메뉴 건너뛰기




Volumn 84, Issue 6, 2015, Pages 1295-1305

Highly efficient heritable plant genome engineering using Cas9 orthologues from Streptococcus thermophilus and Staphylococcus aureus

Author keywords

clustered regularly interspaced short palindromic repeats; double strand break repair; gene editing; homologous recombination; non homologous end joining; technical advance

Indexed keywords

BACTERIA; CELLS; CYTOLOGY; ENZYMES; FREE RADICALS; GENES; JOINING; PLANT CELL CULTURE; PROTEINS;

EID: 84961350912     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.13078     Document Type: Article
Times cited : (206)

References (38)
  • 3
    • 84920262090 scopus 로고    scopus 로고
    • The CRISPR/Cas9 system for plant genome editing and beyond
    • Bortesi, L., and, Fischer, R., (2015) The CRISPR/Cas9 system for plant genome editing and beyond. Biotechnol. Adv., 33, 41-52.
    • (2015) Biotechnol. Adv. , vol.33 , pp. 41-52
    • Bortesi, L.1    Fischer, R.2
  • 5
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • Clough, S.J., and, Bent, A.F., (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J., 16, 735-743.
    • (1998) Plant J. , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 6
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L., Ran, F.A., Cox, D., et al. (2013) Multiplex genome engineering using CRISPR/Cas systems. Science (New York, N.Y.), 339, 819-823.
    • (2013) Science (New York, N.Y.) , vol.339 , pp. 819-823
    • Cong, L.1    Ran, F.A.2    Cox, D.3
  • 7
    • 84913594397 scopus 로고    scopus 로고
    • Genome editing. the new frontier of genome engineering with CRISPR-Cas9
    • Doudna, J.A., and, Charpentier, E., (2014) Genome editing. The new frontier of genome engineering with CRISPR-Cas9. Science (New York, N.Y.), 346, 1258096.
    • (2014) Science (New York, N.Y.) , vol.346 , pp. 1258096
    • Doudna, J.A.1    Charpentier, E.2
  • 10
    • 84904068340 scopus 로고    scopus 로고
    • Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana
    • Fauser, F., Schiml, S., and, Puchta, H., (2014) Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. Plant J., 79, 348-359.
    • (2014) Plant J. , vol.79 , pp. 348-359
    • Fauser, F.1    Schiml, S.2    Puchta, H.3
  • 12
    • 25844449770 scopus 로고    scopus 로고
    • Galaxy: A platform for interactive large-scale genome analysis
    • Giardine, B., Riemer, C., Hardison, R.C., et al. (2005) Galaxy: a platform for interactive large-scale genome analysis. Genome Res., 15, 1451-1455.
    • (2005) Genome Res. , vol.15 , pp. 1451-1455
    • Giardine, B.1    Riemer, C.2    Hardison, R.C.3
  • 13
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Goecks, J., Nekrutenko, A., and, Taylor, J., (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
    • (2010) Genome Biol. , vol.11 , pp. R86
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 14
    • 84902096048 scopus 로고    scopus 로고
    • Development and applications of CRISPR-Cas9 for genome engineering
    • Hsu, P.D., Lander, E.S., and, Zhang, F., (2014) Development and applications of CRISPR-Cas9 for genome engineering. Cell, 157, 1262-1278.
    • (2014) Cell , vol.157 , pp. 1262-1278
    • Hsu, P.D.1    Lander, E.S.2    Zhang, F.3
  • 15
    • 0023955386 scopus 로고
    • Isolation and biochemical analysis of ethyl methanesulfonate-induced alcohol dehydrogenase null mutants of arabidopsis thaliana (L.) Heynh
    • Jacobs, M., Dolferus, R., and, Van den Bossche, D., (1988) Isolation and biochemical analysis of ethyl methanesulfonate-induced alcohol dehydrogenase null mutants of arabidopsis thaliana (L.) Heynh. Biochem. Genet., 26, 105-122.
    • (1988) Biochem. Genet. , vol.26 , pp. 105-122
    • Jacobs, M.1    Dolferus, R.2    Van Den Bossche, D.3
  • 17
    • 0027549678 scopus 로고
    • Polyubiquitin gene expression and structural properties of the ubi4-2 gene in Petroselinum crispum
    • Kawalleck, P., Somssich, I.E., Feldbrügge, M., Hahlbrock, K., and, Weisshaar, B., (1993) Polyubiquitin gene expression and structural properties of the ubi4-2 gene in Petroselinum crispum. Plant Mol. Biol., 21, 673-684.
    • (1993) Plant Mol. Biol. , vol.21 , pp. 673-684
    • Kawalleck, P.1    Somssich, I.E.2    Feldbrügge, M.3    Hahlbrock, K.4    Weisshaar, B.5
  • 18
    • 84937908208 scopus 로고    scopus 로고
    • Engineered CRISPR-Cas9 nucleases with altered PAM specificities
    • Kleinstiver, B.P., Prew, M.S., Tsai, S.Q., et al. (2015) Engineered CRISPR-Cas9 nucleases with altered PAM specificities. Nature, 523, 481-485.
    • (2015) Nature , vol.523 , pp. 481-485
    • Kleinstiver, B.P.1    Prew, M.S.2    Tsai, S.Q.3
  • 19
    • 84883785822 scopus 로고    scopus 로고
    • Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9
    • Li, J.-F., Norville, J.E., Aach, J., McCormack, M., Zhang, D., Bush, J., Church, G.M., and, Sheen, J., (2013) Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat. Biotechnol., 31, 688-691.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 688-691
    • Li, J.-F.1    Norville, J.E.2    Aach, J.3    McCormack, M.4    Zhang, D.5    Bush, J.6    Church, G.M.7    Sheen, J.8
  • 20
    • 84925399474 scopus 로고    scopus 로고
    • Cas9-based genome editing in Arabidopsis and tobacco
    • Li, J.-F., Zhang, D., and, Sheen, J., (2014) Cas9-based genome editing in Arabidopsis and tobacco. Methods Enzymol., 546, 459-472.
    • (2014) Methods Enzymol. , vol.546 , pp. 459-472
    • Li, J.-F.1    Zhang, D.2    Sheen, J.3
  • 21
    • 84924865425 scopus 로고    scopus 로고
    • Targeted Plant Genome Editing via the CRISPR/Cas9 Technology
    • Li, J.-F., Zhang, D., and, Sheen, J., (2015) Targeted Plant Genome Editing via the CRISPR/Cas9 Technology. Methods Mol. Biol., 1284, 239-255.
    • (2015) Methods Mol. Biol. , vol.1284 , pp. 239-255
    • Li, J.-F.1    Zhang, D.2    Sheen, J.3
  • 24
    • 84883828590 scopus 로고    scopus 로고
    • Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease
    • Nekrasov, V., Staskawicz, B., Weigel, D., Jones Jonathan, D.G., and, Kamoun, S., (2013) Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat. Biotechnol., 31, 691-693.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 691-693
    • Nekrasov, V.1    Staskawicz, B.2    Weigel, D.3    Jones Jonathan, D.G.4    Kamoun, S.5
  • 25
    • 0141681133 scopus 로고    scopus 로고
    • Different pathways of homologous recombination are used for the repair of double-strand breaks within tandemly arranged sequences in the plant genome
    • Orel, N., Kyryk, A., and, Puchta, H., (2003) Different pathways of homologous recombination are used for the repair of double-strand breaks within tandemly arranged sequences in the plant genome. Plant J., 35, 604-612.
    • (2003) Plant J. , vol.35 , pp. 604-612
    • Orel, N.1    Kyryk, A.2    Puchta, H.3
  • 27
    • 84901386271 scopus 로고    scopus 로고
    • Synthetic nucleases for genome engineering in plants: Prospects for a bright future
    • Puchta, H., and, Fauser, F., (2014) Synthetic nucleases for genome engineering in plants: prospects for a bright future. Plant J., 78, 727-741.
    • (2014) Plant J. , vol.78 , pp. 727-741
    • Puchta, H.1    Fauser, F.2
  • 28
    • 0029946668 scopus 로고    scopus 로고
    • Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination
    • Puchta, H., Dujon, B., and, Hohn, B., (1996) Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination. Proc. Natl Acad. Sci. USA, 93, 5055-5060.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 5055-5060
    • Puchta, H.1    Dujon, B.2    Hohn, B.3
  • 29
    • 84927514894 scopus 로고    scopus 로고
    • In vivo genome editing using Staphylococcus aureus Cas9
    • Ran, F.A., Cong, Le, Yan, W.X., et al. (2015) In vivo genome editing using Staphylococcus aureus Cas9. Nature, 520, 186-191.
    • (2015) Nature , vol.520 , pp. 186-191
    • Ran, F.A.1    Cong, L.2    Yan, W.X.3
  • 31
    • 0032531757 scopus 로고    scopus 로고
    • Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells
    • Salomon, S., and, Puchta, H., (1998) Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cells. The EMBO Journal, 17, 6086-6095.
    • (1998) The EMBO Journal , vol.17 , pp. 6086-6095
    • Salomon, S.1    Puchta, H.2
  • 32
    • 84916624400 scopus 로고    scopus 로고
    • The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable progeny
    • Schiml, S., Fauser, F., and, Puchta, H., (2014) The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable progeny. Plant J., 80, 1139-1150.
    • (2014) Plant J. , vol.80 , pp. 1139-1150
    • Schiml, S.1    Fauser, F.2    Puchta, H.3
  • 33
    • 85042815594 scopus 로고    scopus 로고
    • Targeted genome modification of crop plants using a CRISPR-Cas system
    • Shan, Q., Wang, Y., Li, J., et al. (2013) Targeted genome modification of crop plants using a CRISPR-Cas system. Nat. Biotechnol., 31, 686-688.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 686-688
    • Shan, Q.1    Wang, Y.2    Li, J.3
  • 34
    • 0036016441 scopus 로고    scopus 로고
    • Efficient repair of genomic double-strand breaks by homologous recombination between directly repeated sequences in the plant genome
    • Siebert, R., and, Puchta, H., (2002) Efficient repair of genomic double-strand breaks by homologous recombination between directly repeated sequences in the plant genome. Plant Cell, 14, 1121-1131.
    • (2002) Plant Cell , vol.14 , pp. 1121-1131
    • Siebert, R.1    Puchta, H.2
  • 35
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdõttir, H., Robinson, J.T., and, Mesirov, J.P., (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinformatics, 14, 178-192.
    • (2013) Brief. Bioinformatics , vol.14 , pp. 178-192
    • Thorvaldsdõttir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 36
    • 84874627868 scopus 로고    scopus 로고
    • Plant genome engineering with sequence-specific nucleases
    • Voytas, D.F., (2013) Plant genome engineering with sequence-specific nucleases. Annu. Rev. Plant Biol., 64, 327-350.
    • (2013) Annu. Rev. Plant Biol. , vol.64 , pp. 327-350
    • Voytas, D.F.1
  • 37
    • 84939191325 scopus 로고    scopus 로고
    • Use of designer nucleases for targeted gene and genome editing in plants
    • [Epub ahead of print].
    • Weeks, D.P., Spalding, M.H., and, Yang, B., (2015) Use of designer nucleases for targeted gene and genome editing in plants. Plant Biotechnol. J. DOI: 10.1111/pbi.12448 [Epub ahead of print].
    • (2015) Plant Biotechnol. J.
    • Weeks, D.P.1    Spalding, M.H.2    Yang, B.3
  • 38
    • 84925262435 scopus 로고    scopus 로고
    • Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system
    • Xie, K., Minkenberg, B., and, Yang, Y., (2015) Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system. Proc. Natl Acad. Sci. USA, 112, 3570-3575.
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 3570-3575
    • Xie, K.1    Minkenberg, B.2    Yang, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.