Role of carbon source in the shift from oxidative to hydrolytic wood decomposition by Postia placenta

Fungal Genetics and Biology

Volumn 106, Issue , 2017, Pages 1-8

  Zhang, Jiwei ^a   Schilling, Jonathan S ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Bioenergy; Brown rot; Decomposition; Gene regulation; Wood decay

Indexed keywords

CELLOBIOSE; CELLULOSE; GLUCOSE; GLYCOSIDASE; MANNOSE; OXIDOREDUCTASE; XYLOSE; CELLULASE; HEMICELLULASE; MONOSACCHARIDE;

AOX1 GENE; ARTICLE; CARBON SOURCE; CONTROLLED STUDY; CRO5 GENE; DECOMPOSITION; DOWN REGULATION; FUNCTIONAL GENOMICS; FUNGAL GENE; GENE EXPRESSION REGULATION; GENE REPRESSION; HEMICELLULASE GENE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HYDROLYTIC WOOD DECOMPOSITION; LCC1 GENE; NONHUMAN; OXIDATIVE WOOD DECOMPOSITION; POSTIA PLACENTA; PRIORITY JOURNAL; PROTEIN EXPRESSION; QRD1 GENE; SOLUBILIZATION; SPRUCE; TRANSCRIPTION REGULATION; UPREGULATION; CORIOLACEAE; ENZYMOLOGY; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETICS; GROWTH, DEVELOPMENT AND AGING; HYDROLYSIS; METABOLISM; MICROBIOLOGY; OXIDATION REDUCTION REACTION; WOOD;

CELLULASES; CELLULOSE; CORIOLACEAE; DOWN-REGULATION; GENE EXPRESSION; GENE EXPRESSION PROFILING; GLYCOSIDE HYDROLASES; HYDROLYSIS; MONOSACCHARIDES; OXIDATION-REDUCTION; OXIDOREDUCTASES; UP-REGULATION; WOOD;

EID: 85021660468     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2017.06.003     Document Type: Article

References (51)

1. Amore, A., Giacobbe, S., Faraco, V., Regulation of cellulase and hemicellulase gene expression in fungi. Curr. Genomics 14 (2013), 230–249.
2. ASTM Standard D1413-07e1, Standard Test Method for Wood Preservatives by Laboratory Soil-Block Cultures. 2007, ASTM International, West Conshohocken, PA.
3. Baldrian, P., Valaskova, V., Degradation of cellulose by basidiomycetous fungi. FEMS Microbiol. Rev. 32 (2008), 501–521.
4. Cohen, R., Suzuki, M.R., Hammel, K.E., Processive endoglucanase active in crystalline cellulose hydrolysis by the brown rot basidiomycete Gloeophyllum trabeum. Appl. Environ. Microbiol. 71 (2005), 2412–2417.
5. Coradetti, S.T., Craig, J.P., Xiong, Y., Shock, T., Tian, C., Glass, N.L., Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi. Proc. Natl. Acad. Sci. U.S.A. 2012:109 (2012), 7397–7402.
6. Cotoras, M., Agosin, E., Regulatory aspects of endoglucanase production by the brown-rot fungus Gloeophyllum trabeum. Exp. Mycol. 16 (1992), 253–260.
7. Cowling, E.B., Comparative Biochemistry of the Decay of Sweetgum Sapwood by White-rot and Brown-rot Fungi. Technical Bulletin No. 1258, 1961, U.S. Department of Agriculture, Washington, DC.
8. 2 in brown rot decay of wood. Appl. Environ. Microbiol. 73 (2007), 6241–6253.
9. Daniel, G., 2014. Fungal and bacterial biodegradation: white rots, brown rots, soft rots, and bacteria. In: Schultz et al. (Eds.), Deterioration and Protection of Sustainable Biomaterials. ACS Symposium Series. American Chemical Society, Washington, DC.
10. Fissore, A., Carrasco, L., Reyes, P., Rodríguez, J., Freer, J., Mendonça, R.T., Evaluation of a combined brown rot decay-chemical delignification process as a pretreatment for bioethanol production from Pinus radiata wood chips. J. Ind. Microbiol. 37 (2010), 893–900.
11. Floudas, D., Binder, M., Riley, R., Barry, K., Blanchette, R.A., et al. The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336 (2012), 1715–1719.
12. Flournoy, D.S., Kirk, T.K., Highley, T.L., Wood decay by brown-rot fungi: changes in pore structure and cell wall volume. Holzforschung 45 (1991), 383–388.
13. Gao, Z., Mori, T., Kondo, R., The pretreatment of corn stover with Gloeophyllum trabeum KU-41 for enzymatic hydrolysis. Biotechnol. Biofuels, 5, 2012, 28.
14. Gaskell, J., Blanchette, R.A., Stewart, P.E., BonDurant, S.S., Adams, M., Sabat, G., Kersten, P., Cullen, D., Transcriptome and secretome analyses of the wood decay fungus Wolfiporia cocos support alternative mechanisms of lignocellulose conversion. Appl. Environ. Microbiol. 82 (2016), 3979–3987.
15. Glass, N.L., Schmoll, M., Cate, J.H.D., Coradetti, S., Plant cell wall deconstruction by ascomycete fungi. Annu. Rev. Microbiol. 67 (2013), 477–498.
16. Goodell, B., Qian, Y., Jellison, J., 2008. Fungal decay of wood: soft rot-brown rot-white rot. In: Schultz, T. et al. (Eds.), Development of Commercial Wood Preservatives. ACS Symposium Series. American Chemical Society, Washington, DC, pp. 9–31.
17. Hammel, K.E., Kapich, A.N., Jensen, K.A., Ryan, Z.C., Reactive oxygen species as agents of wood decay by fungi. Enzyme Microb. Technol. 30 (2002), 445–453.
18. Highley, T.L., Influence of carbon source on cellulase activity of white-rot and brown-rot fungi. Wood Fiber 5 (1973), 50–58.
19. Hori, C., Gaskell, J., Igarashi, K., Samejima, M., Hibbett, D., Henrissat, B., Cullen, D., Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot polyporales provides insight into mechanisms of wood decay. Mycologia 105 (2013), 1412–1427.
20. 2 production by Phanerochaete chrysosporium. J. Bacteriol. 169 (1987), 2195–2201.
21. Kersten, P., Cullen, D., Copper radical oxidases and related extracellular oxidoreductases of wood-decay Agaricomycetes. Fungal Genet. Biol. 72 (2014), 124–130.
22. Kleman-Leyer, K., Kirk, T.K., Changes in the molecular size distribution of cellulose during attack by white-rot and brown-rot fungi. Appl. Environ. Microbiol. 58 (1992), 1266–1270.
23. Korripally, P., Timokhin, V.I., Houtman, C.J., Mozuch, M.D., Hammel, K.E., Evidence from Serpula lacrymans that 2,5-dimethoxyhydroquinone is a lignocellulolytic agent of divergent brown rot basidiomycetes. Appl. Environ. Microbiol. 79 (2013), 2377–2383.
24. Kuuskeri, J., Häkkinen, M., Laine, P., Smolander, O.P., Tamene, F., et al. Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose. Biotechnol. Biofuels, 9, 2016, 192.
25. Li, Z., Yao, G., Wu, R., Gao, L., Kan, Q., et al. Synergistic and dose-controlled regulation of cellulase gene expression in Penicillium oxalicum. PLoS Genet., 11, 2015, e1005509.
26. Martinez, D., Challacombe, J., Morgenstern, I., Hibbett, D., Schmoll, M., et al. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc. Natl. Acad. Sci. U.S.A. 106 (2009), 1954–1959.
27. Monrroy, M., Ortega, I., Ramírez, M., Baeza, J., Freer, J., Structural change in wood by brown rot fungi and effect on enzymatic hydrolysis. Enzyme Microb. Technol. 49 (2011), 472–477.
28. Murray, W.D., Duff, S.J.B., Lanthier, P.H., Induction and stability of alcohol oxidase in the methylotrophic yeast Pichia pastoris. Appl. Microbiol. Biotechnol. 32 (1989), 95–100.
29. Peterson, R., Nevalainen, H., Trichoderma reesei RUT-C30 – thirty years of strain improvement. Microbiology 158 (2012), 58–68.
30. Presley, G.N., Schilling, J.S., Distinct growth and secretome strategies for two taxonomically divergent brown rot fungi. Appl. Environ. Microbiol., 83(7), 2017 pii: e02987–16.
31. Ray, M.J., Leak, D.J., Spanu, P.D., Murphy, R.J., Brown rot fungal early stage decay mechanism as a biological pretreatment for softwood biomass in biofuel production. Biomass Bioenerg. 34 (2010), 1257–1262.
32. Riley, R., Salamov, A.A., Brown, D.W., Nagy, L.G., Floudas, D., et al. Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. Proc. Natl. Acad. Sci. U.S.A. 111 (2014), 9923–9928.
33. Ritschkoff, A.C., Rättö, M., Buchert, J., Viikari, L., Effect of carbon source on the production of oxalic acid and hydrogen peroxide by brown-rot fungus Poria placenta. J. Biotechnol. 40 (1995), 179–186.
34. Ryu, J.S., Shary, S., Houtman, C.J., Panisko, E.A., Korripally, P., et al. Proteomic and functional analysis of the cellulase system expressed by Postia placenta during brown rot of solid wood. Appl. Environ. Microbiol. 77 (2011), 7933–7941.
35. Schilling, J.S., Ai, J., Blanchette, R.A., Duncan, S.M., Filley, T.R., Tschirner, U.W., Lignocellulose modifications by brown rot fungi and their effects, as pretreatments, on cellulolysis. Biores. Technol. 116 (2012), 147–154.
36. Schilling, J.S., Duncan, S.M., Presley, G.N., Jurgens, J.A., Blanchette, R.A., Colocalizing incipient reactions in wood degraded by the brown rot fungus Postia placenta. Int. Biodeterior. Biodegrad. 83 (2013), 56–62.
37. Schilling, J.S., Kaffenberger, J.T., Liew, F.J., Song, Z., Signature wood modifications that reveal decomposer community history. PLoS ONE, 10, 2015, e0120679.
38. Schmittgen, T.D., Livak, K.J., Analyzing real-time PCR data by the comparative C(T) method. Nat. Protoc. 3 (2008), 1101–1108.
39. Stricker, A.R., Grosstessner-Hain, K., Würleitner, E., Mach, R.L., Xyr1 (xylanase regulator 1) regulates both the hydrolytic enzyme system and D-xylose metabolism in Hypocrea jecorina. Eukaryot. Cell 5 (2006), 2128–2137.
40. Stricker, A.R., Mach, R.L., de Graaff, L.H., Regulation of transcription of cellulases- and hemicellulases-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei). Appl. Microbiol. Biotechnol. 78 (2008), 211–220.
41. Sun, J., Glass, N.L., Identification of the CRE-1 cellulolytic regulon in Neurospora crassa. PLoS ONE, 6, 2011, e25654.
42. Suzuki, M.R., Hunt, C.G., Houtman, C.J., Dalebroux, Z.D., Hammel, K.E., Fungal hydroquinones contribute to brown rot of wood. Environ. Microbiol. 8 (2006), 2214–2223.
43. Suzuki, H., Igarashi, K., Samejima, M., Cellotriose and cellotetraose as inducers of the genes encoding cellobiohydrolases in the basidiomycete Phanerochaete chrysosporium. Appl. Environ. Microbiol. 76 (2010), 6164–6170.
44. Vanden Wymelenberg, A., Gaskell, J., Mozuch, M., Kersten, P., Sabat, G., et al. Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression. Appl. Environ. Microbiol. 75 (2009), 4058–4068.
45. Vanden Wymelenberg, A., Gaskell, J., Mozuch, M., Sabat, G., Ralph, J., et al. Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium. Appl. Environ. Microbiol. 76 (2010), 3599–3610.
46. Vanden Wymelenberg, A., Gaskell, J., Mozuch, M., BonDurant, S.S., Sabat, G., et al. Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species. Appl. Environ. Microbiol. 77 (2011), 4499–4507.
47. van Munster, J.M., Daly, P., Delmas, S., Pullan, S.T., Blythe, M.J., et al. The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger. Fungal Genet. Biol. 72 (2014), 34–47.
48. Wei, D.S., Houtman, C.J., Kapich, A.N., Hunt, C.G., Cullen, D., Hammel, K.E., Laccase and its role in production of extracellular reactive oxygen species during wood decay by the brown rot basidiomycete Postia placenta. Appl. Environ. Microbiol. 76 (2010), 2091–2097.
49. Zhang, J., Presley, G.N., Hammel, K.E., Ryu, J.S., Menke, J.R., Figueroa, M., Hu, D., Orr, G., Schilling, J.S., Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta. Proc. Natl. Acad. Sci. U.S.A. 113 (2016), 10968–10973.
50. Zhang, W., Kou, Y., Xu, J., Cao, Y., Zhao, G., et al. Two major facilitator superfamily sugar transporters from Trichoderma reesei and their roles in induction of cellulase biosynthesis. J. Biol. Chem. 288 (2013), 32861–32872.
51. Znameroski, E.A., Li, X., Tsai, J.C., Galazka, J.M., Glass, N.L., Cate, J.H., Evidence for transceptor function of cellodextrin transporters in Neurospora crassa. J. Biol. Chem. 289 (2014), 2610–2619.