-
1
-
-
84896882685
-
DNA replicons for plant genome engineering
-
Baltes, N.J., Gil-Humanes, J., Cermak, T., Atkins, P.A., and, Voytas, D.F., (2014) DNA replicons for plant genome engineering. Plant Cell, 26, 151-163.
-
(2014)
Plant Cell
, vol.26
, pp. 151-163
-
-
Baltes, N.J.1
Gil-Humanes, J.2
Cermak, T.3
Atkins, P.A.4
Voytas, D.F.5
-
2
-
-
75949108066
-
Galaxy: A web-based genome analysis tool for experimentalists
-
Chapter 19, Unit 19.10.
-
Blankenberg, D., von Kuster, G., Coraor, N., Ananda, G., Lazarus, R., Mangan, M., Nekrutenko, A., and, Taylor, J., (2010) Galaxy: a web-based genome analysis tool for experimentalists. Curr. Protoc. Mol. Biol. Chapter 19, Unit 19.10. 1-21.
-
(2010)
Curr. Protoc. Mol. Biol.
, pp. 1-21
-
-
Blankenberg, D.1
Von, K.G.2
Coraor, N.3
Ananda, G.4
Lazarus, R.5
Mangan, M.6
Nekrutenko, A.7
Taylor, J.8
-
3
-
-
84920262090
-
The CRISPR/Cas9 system for plant genome editing and beyond
-
Bortesi, L., and, Fischer, R., (2015) The CRISPR/Cas9 system for plant genome editing and beyond. Biotechnol. Adv., 33, 41-52.
-
(2015)
Biotechnol. Adv.
, vol.33
, pp. 41-52
-
-
Bortesi, L.1
Fischer, R.2
-
4
-
-
84922322005
-
Guide RNA functional modules direct Cas9 activity and orthogonality
-
Briner, A.E., Donohoue, P.D., Gomaa, A.A., Selle, K., Slorach, E.M., Nye, C.H., Haurwitz, R.E., Beisel, C.L., May, A.P., and, Barrangou, R., (2014) Guide RNA functional modules direct Cas9 activity and orthogonality. Mol. Cell, 56, 333-339.
-
(2014)
Mol. Cell
, vol.56
, pp. 333-339
-
-
Briner, A.E.1
Donohoue, P.D.2
Gomaa, A.A.3
Selle, K.4
Slorach, E.M.5
Nye, C.H.6
Haurwitz, R.E.7
Beisel, C.L.8
May, A.P.9
Barrangou, R.10
-
5
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough, S.J., and, Bent, A.F., (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J., 16, 735-743.
-
(1998)
Plant J.
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
6
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong, L., Ran, F.A., Cox, D., et al. (2013) Multiplex genome engineering using CRISPR/Cas systems. Science (New York, N.Y.), 339, 819-823.
-
(2013)
Science (New York, N.Y.)
, vol.339
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
-
7
-
-
84913594397
-
Genome editing. the new frontier of genome engineering with CRISPR-Cas9
-
Doudna, J.A., and, Charpentier, E., (2014) Genome editing. The new frontier of genome engineering with CRISPR-Cas9. Science (New York, N.Y.), 346, 1258096.
-
(2014)
Science (New York, N.Y.)
, vol.346
, pp. 1258096
-
-
Doudna, J.A.1
Charpentier, E.2
-
8
-
-
84887104139
-
Orthogonal Cas9 proteins for RNA-guided gene regulation and editing
-
Esvelt, K.M., Mali, P., Braff, J.L., Moosburner, M., Yaung, S.J., and, Church, G.M., (2013) Orthogonal Cas9 proteins for RNA-guided gene regulation and editing. Nat. Methods, 10, 1116-1121.
-
(2013)
Nat. Methods
, vol.10
, pp. 1116-1121
-
-
Esvelt, K.M.1
Mali, P.2
Braff, J.L.3
Moosburner, M.4
Yaung, S.J.5
Church, G.M.6
-
9
-
-
84860788027
-
In planta gene targeting
-
Fauser, F., Roth, N., Pacher, M., Ilg, G., Sánchez-Fernández, R., Biesgen, C., and, Puchta, H., (2012) In planta gene targeting. Proc. Natl Acad. Sci. USA, 109, 7535-7540.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 7535-7540
-
-
Fauser, F.1
Roth, N.2
Pacher, M.3
Ilg, G.4
Sánchez-Fernández, R.5
Biesgen, C.6
Puchta, H.7
-
10
-
-
84904068340
-
Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana
-
Fauser, F., Schiml, S., and, Puchta, H., (2014) Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. Plant J., 79, 348-359.
-
(2014)
Plant J.
, vol.79
, pp. 348-359
-
-
Fauser, F.1
Schiml, S.2
Puchta, H.3
-
11
-
-
84895832944
-
Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems
-
Fonfara, I., Le Rhun, A., Chylinski, K., Makarova, K.S., Lécrivain, A.-L., Bzdrenga, J., Koonin, E.V., and, Charpentier, E., (2014) Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems. Nucleic Acids Res., 42, 2577-2590.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 2577-2590
-
-
Fonfara, I.1
Le Rhun, A.2
Chylinski, K.3
Makarova, K.S.4
Lécrivain, A.-L.5
Bzdrenga, J.6
Koonin, E.V.7
Charpentier, E.8
-
12
-
-
25844449770
-
Galaxy: A platform for interactive large-scale genome analysis
-
Giardine, B., Riemer, C., Hardison, R.C., et al. (2005) Galaxy: a platform for interactive large-scale genome analysis. Genome Res., 15, 1451-1455.
-
(2005)
Genome Res.
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
-
13
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks, J., Nekrutenko, A., and, Taylor, J., (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
-
(2010)
Genome Biol.
, vol.11
, pp. R86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
14
-
-
84902096048
-
Development and applications of CRISPR-Cas9 for genome engineering
-
Hsu, P.D., Lander, E.S., and, Zhang, F., (2014) Development and applications of CRISPR-Cas9 for genome engineering. Cell, 157, 1262-1278.
-
(2014)
Cell
, vol.157
, pp. 1262-1278
-
-
Hsu, P.D.1
Lander, E.S.2
Zhang, F.3
-
15
-
-
0023955386
-
Isolation and biochemical analysis of ethyl methanesulfonate-induced alcohol dehydrogenase null mutants of arabidopsis thaliana (L.) Heynh
-
Jacobs, M., Dolferus, R., and, Van den Bossche, D., (1988) Isolation and biochemical analysis of ethyl methanesulfonate-induced alcohol dehydrogenase null mutants of arabidopsis thaliana (L.) Heynh. Biochem. Genet., 26, 105-122.
-
(1988)
Biochem. Genet.
, vol.26
, pp. 105-122
-
-
Jacobs, M.1
Dolferus, R.2
Van Den Bossche, D.3
-
16
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J.A., and, Charpentier, E., (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science (New York, N.Y.), 337, 816-821.
-
(2012)
Science (New York, N.Y.)
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
17
-
-
0027549678
-
Polyubiquitin gene expression and structural properties of the ubi4-2 gene in Petroselinum crispum
-
Kawalleck, P., Somssich, I.E., Feldbrügge, M., Hahlbrock, K., and, Weisshaar, B., (1993) Polyubiquitin gene expression and structural properties of the ubi4-2 gene in Petroselinum crispum. Plant Mol. Biol., 21, 673-684.
-
(1993)
Plant Mol. Biol.
, vol.21
, pp. 673-684
-
-
Kawalleck, P.1
Somssich, I.E.2
Feldbrügge, M.3
Hahlbrock, K.4
Weisshaar, B.5
-
18
-
-
84937908208
-
Engineered CRISPR-Cas9 nucleases with altered PAM specificities
-
Kleinstiver, B.P., Prew, M.S., Tsai, S.Q., et al. (2015) Engineered CRISPR-Cas9 nucleases with altered PAM specificities. Nature, 523, 481-485.
-
(2015)
Nature
, vol.523
, pp. 481-485
-
-
Kleinstiver, B.P.1
Prew, M.S.2
Tsai, S.Q.3
-
19
-
-
84883785822
-
Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9
-
Li, J.-F., Norville, J.E., Aach, J., McCormack, M., Zhang, D., Bush, J., Church, G.M., and, Sheen, J., (2013) Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat. Biotechnol., 31, 688-691.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 688-691
-
-
Li, J.-F.1
Norville, J.E.2
Aach, J.3
McCormack, M.4
Zhang, D.5
Bush, J.6
Church, G.M.7
Sheen, J.8
-
20
-
-
84925399474
-
Cas9-based genome editing in Arabidopsis and tobacco
-
Li, J.-F., Zhang, D., and, Sheen, J., (2014) Cas9-based genome editing in Arabidopsis and tobacco. Methods Enzymol., 546, 459-472.
-
(2014)
Methods Enzymol.
, vol.546
, pp. 459-472
-
-
Li, J.-F.1
Zhang, D.2
Sheen, J.3
-
21
-
-
84924865425
-
Targeted Plant Genome Editing via the CRISPR/Cas9 Technology
-
Li, J.-F., Zhang, D., and, Sheen, J., (2015) Targeted Plant Genome Editing via the CRISPR/Cas9 Technology. Methods Mol. Biol., 1284, 239-255.
-
(2015)
Methods Mol. Biol.
, vol.1284
, pp. 239-255
-
-
Li, J.-F.1
Zhang, D.2
Sheen, J.3
-
22
-
-
84896279030
-
The role of CRISPR-Cas systems in virulence of pathogenic bacteria
-
Louwen, R., Staals, R.H.J., Endtz, H.P., van Baarlen, P., and, van der Oost, J., (2014) The role of CRISPR-Cas systems in virulence of pathogenic bacteria. Microbiol. Mol. Biol. Rev., 78, 74-88.
-
(2014)
Microbiol. Mol. Biol. Rev.
, vol.78
, pp. 74-88
-
-
Louwen, R.1
Staals, R.H.J.2
Endtz, H.P.3
Van Baarlen, P.4
Van Der Oost, J.5
-
23
-
-
84924347318
-
Multicolor CRISPR labeling of chromosomal loci in human cells
-
Ma, H., Naseri, A., Reyes-Gutierrez, P., Wolfe, S.A., Zhang, S., and, Pederson, T., (2015) Multicolor CRISPR labeling of chromosomal loci in human cells. Proc. Natl Acad. Sci. USA, 112, 3002-3007.
-
(2015)
Proc. Natl Acad. Sci. USA
, vol.112
, pp. 3002-3007
-
-
Ma, H.1
Naseri, A.2
Reyes-Gutierrez, P.3
Wolfe, S.A.4
Zhang, S.5
Pederson, T.6
-
24
-
-
84883828590
-
Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease
-
Nekrasov, V., Staskawicz, B., Weigel, D., Jones Jonathan, D.G., and, Kamoun, S., (2013) Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat. Biotechnol., 31, 691-693.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 691-693
-
-
Nekrasov, V.1
Staskawicz, B.2
Weigel, D.3
Jones Jonathan, D.G.4
Kamoun, S.5
-
25
-
-
0141681133
-
Different pathways of homologous recombination are used for the repair of double-strand breaks within tandemly arranged sequences in the plant genome
-
Orel, N., Kyryk, A., and, Puchta, H., (2003) Different pathways of homologous recombination are used for the repair of double-strand breaks within tandemly arranged sequences in the plant genome. Plant J., 35, 604-612.
-
(2003)
Plant J.
, vol.35
, pp. 604-612
-
-
Orel, N.1
Kyryk, A.2
Puchta, H.3
-
26
-
-
84928212884
-
RNA-guided transcriptional regulation in planta via synthetic dCas9-based transcription factors
-
Piatek, A., Ali, Z., Baazim, H., Li, L., Abulfaraj, A., Al-Shareef, S., Aouida, M., and, Mahfouz, M.M., (2015) RNA-guided transcriptional regulation in planta via synthetic dCas9-based transcription factors. Plant Biotechnol. J., 13, 578-589.
-
(2015)
Plant Biotechnol. J.
, vol.13
, pp. 578-589
-
-
Piatek, A.1
Ali, Z.2
Baazim, H.3
Li, L.4
Abulfaraj, A.5
Al-Shareef, S.6
Aouida, M.7
Mahfouz, M.M.8
-
27
-
-
84901386271
-
Synthetic nucleases for genome engineering in plants: Prospects for a bright future
-
Puchta, H., and, Fauser, F., (2014) Synthetic nucleases for genome engineering in plants: prospects for a bright future. Plant J., 78, 727-741.
-
(2014)
Plant J.
, vol.78
, pp. 727-741
-
-
Puchta, H.1
Fauser, F.2
-
28
-
-
0029946668
-
Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination
-
Puchta, H., Dujon, B., and, Hohn, B., (1996) Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination. Proc. Natl Acad. Sci. USA, 93, 5055-5060.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 5055-5060
-
-
Puchta, H.1
Dujon, B.2
Hohn, B.3
-
29
-
-
84927514894
-
In vivo genome editing using Staphylococcus aureus Cas9
-
Ran, F.A., Cong, Le, Yan, W.X., et al. (2015) In vivo genome editing using Staphylococcus aureus Cas9. Nature, 520, 186-191.
-
(2015)
Nature
, vol.520
, pp. 186-191
-
-
Ran, F.A.1
Cong, L.2
Yan, W.X.3
-
30
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J.T., Thorvaldsdõttir, H., Winckler, W., Guttman, M., Lander, E.S., Getz, G., and, Mesirov, J.P., (2011) Integrative genomics viewer. Nat. Biotechnol., 29, 24-26.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdõttir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
Getz, G.6
Mesirov, J.P.7
-
31
-
-
0032531757
-
Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells
-
Salomon, S., and, Puchta, H., (1998) Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells. The EMBO Journal, 17, 6086-6095.
-
(1998)
The EMBO Journal
, vol.17
, pp. 6086-6095
-
-
Salomon, S.1
Puchta, H.2
-
32
-
-
84916624400
-
The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable progeny
-
Schiml, S., Fauser, F., and, Puchta, H., (2014) The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable progeny. Plant J., 80, 1139-1150.
-
(2014)
Plant J.
, vol.80
, pp. 1139-1150
-
-
Schiml, S.1
Fauser, F.2
Puchta, H.3
-
33
-
-
85042815594
-
Targeted genome modification of crop plants using a CRISPR-Cas system
-
Shan, Q., Wang, Y., Li, J., et al. (2013) Targeted genome modification of crop plants using a CRISPR-Cas system. Nat. Biotechnol., 31, 686-688.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 686-688
-
-
Shan, Q.1
Wang, Y.2
Li, J.3
-
34
-
-
0036016441
-
Efficient repair of genomic double-strand breaks by homologous recombination between directly repeated sequences in the plant genome
-
Siebert, R., and, Puchta, H., (2002) Efficient repair of genomic double-strand breaks by homologous recombination between directly repeated sequences in the plant genome. Plant Cell, 14, 1121-1131.
-
(2002)
Plant Cell
, vol.14
, pp. 1121-1131
-
-
Siebert, R.1
Puchta, H.2
-
35
-
-
84875634162
-
Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
-
Thorvaldsdõttir, H., Robinson, J.T., and, Mesirov, J.P., (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinformatics, 14, 178-192.
-
(2013)
Brief. Bioinformatics
, vol.14
, pp. 178-192
-
-
Thorvaldsdõttir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
36
-
-
84874627868
-
Plant genome engineering with sequence-specific nucleases
-
Voytas, D.F., (2013) Plant genome engineering with sequence-specific nucleases. Annu. Rev. Plant Biol., 64, 327-350.
-
(2013)
Annu. Rev. Plant Biol.
, vol.64
, pp. 327-350
-
-
Voytas, D.F.1
-
37
-
-
84939191325
-
Use of designer nucleases for targeted gene and genome editing in plants
-
[Epub ahead of print].
-
Weeks, D.P., Spalding, M.H., and, Yang, B., (2015) Use of designer nucleases for targeted gene and genome editing in plants. Plant Biotechnol. J. DOI: 10.1111/pbi.12448 [Epub ahead of print].
-
(2015)
Plant Biotechnol. J.
-
-
Weeks, D.P.1
Spalding, M.H.2
Yang, B.3
-
38
-
-
84925262435
-
Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system
-
Xie, K., Minkenberg, B., and, Yang, Y., (2015) Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system. Proc. Natl Acad. Sci. USA, 112, 3570-3575.
-
(2015)
Proc. Natl Acad. Sci. USA
, vol.112
, pp. 3570-3575
-
-
Xie, K.1
Minkenberg, B.2
Yang, Y.3
|