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Volumn 37, Issue 14, 2017, Pages

RNA binding by histone methyltransferases Set1 and Set2

Author keywords

Chromatin; Histone methyltransferase; Histone modification; RNA; RNAprotein interaction; Set1; Set2; Transcription; UV cross linking; Yeast

Indexed keywords

HISTONE METHYLTRANSFERASE; HISTONE METHYLTRANSFERASE SET1; HISTONE METHYLTRANSFERASE SET2; RIBOSOME DNA; RNA; RNA RECOGNITION MOTIF 2; RNA RECOGNITION MOTIF PROTEIN; SPACER DNA; UNCLASSIFIED DRUG; UNTRANSLATED RNA; CHROMATIN; DNA BINDING PROTEIN; HISTONE; HISTONE LYSINE METHYLTRANSFERASE; METHYLTRANSFERASE; RNA POLYMERASE II; SACCHAROMYCES CEREVISIAE PROTEIN; SET1 PROTEIN, S CEREVISIAE; SET2 PROTEIN, S CEREVISIAE; TRANSCRIPTION FACTOR;

EID: 85021789226     PISSN: 02707306     EISSN: 10985549     Source Type: Journal    
DOI: 10.1128/MCB.00165-17     Document Type: Article
Times cited : (30)

References (66)
  • 1
    • 85014527692 scopus 로고    scopus 로고
    • Regulatory feedback from nascent RNA to chromatin and transcription
    • Skalska L, Beltran-Nebot M, Ule J, Jenner RG. 2017. Regulatory feedback from nascent RNA to chromatin and transcription. Nat Rev Mol Cell Biol 18:331-337. https://doi.org/10.1038/nrm.2017.12
    • (2017) Nat Rev Mol Cell Biol , vol.18 , pp. 331-337
    • Skalska, L.1    Beltran-Nebot, M.2    Ule, J.3    Jenner, R.G.4
  • 4
    • 84921721617 scopus 로고    scopus 로고
    • Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins
    • Kramer K, Sachsenberg T, Beckmann BM, Qamar S, Boon K-L, Hentze MW, Kohlbacher O, Urlaub H. 2014. Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins. Nat Methods 11:1064-1070. https://doi.org/10.1038/nmeth.3092
    • (2014) Nat Methods , vol.11 , pp. 1064-1070
    • Kramer, K.1    Sachsenberg, T.2    Beckmann, B.M.3    Qamar, S.4    Boon, K.-L.5    Hentze, M.W.6    Kohlbacher, O.7    Urlaub, H.8
  • 6
    • 84986877616 scopus 로고    scopus 로고
    • The pol II CTD: new twists in the tail
    • Zaborowska J, EgloffS, Murphy S. 2016. The pol II CTD: new twists in the tail. Nat Struct Mol Biol 23:771-777. https://doi.org/10.1038/nsmb.3285
    • (2016) Nat Struct Mol Biol , vol.23 , pp. 771-777
    • Zaborowska, J.1    Egloff, S.2    Murphy, S.3
  • 7
    • 85014115484 scopus 로고    scopus 로고
    • The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain
    • Harlen KM, Churchman LS. 2017. The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain. Nat Rev Mol Cell Biol 18:263-273. https://doi.org/10.1038/nrm.2017.10
    • (2017) Nat Rev Mol Cell Biol , vol.18 , pp. 263-273
    • Harlen, K.M.1    Churchman, L.S.2
  • 8
    • 84872405841 scopus 로고    scopus 로고
    • Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription
    • Heidemann M, Hintermair C, Voß K, Eick D. 2013. Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription. Biochim Biophys Acta 1829:55-62. https://doi.org/10.1016/j.bbagrm.2012.08.013
    • (2013) Biochim Biophys Acta , vol.1829 , pp. 55-62
    • Heidemann, M.1    Hintermair, C.2    Voß, K.3    Eick, D.4
  • 9
    • 84861870951 scopus 로고    scopus 로고
    • The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis
    • Shilatifard A. 2012. The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis. Annu Rev Biochem 81:65-95. https://doi.org/10.1146/annurev-biochem-051710-134100
    • (2012) Annu Rev Biochem , vol.81 , pp. 65-95
    • Shilatifard, A.1
  • 10
    • 84974693469 scopus 로고    scopus 로고
    • Epigenetic balance of gene expression by Polycomb and COMPASS families
    • Piunti A, Shilatifard A. 2016. Epigenetic balance of gene expression by Polycomb and COMPASS families. Science 352:aad9780. https://doi.org/10.1126/science.aad9780
    • (2016) Science , vol.352
    • Piunti, A.1    Shilatifard, A.2
  • 11
    • 85021780036 scopus 로고    scopus 로고
    • Shaping the cellular landscape with Set2/SETD2 methylation
    • in press
    • McDaniel SL, Strahl BD. Shaping the cellular landscape with Set2/SETD2 methylation. Cell Mol Life Sci, in press
    • Cell Mol Life Sci
    • McDaniel, S.L.1    Strahl, B.D.2
  • 12
    • 84878433654 scopus 로고    scopus 로고
    • UpSETing chromatin during non-coding RNA production
    • Venkatesh S, Workman JL, Smolle M. 2013. UpSETing chromatin during non-coding RNA production. Epigenetics Chromatin 6:16. https://doi.org/10.1186/1756-8935-6-16
    • (2013) Epigenetics Chromatin , vol.6 , pp. 16
    • Venkatesh, S.1    Workman, J.L.2    Smolle, M.3
  • 13
    • 0035893240 scopus 로고    scopus 로고
    • Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae
    • Briggs SD, Bryk M, Strahl BD, Cheung WL, Davie JK, Dent SY, Winston F, Allis CD. 2001. Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae. Genes Dev 15:3286-3295. https://doi.org/10.1101/gad.940201
    • (2001) Genes Dev , vol.15 , pp. 3286-3295
    • Briggs, S.D.1    Bryk, M.2    Strahl, B.D.3    Cheung, W.L.4    Davie, J.K.5    Dent, S.Y.6    Winston, F.7    Allis, C.D.8
  • 14
    • 0030668324 scopus 로고    scopus 로고
    • Set1, a yeast member of the trithorax family, functions in transcriptional silencing and diverse cellular processes
    • Nislow C, Ray E, Pillus L. 1997. Set1, a yeast member of the trithorax family, functions in transcriptional silencing and diverse cellular processes. Mol Biol Cell 8:2421-2436. https://doi.org/10.1091/mbc.8.12.2421
    • (1997) Mol Biol Cell , vol.8 , pp. 2421-2436
    • Nislow, C.1    Ray, E.2    Pillus, L.3
  • 19
    • 40349116304 scopus 로고    scopus 로고
    • A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
    • Berretta J, Pinskaya M, Morillon A. 2008. A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae. Genes Dev 22:615-626. https://doi.org/10.1101/gad.458008
    • (2008) Genes Dev , vol.22 , pp. 615-626
    • Berretta, J.1    Pinskaya, M.2    Morillon, A.3
  • 20
    • 84908320093 scopus 로고    scopus 로고
    • Multifaceted genome control by Set1 dependent and independent of H3K4 methylation and the Set1C/COMPASS complex
    • Mikheyeva IV, Grady PJR, Tamburini FB, Lorenz DR, Cam HP. 2014. Multifaceted genome control by Set1 dependent and independent of H3K4 methylation and the Set1C/COMPASS complex. PLoS Genet 10: e1004740. https://doi.org/10.1371/journal.pgen.1004740
    • (2014) PLoS Genet , vol.10
    • Mikheyeva, I.V.1    Grady, P.J.R.2    Tamburini, F.B.3    Lorenz, D.R.4    Cam, H.P.5
  • 21
    • 84868696925 scopus 로고    scopus 로고
    • CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposons
    • Lorenz DR, Mikheyeva IV, Johansen P, Meyer L, Berg A, Grewal SIS, Cam HP. 2012. CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposons. Mol Cell Biol 32:4215-4225. https://doi.org/10.1128/MCB.00395-12
    • (2012) Mol Cell Biol , vol.32 , pp. 4215-4225
    • Lorenz, D.R.1    Mikheyeva, I.V.2    Johansen, P.3    Meyer, L.4    Berg, A.5    Grewal, S.I.S.6    Cam, H.P.7
  • 22
    • 84943360946 scopus 로고    scopus 로고
    • Heterochromatin assembly and transcriptome repression by Set1 in coordination with a class II histone deacetylase
    • Lorenz DR, Meyer LF, Grady PJ, Meyer MM, Cam HP. 2014. Heterochromatin assembly and transcriptome repression by Set1 in coordination with a class II histone deacetylase. eLife 3:e04506. https://doi.org/10.7554/eLife.04506
    • (2014) eLife , vol.3
    • Lorenz, D.R.1    Meyer, L.F.2    Grady, P.J.3    Meyer, M.M.4    Cam, H.P.5
  • 23
    • 33748304113 scopus 로고    scopus 로고
    • Sir2 represses endogenous polymerase II transcription units in the ribosomal DNA nontranscribed spacer
    • Li C, Mueller JE, Bryk M. 2006. Sir2 represses endogenous polymerase II transcription units in the ribosomal DNA nontranscribed spacer. Mol Biol Cell 17:3848-3859. https://doi.org/10.1091/mbc. E06-03-0205
    • (2006) Mol Biol Cell , vol.17 , pp. 3848-3859
    • Li, C.1    Mueller, J.E.2    Bryk, M.3
  • 24
    • 85000843789 scopus 로고    scopus 로고
    • Selective suppression of antisense transcription by Set2-mediated H3K36 methylation
    • Venkatesh S, Li H, Gogol MM, Workman JL. 2016. Selective suppression of antisense transcription by Set2-mediated H3K36 methylation. Nat Commun 7:13610. https://doi.org/10.1038/ncomms13610
    • (2016) Nat Commun , vol.7 , pp. 13610
    • Venkatesh, S.1    Li, H.2    Gogol, M.M.3    Workman, J.L.4
  • 26
    • 84867160564 scopus 로고    scopus 로고
    • The RNA polymerase II CTD coordinates transcription and RNA processing
    • Hsin J-P, Manley JL. 2012. The RNA polymerase II CTD coordinates transcription and RNA processing. Genes Dev 26:2119-2137. https://doi.org/10.1101/gad.200303.112
    • (2012) Genes Dev , vol.26 , pp. 2119-2137
    • Hsin, J.-P.1    Manley, J.L.2
  • 27
    • 84961214527 scopus 로고    scopus 로고
    • Histone H3K36 methylation regulates pre-mRNA splicing in Saccharomyces cerevisiae
    • Sorenson MR, Jha DK, Ucles SA, Flood DM, Strahl BD, Stevens SW, Kress TL. 2016. Histone H3K36 methylation regulates pre-mRNA splicing in Saccharomyces cerevisiae. RNA Biol 13:412-426. https://doi.org/10.1080/15476286.2016.1144009
    • (2016) RNA Biol , vol.13 , pp. 412-426
    • Sorenson, M.R.1    Jha, D.K.2    Ucles, S.A.3    Flood, D.M.4    Strahl, B.D.5    Stevens, S.W.6    Kress, T.L.7
  • 29
    • 17144365769 scopus 로고    scopus 로고
    • Histone trimethylation by Set1 is coordinated by the RRM, autoinhibitory, and catalytic domains
    • Schlichter A, Cairns BR. 2005. Histone trimethylation by Set1 is coordinated by the RRM, autoinhibitory, and catalytic domains. EMBO J 24: 1222-1231. https://doi.org/10.1038/sj.emboj.7600607
    • (2005) EMBO J , vol.24 , pp. 1222-1231
    • Schlichter, A.1    Cairns, B.R.2
  • 30
    • 84878708955 scopus 로고    scopus 로고
    • Quantitative proteomic analysis reveals concurrent RNA-protein interac-tions and identifies new RNA-binding proteins in Saccharomyces cerevisiae
    • Klass DM, Scheibe M, Butter F, Hogan GJ, Mann M, Brown PO. 2013. Quantitative proteomic analysis reveals concurrent RNA-protein interac-tions and identifies new RNA-binding proteins in Saccharomyces cerevisiae. Genome Res 23:1028-1038. https://doi.org/10.1101/gr.153031.112
    • (2013) Genome Res , vol.23 , pp. 1028-1038
    • Klass, D.M.1    Scheibe, M.2    Butter, F.3    Hogan, G.J.4    Mann, M.5    Brown, P.O.6
  • 31
    • 0037192780 scopus 로고    scopus 로고
    • COMPASS, a histone H3 (lysine 4) methyltransferase required for telomeric silencing of gene expression
    • Krogan NJ, Dover J, Khorrami S, Greenblatt JF, Schneider J, Johnston M, Shilatifard A. 2002. COMPASS, a histone H3 (lysine 4) methyltransferase required for telomeric silencing of gene expression. J Biol Chem 277: 10753-10755. https://doi.org/10.1074/jbc. C200023200
    • (2002) J Biol Chem , vol.277 , pp. 10753-10755
    • Krogan, N.J.1    Dover, J.2    Khorrami, S.3    Greenblatt, J.F.4    Schneider, J.5    Johnston, M.6    Shilatifard, A.7
  • 32
    • 84897073695 scopus 로고    scopus 로고
    • Feedback control of Set1 protein levels is important for proper H3K4 methylation patterns
    • Soares LM, Radman-Livaja M, Lin SG, Rando OJ, Buratowski S. 2014. Feedback control of Set1 protein levels is important for proper H3K4 methylation patterns. Cell Rep 6:961-972. https://doi.org/10.1016/j.celrep.2014.02.017
    • (2014) Cell Rep , vol.6 , pp. 961-972
    • Soares, L.M.1    Radman-Livaja, M.2    Lin, S.G.3    Rando, O.J.4    Buratowski, S.5
  • 34
    • 78649303325 scopus 로고    scopus 로고
    • Splicingdependent RNA polymerase pausing in yeast
    • Alexander RD, Innocente SA, Barrass JD, Beggs JD. 2010. Splicingdependent RNA polymerase pausing in yeast. Mol Cell 40:582-593. https://doi.org/10.1016/j.molcel.2010.11.005
    • (2010) Mol Cell , vol.40 , pp. 582-593
    • Alexander, R.D.1    Innocente, S.A.2    Barrass, J.D.3    Beggs, J.D.4
  • 35
    • 78649289872 scopus 로고    scopus 로고
    • Global analysis of nascent RNA reveals transcriptional pausing in terminal exons
    • Carrillo Oesterreich F, Preibisch S, Neugebauer KM. 2010. Global analysis of nascent RNA reveals transcriptional pausing in terminal exons. Mol Cell 40:571-581. https://doi.org/10.1016/j.molcel.2010.11.004
    • (2010) Mol Cell , vol.40 , pp. 571-581
    • Carrillo Oesterreich, F.1    Preibisch, S.2    Neugebauer, K.M.3
  • 36
    • 84901420191 scopus 로고    scopus 로고
    • Adventures in time and space: splicing efficiency and RNA polymerase II elongation rate
    • Moehle EA, Braberg H, Krogan NJ, Guthrie C. 2014. Adventures in time and space: splicing efficiency and RNA polymerase II elongation rate. RNA Biol 11:313-319. https://doi.org/10.4161/rna.28646
    • (2014) RNA Biol , vol.11 , pp. 313-319
    • Moehle, E.A.1    Braberg, H.2    Krogan, N.J.3    Guthrie, C.4
  • 37
    • 84883377142 scopus 로고    scopus 로고
    • A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs
    • Tuck AC, Tollervey D. 2013. A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs. Cell 154:996-1009. https://doi.org/10.1016/j.cell.2013.07.047
    • (2013) Cell , vol.154 , pp. 996-1009
    • Tuck, A.C.1    Tollervey, D.2
  • 40
    • 78751659330 scopus 로고    scopus 로고
    • Nascent transcript sequencing visualizes transcription at nucleotide resolution
    • Churchman LS, Weissman JS. 2011. Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature 469:368-373. https://doi.org/10.1038/nature09652
    • (2011) Nature , vol.469 , pp. 368-373
    • Churchman, L.S.1    Weissman, J.S.2
  • 44
    • 0038740693 scopus 로고    scopus 로고
    • Tails of intrigue: phosphorylation of RNA polymerase II mediates histone methylation
    • Hampsey M, Reinberg D. 2003. Tails of intrigue: phosphorylation of RNA polymerase II mediates histone methylation. Cell 113:429-432. https://doi.org/10.1016/S0092-8674(03)00360-X
    • (2003) Cell , vol.113 , pp. 429-432
    • Hampsey, M.1    Reinberg, D.2
  • 46
    • 84871889392 scopus 로고    scopus 로고
    • Effects of the Paf1 complex and histone modifications on snoRNA 3=-end formation reveal broad and locus-specific regulation
    • Tomson BN, Crisucci EM, Heisler LE, Gebbia M, Nislow C, Arndt KM. 2013. Effects of the Paf1 complex and histone modifications on snoRNA 3=-end formation reveal broad and locus-specific regulation. Mol Cell Biol 33: 170-182. https://doi.org/10.1128/MCB.01233-12
    • (2013) Mol Cell Biol , vol.33 , pp. 170-182
    • Tomson, B.N.1    Crisucci, E.M.2    Heisler, L.E.3    Gebbia, M.4    Nislow, C.5    Arndt, K.M.6
  • 47
    • 26944479278 scopus 로고    scopus 로고
    • A requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3= end formation
    • Sheldon KE, Mauger DM, Arndt KM. 2005. A requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3= end formation. Mol Cell 20:225-236. https://doi.org/10.1016/j.molcel.2005.08.026
    • (2005) Mol Cell , vol.20 , pp. 225-236
    • Sheldon, K.E.1    Mauger, D.M.2    Arndt, K.M.3
  • 48
    • 84860848751 scopus 로고    scopus 로고
    • Yeast Swd2 is essential because of antagonism between Set1 histone methyltransferase complex and APT (associated with Pta1) termination factor
    • Soares LM, Buratowski S. 2012. Yeast Swd2 is essential because of antagonism between Set1 histone methyltransferase complex and APT (associated with Pta1) termination factor. J Biol Chem 287:15219-15231. https://doi.org/10.1074/jbc. M112.341412
    • (2012) J Biol Chem , vol.287 , pp. 15219-15231
    • Soares, L.M.1    Buratowski, S.2
  • 51
    • 64249111489 scopus 로고    scopus 로고
    • Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5= transcribed regions
    • Kim T, Buratowski S. 2009. Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5= transcribed regions. Cell 137: 259-272. https://doi.org/10.1016/j.cell.2009.02.045
    • (2009) Cell , vol.137 , pp. 259-272
    • Kim, T.1    Buratowski, S.2
  • 52
    • 84866392310 scopus 로고    scopus 로고
    • Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics
    • Kim T, Xu Z, Clauder-Münster S, Steinmetz LM, Buratowski S. 2012. Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics. Cell 150:1158-1169. https://doi.org/10.1016/j.cell.2012.08.016
    • (2012) Cell , vol.150 , pp. 1158-1169
    • Kim, T.1    Xu, Z.2    Clauder-Münster, S.3    Steinmetz, L.M.4    Buratowski, S.5
  • 53
    • 84976892442 scopus 로고    scopus 로고
    • Global analysis of transcriptionally engaged yeast RNA polymerase III reveals extended tRNA transcripts
    • Turowski TW, Leoeniewska E, Delan-Forino C, Sayou C, Boguta M, Tollervey D. 2016. Global analysis of transcriptionally engaged yeast RNA polymerase III reveals extended tRNA transcripts. Genome Res 26: 933-944. https://doi.org/10.1101/gr.205492.116
    • (2016) Genome Res , vol.26 , pp. 933-944
    • Turowski, T.W.1    Leoeniewska, E.2    Delan-Forino, C.3    Sayou, C.4    Boguta, M.5    Tollervey, D.6
  • 54
    • 33745225170 scopus 로고    scopus 로고
    • The delitto perfetto approach to in vivo site-directed mutagenesis and chromosome rearrangements with synthetic oligonucleotides in yeast
    • Storici F, Resnick MA. 2006. The delitto perfetto approach to in vivo site-directed mutagenesis and chromosome rearrangements with synthetic oligonucleotides in yeast. Methods Enzymol 409:329-345. https://doi.org/10.1016/S0076-6879(05)09019-1
    • (2006) Methods Enzymol , vol.409 , pp. 329-345
    • Storici, F.1    Resnick, M.A.2
  • 55
    • 67649854477 scopus 로고    scopus 로고
    • Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs
    • Granneman S, Kudla G, Petfalski E, Tollervey D. 2009. Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs. Proc Natl Acad Sci U S A 106:9613-9618. https://doi.org/10.1073/pnas.0901997106
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 9613-9618
    • Granneman, S.1    Kudla, G.2    Petfalski, E.3    Tollervey, D.4
  • 56
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254. https://doi.org/10.1016/0003-2697(76)90527-3
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 57
    • 80053594862 scopus 로고    scopus 로고
    • A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8 S rRNA maturation by the Rat1 exonuclease
    • Granneman S, Petfalski E, Tollervey D. 2011. A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8 S rRNA maturation by the Rat1 exonuclease. EMBO J 30:4006-4019. https://doi.org/10.1038/emboj.2011.256
    • (2011) EMBO J , vol.30 , pp. 4006-4019
    • Granneman, S.1    Petfalski, E.2    Tollervey, D.3
  • 58
    • 84895493169 scopus 로고    scopus 로고
    • Mapping the miRNA interactome by crosslinking ligation and sequencing of hybrids (CLASH)
    • Helwak A, Tollervey D. 2014. Mapping the miRNA interactome by crosslinking ligation and sequencing of hybrids (CLASH). Nat Protoc 9:711-728. https://doi.org/10.1038/nprot.2014.043
    • (2014) Nat Protoc , vol.9 , pp. 711-728
    • Helwak, A.1    Tollervey, D.2
  • 59
    • 84891669691 scopus 로고    scopus 로고
    • PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast
    • Webb S, Hector RD, Kudla G, Granneman S. 2014. PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast. Genome Biol 15:R8. https://doi.org/10.1186/gb-2014-15-1-r8
    • (2014) Genome Biol , vol.15
    • Webb, S.1    Hector, R.D.2    Kudla, G.3    Granneman, S.4
  • 60
    • 84887224285 scopus 로고    scopus 로고
    • FLEXBAR-flexible barcode and adapter processing for next-generation sequencing platforms
    • Dodt M, Roehr J, Ahmed R, Dieterich C. 2012. FLEXBAR-flexible barcode and adapter processing for next-generation sequencing platforms. Biology 1:895-905. https://doi.org/10.3390/biology1030895
    • (2012) Biology , vol.1 , pp. 895-905
    • Dodt, M.1    Roehr, J.2    Ahmed, R.3    Dieterich, C.4
  • 61
    • 0023286894 scopus 로고
    • Fungal small nuclear ribonucleoproteins share properties with plant and vertebrate U-snRNPs
    • Tollervey D, Mattaj IW. 1987. Fungal small nuclear ribonucleoproteins share properties with plant and vertebrate U-snRNPs. EMBO J 6:469-476
    • (1987) EMBO J , vol.6 , pp. 469-476
    • Tollervey, D.1    Mattaj, I.W.2
  • 62
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. 2013. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 14:R36. https://doi.org/10.1186/gb-2013-14-4-r36
    • (2013) Genome Biol , vol.14
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 65
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love MI, Huber W, Anders S. 2014. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 15:550. https://doi.org/10.1186/s13059-014-0550-8
    • (2014) Genome Biol , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 66
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B Stat Methodol 57:289-300
    • (1995) J R Stat Soc Ser B Stat Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.