
    • NIH Image to ImageJ: 25 years of image analysis
    • Schneider,C.A., Rasband,W.S. and Eliceiri,K.W. (2012) NIH Image to ImageJ: 25 years of image analysis. Nat. Methods, 9, 671-675.
    • (2012) Nat. Methods , vol.9 , pp. 671-675
    • Schneider, C.A.1    Rasband, W.S.2    Eliceiri, K.W.3
  • 45
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson,G. (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res., 27, 573-580.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 47
    • 0032525835 scopus 로고    scopus 로고
    • Human mucin gene MUC4: Organization of its 5'-region and polymorphism of its central tandem repeat array
    • Nollet,S., Moniaux,N., Maury,J., Petitprez,D., Degand,P., Laine,A., Porchet,N. and Aubert,J.P. (1998) Human mucin gene MUC4: organization of its 5'-region and polymorphism of its central tandem repeat array. Biochem. J, 332, 739-748.
    • (1998) Biochem. J , vol.332 , pp. 739-748
    • Nollet, S.1    Moniaux, N.2    Maury, J.3    Petitprez, D.4    Degand, P.5    Laine, A.6    Porchet, N.7    Aubert, J.P.8
  • 48
    • 38049082048 scopus 로고    scopus 로고
    • Genomic architecture and inheritance of human ribosomal RNA gene clusters
    • Stults,D.M., Killen,M.W., Pierce,H.H. and Pierce,A.J. (2008) Genomic architecture and inheritance of human ribosomal RNA gene clusters. Genome Res., 18, 13-18.
    • (2008) Genome Res. , vol.18 , pp. 13-18
    • Stults, D.M.1    Killen, M.W.2    Pierce, H.H.3    Pierce, A.J.4
  • 50
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Cas9 system
    • Wang,T., Wei,J.J., Sabatini,D.M. and Lander,E.S. (2014) Genetic screens in human cells using the CRISPR-Cas9 system. Science, 343, 80-84.
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1    Wei, J.J.2    Sabatini, D.M.3    Lander, E.S.4
  • 53
    • 84940501210 scopus 로고    scopus 로고
    • Unraveling CRISPR-Cas9 genome engineering parameters via a library-on-library approach
    • Chari,R., Mali,P., Moosburner,M. and Church,G.M. (2015) Unraveling CRISPR-Cas9 genome engineering parameters via a library-on-library approach. Nat. Methods, 12, 823-826.
    • (2015) Nat. Methods , vol.12 , pp. 823-826
    • Chari, R.1    Mali, P.2    Moosburner, M.3    Church, G.M.4
  • 55
    • 84903545084 scopus 로고    scopus 로고
    • Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease
    • Kuscu,C., Arslan,S., Singh,R., Thorpe,J. and Adli,M. (2014) Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease. Nat Biotechnol., 32, 677-683.
    • (2014) Nat Biotechnol. , vol.32 , pp. 677-683
    • Kuscu, C.1    Arslan, S.2    Singh, R.3    Thorpe, J.4    Adli, M.5
  • 62
    • 84879641784 scopus 로고    scopus 로고
    • Mechanism of eukaryotic RNA polymerase III transcription termination
    • Nielsen,S., Yuzenkova,Y. and Zenkin,N. (2013) Mechanism of eukaryotic RNA polymerase III transcription termination. Science, 340, 1577-1580.
    • (2013) Science , vol.340 , pp. 1577-1580
    • Nielsen, S.1    Yuzenkova, Y.2    Zenkin, N.3
  • 63
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Cas9 system
    • Wang,T., Wei,J.J., Sabatini,D.M. and Lander,E.S. (2014) Genetic screens in human cells using the CRISPR-Cas9 system. Science, 343, 80-84.
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1    Wei, J.J.2    Sabatini, D.M.3    Lander, E.S.4
  • 66
    • 84934267574 scopus 로고    scopus 로고
    • Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display
    • Shechner,D.M., Hacisuleyman,E., Younger,S.T. and Rinn,J.L. (2015) Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display. Nat. Methods, 12, 664-670.
    • (2015) Nat. Methods , vol.12 , pp. 664-670
    • Shechner, D.M.1    Hacisuleyman, E.2    Younger, S.T.3    Rinn, J.L.4
  • 69
    • 65249098363 scopus 로고    scopus 로고
    • Large-scale chromatin structure of inducible genes: Transcription on a condensed, linear template
    • Hu,Y., Kireev,I., Plutz,M., Ashourian,N. and Belmont,A.S. (2009) Large-scale chromatin structure of inducible genes: transcription on a condensed, linear template. J. Cell Biol., 185, 87-100.
    • (2009) J. Cell Biol. , vol.185 , pp. 87-100
    • Hu, Y.1    Kireev, I.2    Plutz, M.3    Ashourian, N.4    Belmont, A.S.5
  • 70
    • 84881255212 scopus 로고    scopus 로고
    • Spatial dynamics of chromosome translocations in living cells
    • Roukos,V., Voss,T.C., Schmidt,C.K., Lee,S., Wangsa,D. and Misteli,T. (2013) Spatial dynamics of chromosome translocations in living cells. Science, 341, 660-664.
    • (2013) Science , vol.341 , pp. 660-664
    • Roukos, V.1    Voss, T.C.2    Schmidt, C.K.3    Lee, S.4    Wangsa, D.5    Misteli, T.6


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