-
1
-
-
84881263143
-
Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses
-
Allers E, Moraru C, Duhaime MB, Beneze E, Solonenko N, Barrero-Canosa J, Amann R, Sullivan MB. 2013. Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses. Environ- mental Microbiology 15(8):2306-2318 DOI 10.1111/1462-2920.12100.
-
(2013)
Environ- mental Microbiology
, vol.15
, Issue.8
, pp. 2306-2318
-
-
Allers, E.1
Moraru, C.2
Duhaime, M.B.3
Beneze, E.4
Solonenko, N.5
Barrero-Canosa, J.6
Amann, R.7
Sullivan, M.B.8
-
2
-
-
84872906004
-
Diversity and population structure of marine group A bacteria in the northeast sub- arctic pacific ocean
-
Allers E, Wright JJ, Konwar KM, Howes CG, Beneze E, Hallam SJ, Sullivan MB. 2013. Diversity and population structure of marine group A bacteria in the northeast sub- arctic pacific ocean. The ISME Journal 7(2):256-268 DOI 10.1038/ismej.2012.108.
-
(2013)
The ISME Journal
, vol.7
, Issue.2
, pp. 256-268
-
-
Allers, E.1
Wright, J.J.2
Konwar, K.M.3
Howes, C.G.4
Beneze, E.5
Hallam, S.J.6
Sullivan, M.B.7
-
3
-
-
84900502880
-
Sulfur oxidation genes in diverse deep-sea viruses
-
Anantharaman K, Duhaime MB, Breier JA, Wendt KA, Toner BM, Dick GJ. 2014. Sulfur oxidation genes in diverse deep-sea viruses. Science 344(6185):757-761 DOI 10.1126/science.1252229.
-
(2014)
Science
, vol.344
, Issue.6185
, pp. 757-761
-
-
Anantharaman, K.1
Duhaime, M.B.2
Breier, J.A.3
Wendt, K.A.4
Toner, B.M.5
Dick, G.J.6
-
4
-
-
84899490286
-
Phage infection of an environmen- tally relevant marine bacterium alters host metabolism and lysate composition
-
Ankrah NYD, May AL, Middleton JL, Jones DR, Hadden MK, Gooding JR, LeCleir GR, Wilhelm SW, Campagna SR, Buchan A. 2014. Phage infection of an environmen- tally relevant marine bacterium alters host metabolism and lysate composition. The ISME Journal 8(5):1089-1100 DOI 10.1038/ismej.2013.216.
-
(2014)
The ISME Journal
, vol.8
, Issue.5
, pp. 1089-1100
-
-
Ankrah, N.Y.D.1
May, A.L.2
Middleton, J.L.3
Jones, D.R.4
Hadden, M.K.5
Gooding, J.R.6
LeCleir, G.R.7
Wilhelm, S.W.8
Campagna, S.R.9
Buchan, A.10
-
5
-
-
80054098909
-
Abundance and phylogenetic identity of archaeo- plankton in the permanent oxygen minimum zone of the eastern tropical South Pa- cific
-
Belmar L, Molina V, Ulloa O. 2011. Abundance and phylogenetic identity of archaeo- plankton in the permanent oxygen minimum zone of the eastern tropical South Pa- cific. FEMS Microbiology Ecology 78(2):314-326 DOI 10.1111/j.1574-6941.2011.01159.x.
-
(2011)
FEMS Microbiology Ecology
, vol.78
, Issue.2
, pp. 314-326
-
-
Belmar, L.1
Molina, V.2
Ulloa, O.3
-
6
-
-
77957729177
-
Early evolution of photosynthesis 1
-
Blankenship RE. 2010. Early evolution of photosynthesis 1. Plant Physiology 154:434-438 DOI 10.1104/pp.110.161687.
-
(2010)
Plant Physiology
, vol.154
, pp. 434-438
-
-
Blankenship, R.E.1
-
7
-
-
84978531930
-
iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure
-
Bolduc B, Youens-Clark K, Roux S, Hurwitz BL, Sullivan MB. 2016. iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure. The ISME Journal 11:7-14 DOI 10.1038/ismej.2016.89.
-
(2016)
The ISME Journal
, vol.11
, pp. 7-14
-
-
Bolduc, B.1
Youens-Clark, K.2
Roux, S.3
Hurwitz, B.L.4
Sullivan, M.B.5
-
8
-
-
84905049901
-
Trimmomatic: a flexible trimmer for illumina se- quence data
-
Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for illumina se- quence data. Bioinformatics 30(15):2114-2120 DOI 10.1093/bioinformatics/btu170.
-
(2014)
Bioinformatics
, vol.30
, Issue.15
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
9
-
-
84929998256
-
Patterns and ecological drivers of ocean viral communities
-
Brum JR, Ignacio-espinoza JC, Roux S, Doulcier G, Acinas SG, Alberti A, Chaffron S. 2015. Patterns and ecological drivers of ocean viral communities. Science 348(6237):1-10 DOI 10.1126/science.1261498.
-
(2015)
Science
, vol.348
, Issue.6237
, pp. 1-10
-
-
Brum, J.R.1
Ignacio-espinoza, J.C.2
Roux, S.3
Doulcier, G.4
Acinas, S.G.5
Alberti, A.6
Chaffron, S.7
-
10
-
-
84923568014
-
Rising to the challenge: accelerated pace of discov- ery transforms marine virology
-
Brum JR, Sullivan MB. 2015. Rising to the challenge: accelerated pace of discov- ery transforms marine virology. Nature Reviews Microbiology 13(3):147-159 DOI 10.1038/nrmicro3404.
-
(2015)
Nature Reviews Microbiology
, vol.13
, Issue.3
, pp. 147-159
-
-
Brum, J.R.1
Sullivan, M.B.2
-
11
-
-
44349124497
-
Evidence for the intense exchange of mazg in marine cyanophages by horizontal gene transfer
-
Bryan MJ, Burroughs NJ, Spence EM, Clokie MRJ, Mann NH, Bryan SJ. 2008. Evidence for the intense exchange of mazg in marine cyanophages by horizontal gene transfer. PLOS ONE 3(4):1-12 DOI 10.1371/journal.pone.0002048.
-
(2008)
PLOS ONE
, vol.3
, Issue.4
, pp. 1-12
-
-
Bryan, M.J.1
Burroughs, N.J.2
Spence, E.M.3
Clokie, M.R.J.4
Mann, N.H.5
Bryan, S.J.6
-
12
-
-
77957744758
-
REVIEW the evolution and future of earth's nitrogen cycle
-
Canfield DE, Glazer AN, Falkowski PG. 2010. REVIEW the evolution and future of earth's nitrogen cycle. Science 330:192-196 DOI 10.1126/science.1186120.
-
(2010)
Science
, vol.330
, pp. 192-196
-
-
Canfield, D.E.1
Glazer, A.N.2
Falkowski, P.G.3
-
13
-
-
77952243141
-
Correspondence QIIME allows analysis of high- throughput community sequencing data intensity normalization improves color calling in SOLiD sequencing
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich AG, Gordon JI, Huttley G, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, Mcdonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld JRR, Knight R. 2010. Correspondence QIIME allows analysis of high- throughput community sequencing data intensity normalization improves color calling in SOLiD sequencing. Nature 7(5):335-336.
-
(2010)
Nature
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, A.G.9
Gordon, J.I.10
Huttley, G.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
Mcdonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.R.R.26
Knight, R.27
more..
-
14
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R. 2011. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proceedings of the National Academy of Sciences of the United States of America 108:4516-4522 DOI 10.1073/pnas.1000080107.
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, pp. 4516-4522
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Lozupone, C.A.5
Turnbaugh, P.J.6
Fierer, N.7
Knight, R.8
-
15
-
-
84867985452
-
Oxygen minimum zones harbour novel viral communities with low diversity
-
Cassman N, Prieto-Davó A, Walsh K, Silva GGZ, Angly F, Akhter S, Barott K, Busch J, McDole T, Haggerty JM, Willner D, Alarcón G, Ulloa O, DeLong EF, Dutilh BE, Rohwer F, Dinsdale EA. 2012. Oxygen minimum zones harbour novel viral communities with low diversity. Environmental Microbiology 14(11):3043-3065 DOI 10.1111/j.1462-2920.2012.02891.x.
-
(2012)
Environmental Microbiology
, vol.14
, Issue.11
, pp. 3043-3065
-
-
Cassman, N.1
Prieto-Davó, A.2
Walsh, K.3
Silva, G.G.Z.4
Angly, F.5
Akhter, S.6
Barott, K.7
Busch, J.8
McDole, T.9
Haggerty, J.M.10
Willner, D.11
Alarcón, G.12
Ulloa, O.13
DeLong, E.F.14
Dutilh, B.E.15
Rohwer, F.16
Dinsdale, E.A.17
-
16
-
-
84930934606
-
Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions
-
Chow CET, Winget DM, White RA, Hallam SJ, Suttle CA. 2015. Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions. Frontiers in Microbiology 6:1-15 DOI 10.3389/fmicb.2015.00265.
-
(2015)
Frontiers in Microbiology
, vol.6
, pp. 1-15
-
-
Chow, C.E.T.1
Winget, D.M.2
White, R.A.3
Hallam, S.J.4
Suttle, C.A.5
-
17
-
-
22544470014
-
War is peace-dispatches from the bacterial and phage killing fields
-
Comeau AM, Krisch HM. 2005. War is peace-dispatches from the bacterial and phage killing fields. Current Opinion in Microbiology 8(4):488-494 DOI 10.1016/j.mib.2005.06.004.
-
(2005)
Current Opinion in Microbiology
, vol.8
, Issue.4
, pp. 488-494
-
-
Comeau, A.M.1
Krisch, H.M.2
-
18
-
-
85040083169
-
Virus-mediated archaeal hecatomb in the deep seafloor
-
Danovaro R, Dell'Anno A, Corinaldesi C, Rastelli E, Cavicchioli R, Krupovic M, Noble RT, Nunoura T, Prangishvili D. 2016. Virus-mediated archaeal hecatomb in the deep seafloor. Science Advances 2(10):1-10 DOI 10.1126/sciadv.1600492.
-
(2016)
Science Advances
, vol.2
, Issue.10
, pp. 1-10
-
-
Danovaro, R.1
Dell'Anno, A.2
Corinaldesi, C.3
Rastelli, E.4
Cavicchioli, R.5
Krupovic, M.6
Noble, R.T.7
Nunoura, T.8
Prangishvili, D.9
-
19
-
-
85017028734
-
Archaeal viruses: diversity, replication, and structure
-
Dellas N, Snyder JC, Bolduc B, Young MJ. 2014. Archaeal viruses: diversity, replication, and structure. Annual Review of Virology 1:399-426 DOI 10.1146/annurev-virology-031413-085357.
-
(2014)
Annual Review of Virology
, vol.1
, pp. 399-426
-
-
Dellas, N.1
Snyder, J.C.2
Bolduc, B.3
Young, M.J.4
-
20
-
-
85009962515
-
Viral interference of the bacterial RNA metabolism machinery
-
Dendooven T, Van den Bossche A, Hendrix H, Ceyssens P-J, Voe M, Bandyra KJ, De Maeyer M, Aertsen A, Noben J-P, Hardwick SW, Luisi BF, Lavigne R. 2016. Viral interference of the bacterial RNA metabolism machinery. RNA Biology 14(1):6-10 DOI 10.1080/15476286.2016.1251003.
-
(2016)
RNA Biology
, vol.14
, Issue.1
, pp. 6-10
-
-
Dendooven, T.1
Van den Bossche, A.2
Hendrix, H.3
Ceyssens, P.-J.4
Voe, M.5
Bandyra, K.J.6
De Maeyer, M.7
Aertsen, A.8
Noben, J.-P.9
Hardwick, S.W.10
Luisi, B.F.11
Lavigne, R.12
-
21
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL. 2006. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Micro- biology 72(7):5069-5072 DOI 10.1128/AEM.03006-05.
-
(2006)
Applied and Environmental Micro- biology
, vol.72
, Issue.7
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
22
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinfor- matics 26(19):2460-2461 DOI 10.1093/bioinformatics/btq461.
-
(2010)
Bioinfor- matics
, vol.26
, Issue.19
, pp. 2460-2461
-
-
Edgar, R.C.1
-
23
-
-
84899469298
-
New ap- proaches indicate constant viral diversity despite shifts in assemblage structure in an Australian Hypersaline Lake
-
Emerson JB, Thomas BC, Andrade K, Heidelberg KB, Banfield JF. 2013. New ap- proaches indicate constant viral diversity despite shifts in assemblage structure in an Australian Hypersaline Lake. Applied and Environmental Microbiology 79(21):6754-6764 DOI 10.1128/AEM.01946-13.
-
(2013)
Applied and Environmental Microbiology
, vol.79
, Issue.21
, pp. 6754-6764
-
-
Emerson, J.B.1
Thomas, B.C.2
Andrade, K.3
Heidelberg, K.B.4
Banfield, J.F.5
-
24
-
-
84891782659
-
Pfam: the protein families database
-
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer ELL, Tate J, Punta M. 2014. Pfam: the protein families database. Nucleic Acids Research 42(D1):D222-D230 DOI 10.1093/nar/gkt1223.
-
(2014)
Nucleic Acids Research
, vol.42
, Issue.1
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
Heger, A.7
Hetherington, K.8
Holm, L.9
Mistry, J.10
Sonnhammer, E.L.L.11
Tate, J.12
Punta, M.13
-
25
-
-
26844541457
-
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
-
Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB. 2005. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proceedings of the National Academy of Sciences of the United States of America 102(41):14683-14688 DOI 10.1073/pnas.0506625102.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.41
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
26
-
-
32844465575
-
Proteorhodopsin lat- eral gene transfer between marine planktonic bacteria and archaea
-
Frigaard N-U, Martinez A, Mincer TJ, DeLong EF. 2006. Proteorhodopsin lat- eral gene transfer between marine planktonic bacteria and archaea. Nature 439(7078):847-850 DOI 10.1038/nature04435.
-
(2006)
Nature
, vol.439
, Issue.7078
, pp. 847-850
-
-
Frigaard, N.-U.1
Martinez, A.2
Mincer, T.J.3
DeLong, E.F.4
-
27
-
-
84870431038
-
CD-HIT: accelerated for clustering the next- generation sequencing data
-
Fu L, Niu B, Zhu Z, Wu S, Li W. 2012. CD-HIT: accelerated for clustering the next- generation sequencing data. Bioinformatics 28(23):3150-3152 DOI 10.1093/bioinformatics/bts565.
-
(2012)
Bioinformatics
, vol.28
, Issue.23
, pp. 3150-3152
-
-
Fu, L.1
Niu, B.2
Zhu, Z.3
Wu, S.4
Li, W.5
-
28
-
-
0033542481
-
Marine viruses and their biogeochemical and ecological effects
-
Fuhrman JA. 1999. Marine viruses and their biogeochemical and ecological effects. Nature 399(6736):541-548 DOI 10.1038/21119.
-
(1999)
Nature
, vol.399
, Issue.6736
, pp. 541-548
-
-
Fuhrman, J.A.1
-
29
-
-
84947617917
-
Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone
-
Ganesh S, Bristow LA, Larsen M, Sarode N, Thamdrup B, Stewart FJ. 2015. Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone. The ISME Journal 9:2682-2696 DOI 10.1038/ismej.2015.44.
-
(2015)
The ISME Journal
, vol.9
, pp. 2682-2696
-
-
Ganesh, S.1
Bristow, L.A.2
Larsen, M.3
Sarode, N.4
Thamdrup, B.5
Stewart, F.J.6
-
30
-
-
0038377425
-
PAV1, the first virus-like particle isolated from a hyperthermophilic euryarchaeote, `Pyrococcus Abyssi'
-
Geslin C, Le Romancer M, Erauso G, Gaillard M, Perrot G, Prieur D. 2003. PAV1, the first virus-like particle isolated from a hyperthermophilic euryarchaeote, `Pyrococcus Abyssi'. Journal of Bacteriology 185(13):3888-3894 DOI 10.1128/JB.185.13.3888-3894.2003.
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.13
, pp. 3888-3894
-
-
Geslin, C.1
Le Romancer, M.2
Erauso, G.3
Gaillard, M.4
Perrot, G.5
Prieur, D.6
-
31
-
-
84856567690
-
TPV1, the first virus iso- lated from the hyperthermophilic genus Thermococcus
-
Gorlas A, Koonin E V, Bienvenu N, Prieur D, Geslin C. 2012. TPV1, the first virus iso- lated from the hyperthermophilic genus Thermococcus. Environmental Microbiology 14(2):503-516 DOI 10.1111/j.1462-2920.2011.02662.x.
-
(2012)
Environmental Microbiology
, vol.14
, Issue.2
, pp. 503-516
-
-
Gorlas, A.1
Koonin, E.V.2
Bienvenu, N.3
Prieur, D.4
Geslin, C.5
-
32
-
-
84878548074
-
Living side by side with a virus: char- acterization of two novel plasmids from Thermococcus Prieurii, a host for the spindle- shaped virus TPV1
-
Gorlas A, Krupovic M, Forterre P, Geslin C. 2013. Living side by side with a virus: char- acterization of two novel plasmids from Thermococcus Prieurii, a host for the spindle- shaped virus TPV1. Applied and Environmental Microbiology 79(12):3822-3828 DOI 10.1128/AEM.00525-13.
-
(2013)
Applied and Environmental Microbiology
, vol.79
, Issue.12
, pp. 3822-3828
-
-
Gorlas, A.1
Krupovic, M.2
Forterre, P.3
Geslin, C.4
-
33
-
-
84961057176
-
Plankton networks driving carbon export in the oligotrophic ocean
-
Guidi L, Chaffron S, Bittner L, Eveillard D, Larhlimi A, Roux S, Darzi Y, Audic S, Berline L, Brum JR, Coelho LP, Espinoza JCI, Malviya S, Sunagawa S, Dimier C, Kandels-Lewis S, Picheral M, Poulain J, Searson S, Tara Oceans Consortium Coordinators, Stemmann L, Not F, Hingamp P, Speich S, Follows M, Karp-Boss L, Boss E, Ogata H, Pesant S, Weissenbach J, Wincker P, Acinas SG, Bork P, De Vargas C, Iudicone D, Sullivan MB, Raes J, Karsenti E, Bowler C, Gorsky G. 2016. Plankton networks driving carbon export in the oligotrophic ocean. Nature 532(7600):465-470 DOI 10.1038/nature16942.
-
(2016)
Nature
, vol.532
, Issue.7600
, pp. 465-470
-
-
Guidi, L.1
Chaffron, S.2
Bittner, L.3
Eveillard, D.4
Larhlimi, A.5
Roux, S.6
Darzi, Y.7
Audic, S.8
Berline, L.9
Brum, J.R.10
Coelho, L.P.11
Espinoza, J.C.I.12
Malviya, S.13
Sunagawa, S.14
Dimier, C.15
Kandels-Lewis, S.16
Picheral, M.17
Poulain, J.18
Searson, S.19
Tara Oceans Consortium, Coordinators.20
Stemmann, L.21
Not, F.22
Hingamp, P.23
Speich, S.24
Follows, M.25
Karp-Boss, L.26
Boss, E.27
Ogata, H.28
Pesant, S.29
Weissenbach, J.30
Wincker, P.31
Acinas, S.G.32
Bork, P.33
De Vargas, C.34
Iudicone, D.35
Sullivan, M.B.36
Raes, J.37
Karsenti, E.38
Bowler, C.39
Gorsky, G.40
more..
-
34
-
-
84905639696
-
Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen mini- mum zone microbes
-
Hawley AK, Brewer HM, Norbeck AD, Paša-Tolic L, Hallam SJ. 2014. Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen mini- mum zone microbes. Proceedings of the National Academy of Sciences of the United States of America 111(31):11395-11400 DOI 10.1073/pnas.1322132111.
-
(2014)
Proceedings of the National Academy of Sciences of the United States of America
, vol.111
, Issue.31
, pp. 11395-11400
-
-
Hawley, A.K.1
Brewer, H.M.2
Norbeck, A.D.3
Paša-Tolì, L.4
Hallam, S.J.5
-
35
-
-
84887380143
-
Metabolic reprogramming by viruses in the sunlit and dark ocean
-
Hurwitz BL, Hallam SJ, Sullivan MB. 2013. Metabolic reprogramming by viruses in the sunlit and dark ocean. Genome Biology 14:R123 DOI 10.1186/gb-2013-14-11-r123.
-
(2013)
Genome Biology
, vol.14
, pp. R123
-
-
Hurwitz, B.L.1
Hallam, S.J.2
Sullivan, M.B.3
-
36
-
-
84962854177
-
Viral metabolic reprogramming in marine ecosystems
-
Hurwitz BL, U'Ren JM. 2016. Viral metabolic reprogramming in marine ecosystems. Current Opinion in Microbiology 31:161-168 DOI 10.1016/j.mib.2016.04.002.
-
(2016)
Current Opinion in Microbiology
, vol.31
, pp. 161-168
-
-
Hurwitz, B.L.1
U'Ren, J.M.2
-
37
-
-
84864387036
-
Phylogenomics of T4 cyanophages: lateral gene transfer in the `core' and origins of host genes
-
Ignacio-Espinoza JC, Sullivan MB. 2012. Phylogenomics of T4 cyanophages: lateral gene transfer in the `core' and origins of host genes. Environmental Microbiology 14:2113-2126 DOI 10.1111/j.1462-2920.2012.02704.x.
-
(2012)
Environmental Microbiology
, vol.14
, pp. 2113-2126
-
-
Ignacio-Espinoza, J.C.1
Sullivan, M.B.2
-
38
-
-
84856659328
-
Untangling genomes from metagenomes: revealing an uncultured class of marine euryarchaeota
-
Iverson V, Morris RM, Frazar CD, Berthiaume CT, Morales RL, Armbrust EV. 2012. Untangling genomes from metagenomes: revealing an uncultured class of marine euryarchaeota. Science 335(6068):587-590 DOI 10.1126/science.1212665.
-
(2012)
Science
, vol.335
, Issue.6068
, pp. 587-590
-
-
Iverson, V.1
Morris, R.M.2
Frazar, C.D.3
Berthiaume, C.T.4
Morales, R.L.5
Armbrust, E.V.6
-
39
-
-
84941761213
-
Aerobic microbial respiration in oceanic oxygen minimum zones
-
Kalvelage T, Lavik G, Jensen MM, Revsbech NP, Löscher C, Schunck H, Desai DK, Hauss H, Kiko R, Holtappels M, Laroche J, Schmitz RA, Graco MI, Kuypers MMM. 2015. Aerobic microbial respiration in oceanic oxygen minimum zones. PLOS ONE 10(7):1-17 DOI 10.1371/journal.pone.0133526.
-
(2015)
PLOS ONE
, vol.10
, Issue.7
, pp. 1-17
-
-
Kalvelage, T.1
Lavik, G.2
Jensen, M.M.3
Revsbech, N.P.4
Löscher, C.5
Schunck, H.6
Desai, D.K.7
Hauss, H.8
Kiko, R.9
Holtappels, M.10
Laroche, J.11
Schmitz, R.A.12
Graco, M.I.13
Kuypers, M.M.M.14
-
40
-
-
84875619226
-
Archaeal dominance in the mesopelagic zone of the Pacific O
-
Karner MB, DeLong EF, Karl DM. 2001. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409:507-510 DOI 10.1038/35054051. Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30(4):772-780 DOI 10.1093/molbev/mst010.
-
(2001)
Nature 409:507-510 DOI 10.1038/35054051. Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution
, vol.30
, Issue.4
, pp. 772-780
-
-
Karner, M.B.1
DeLong, E.F.2
Karl, D.M.3
-
41
-
-
84894247843
-
-
Elsevier, 1-1327. Kolde AR 2015. Package Pheatmap 1.0.8
-
King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds.) 2012. Virus taxonomy, ninth report of the international committee on taxonomy of viruses. Elsevier, 1-1327. Kolde AR. 2015. ``Package Pheatmap 1.0.8''. 1-7.
-
(2012)
Virus taxonomy, ninth report of the international committee on taxonomy of viruses
, pp. 1-7
-
-
King, A.M.Q.1
Adams, M.J.2
Carstens, E.B.3
Lefkowitz, E.J.4
-
42
-
-
84927693101
-
Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities
-
Koskella B, Brockhurst MA. 2014. Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities. FEMS Microbiology Reviews 38(5):916-931 DOI 10.1111/1574-6976.12072.
-
(2014)
FEMS Microbiology Reviews
, vol.38
, Issue.5
, pp. 916-931
-
-
Koskella, B.1
Brockhurst, M.A.2
-
43
-
-
84884251320
-
Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon se- quence data on the miseq illumina sequencing platform
-
Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. 2013. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon se- quence data on the miseq illumina sequencing platform. Applied and Environmental Microbiology 79(17):5112-5120 DOI 10.1128/AEM.01043-13.
-
(2013)
Applied and Environmental Microbiology
, vol.79
, Issue.17
, pp. 5112-5120
-
-
Kozich, J.J.1
Westcott, S.L.2
Baxter, N.T.3
Highlander, S.K.4
Schloss, P.D.5
-
44
-
-
84945491851
-
Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton
-
Labonté JM, Swan BK, Poulos B, Luo H, Koren S, Hallam SJ, Sullivan MB, Woyke T, Eric Wommack K, Stepanauskas R. 2015. Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton. The ISME Journal 9(11):2386-2399 DOI 10.1038/ismej.2015.48.
-
(2015)
The ISME Journal
, vol.9
, Issue.11
, pp. 2386-2399
-
-
Labonté, J.M.1
Swan, B.K.2
Poulos, B.3
Luo, H.4
Koren, S.5
Hallam, S.J.6
Sullivan, M.B.7
Woyke, T.8
Eric Wommack, K.9
Stepanauskas, R.10
-
45
-
-
78650936059
-
Microbial nitrogen cycling processes in oxygen minimum zones
-
Lam P, Kuypers MMM. 2011. Microbial nitrogen cycling processes in oxygen minimum zones. Annual Review of Marine Science 3(1):317-345 DOI 10.1146/annurev-marine-120709-142814.
-
(2011)
Annual Review of Marine Science
, vol.3
, Issue.1
, pp. 317-345
-
-
Lam, P.1
Kuypers, M.M.M.2
-
46
-
-
84859210032
-
Fast gapped-read alignment with bowtie 2
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with bowtie 2. Nature Methods 9(4):357-359 DOI 10.1038/nmeth.1923.
-
(2012)
Nature Methods
, vol.9
, Issue.4
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
47
-
-
79960004119
-
Interactive tree of life v2: online annotation and display of phylogenetic trees made easy
-
Letunic I, Bork P. 2011. Interactive tree of life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Research 39(Suppl. 2):475-478 DOI 10.1093/nar/gkq818.
-
(2011)
Nucleic Acids Research
, vol.39
, pp. 475-478
-
-
Letunic, I.1
Bork, P.2
-
48
-
-
80054915847
-
A statistical framework for snp calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
-
Li H. 2011. A statistical framework for snp calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics 27(21):2987-2993 DOI 10.1093/bioinformatics/btr509.
-
(2011)
Bioinformatics
, vol.27
, Issue.21
, pp. 2987-2993
-
-
Li, H.1
-
49
-
-
40849126681
-
Reticulate representation of evolutionary and functional relationships between phage genomes
-
Lima-Mendez G, Van Helden J, Toussaint A, Leplae R. 2008. Reticulate representation of evolutionary and functional relationships between phage genomes. Molecular Biology and Evolution 25(4):762-777 DOI 10.1093/molbev/msn023.
-
(2008)
Molecular Biology and Evolution
, vol.25
, Issue.4
, pp. 762-777
-
-
Lima-Mendez, G.1
Van Helden, J.2
Toussaint, A.3
Leplae, R.4
-
50
-
-
27744480467
-
Photosynthesis genes in marine viruses yield proteins during host infection
-
Lindell D, Jaffe JD, Johnson ZI, Church GM, Chisholm SW. 2005. Photosynthesis genes in marine viruses yield proteins during host infection. Nature 438(7064):86-89 DOI 10.1038/nature04111.
-
(2005)
Nature
, vol.438
, Issue.7064
, pp. 86-89
-
-
Lindell, D.1
Jaffe, J.D.2
Johnson, Z.I.3
Church, G.M.4
Chisholm, S.W.5
-
51
-
-
3342915398
-
Transfer of photosynthesis genes to and from prochlorococcus viruses
-
Lindell D, Sullivan MB, Johnson ZI, Tolonen AC, Rohwer F, Chisholm SW. 2004. Transfer of photosynthesis genes to and from prochlorococcus viruses. Pro- ceedings of the National Academy of Sciences of the United States of America 101(30):11013-11018 DOI 10.1073/pnas.0401526101.
-
(2004)
Pro- ceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.30
, pp. 11013-11018
-
-
Lindell, D.1
Sullivan, M.B.2
Johnson, Z.I.3
Tolonen, A.C.4
Rohwer, F.5
Chisholm, S.W.6
-
52
-
-
80054913451
-
FLASH: fast length adjustment of short reads to improve genome assemblies
-
Magoc T, Salzberg SL. 2011. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27(21):2957-2963 DOI 10.1093/bioinformatics/btr507.
-
(2011)
Bioinformatics
, vol.27
, Issue.21
, pp. 2957-2963
-
-
Magoc, T.1
Salzberg, S.L.2
-
53
-
-
0029668832
-
Effects of viruses on nutrient turnover and growth efficiency of noninfected marine bacterioplankton
-
Middelboe M, Jørgensen NOG, Kroer N. 1996. Effects of viruses on nutrient turnover and growth efficiency of noninfected marine bacterioplankton. Applied and Environ- mental Microbiology 62(6):1991-1997.
-
(1996)
Applied and Environ- mental Microbiology
, vol.62
, Issue.6
, pp. 1991-1997
-
-
Middelboe, M.1
Jørgensen, N.O.G.2
Kroer, N.3
-
54
-
-
3342929288
-
Genetic organization of the ps- bAD region in phages infecting marine synechococcus strains
-
Millard A, Clokie MRJ, Shub DA, Mann NH. 2004. Genetic organization of the ps- bAD region in phages infecting marine synechococcus strains. Proceedings of the National Academy of Sciences of the United States of America 101(30):11007-11012 DOI 10.1073/pnas.0401478101.
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.30
, pp. 11007-11012
-
-
Millard, A.1
Clokie, M.R.J.2
Shub, D.A.3
Mann, N.H.4
-
55
-
-
85019307757
-
Environmental viral genomes shed new light on virus-host interactions in the ocean
-
Nishimura Y, Watai H, Honda T, Mihara T, Omae K, Roux S, Blanc-Mathieu R, Yamamoto K, Hingamp P, Sako Y, Sullivan MB, Goto S, Ogata H, Yoshida TV. 2017. Environmental viral genomes shed new light on virus-host interactions in the ocean. mSphere 2(2):1-19 DOI 10.1128/mSphere.00359-16.
-
(2017)
mSphere
, vol.2
, Issue.2
, pp. 1-19
-
-
Nishimura, Y.1
Watai, H.2
Honda, T.3
Mihara, T.4
Omae, K.5
Roux, S.6
Blanc-Mathieu, R.7
Yamamoto, K.8
Hingamp, P.9
Sako, Y.10
Sullivan, M.B.11
Goto, S.12
Ogata, H.13
Yoshida, T.V.14
-
57
-
-
84959221063
-
NC10 bacteria in marine oxygen minimum zones
-
Padilla CC, Bristow LA, Sarode N, Garcia-Robledo E, Gómez Ramírez E, Benson CR, Bourbonnais A, Altabet MA, Girguis PR, Thamdrup B, Stewart FJ. 2016. NC10 bacteria in marine oxygen minimum zones. The ISME Journal 10(8):1-5 DOI 10.1038/ismej.2015.92.
-
(2016)
The ISME Journal
, vol.10
, Issue.8
, pp. 1-5
-
-
Padilla, C.C.1
Bristow, L.A.2
Sarode, N.3
Garcia-Robledo, E.4
Gómez Ramírez, E.5
Benson, C.R.6
Bourbonnais, A.7
Altabet, M.A.8
Girguis, P.R.9
Thamdrup, B.10
Stewart, F.J.11
-
58
-
-
84936996071
-
Standard filtration practices may significantly distort planktonic microbial diversity estimates
-
Padilla CC, Ganesh S, Gantt S, Huhman A, Parris DJ, Sarode N, Stewart FJ. 2015. Standard filtration practices may significantly distort planktonic microbial diversity estimates. Frontiers in Microbiology 6:1-10.
-
(2015)
Frontiers in Microbiology
, vol.6
, pp. 1-10
-
-
Padilla, C.C.1
Ganesh, S.2
Gantt, S.3
Huhman, A.4
Parris, D.J.5
Sarode, N.6
Stewart, F.J.7
-
59
-
-
84925358666
-
Targeted diversity generation by intraterrestrial archaea and archaeal viruses
-
Paul BG, Bagby SC, Czornyj E, Arambula D, Handa S, Sczyrba A, Ghosh P, Miller JF, Valentine DL. 2015. Targeted diversity generation by intraterrestrial archaea and archaeal viruses. Nature Communications 6(6585):1-8 DOI 10.1038/ncomms7585.
-
(2015)
Nature Communications
, vol.6
, Issue.6585
, pp. 1-8
-
-
Paul, B.G.1
Bagby, S.C.2
Czornyj, E.3
Arambula, D.4
Handa, S.5
Sczyrba, A.6
Ghosh, P.7
Miller, J.F.8
Valentine, D.L.9
-
60
-
-
0036151819
-
Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detec- tion of pelagic marine bacteria and archaea comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacter
-
Pernthaler A, Preston CM, Pernthaler J, Delong EF, Amann R. 2002. Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detec- tion of pelagic marine bacteria and archaea comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacter. Applied and Environmental Microbiology 68(2):661-667 DOI 10.1128/AEM.68.2.661-667.2002.
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.2
, pp. 661-667
-
-
Pernthaler, A.1
Preston, C.M.2
Pernthaler, J.3
Delong, E.F.4
Amann, R.5
-
61
-
-
85018179010
-
Novel abun- dant oceanic viruses of uncultured marine group II Euryarchaeota
-
Philosof A, Yutin N, Flores-Uribe J, Sharon I, Koonin EV, Béjà O. 2017. Novel abun- dant oceanic viruses of uncultured marine group II Euryarchaeota. Currrent Biology 27(9):1362-1368 DOI 10.1016/j.cub.2017.03.052.
-
(2017)
Currrent Biology
, vol.27
, Issue.9
, pp. 1362-1368
-
-
Philosof, A.1
Yutin, N.2
Flores-Uribe, J.3
Sharon, I.4
Koonin, E.V.5
Béjà, O.6
-
62
-
-
84861978077
-
Microbial community structure and productivity in the oxygen minimum zone of the eastern tropical North Pacific
-
Podlaska A, Wakeham S, Fanning K, Taylor G. 2012. Microbial community structure and productivity in the oxygen minimum zone of the eastern tropical North Pacific. Deep-Sea Research I66:77-89.
-
(2012)
Deep-Sea Research
, vol.66
, pp. 77-89
-
-
Podlaska, A.1
Wakeham, S.2
Fanning, K.3
Taylor, G.4
-
63
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP. 2010. FastTree 2-approximately maximum-likelihood trees for large alignments. PLOS ONE 5(3):e9490 DOI 10.1371/journal.pone.0009490.
-
(2010)
PLOS ONE
, vol.5
, Issue.3
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
64
-
-
85000501937
-
Viruses inhibit CO2 fixation in the most abundant phototrophs on earth
-
Puxty RJ, Millard AD, Evans DJ, Scanlan DJ. 2016. Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology 26(12):1585-1589 DOI 10.1016/j.cub.2016.04.036.
-
(2016)
Current Biology
, vol.26
, Issue.12
, pp. 1585-1589
-
-
Puxty, R.J.1
Millard, A.D.2
Evans, D.J.3
Scanlan, D.J.4
-
65
-
-
84904278219
-
BAMMtools: an R package for the analysis of evolutionary dy- namics on phylogenetic trees
-
Rabosky DL, Grundler M, Anderson C, Title P, Shi JJ, Brown JW, Huang H, Lar-son JG. 2014. BAMMtools: an R package for the analysis of evolutionary dy- namics on phylogenetic trees. Methods in Ecology and Evolution 5:701-707 DOI 10.1111/2041-210X.12199.
-
(2014)
Methods in Ecology and Evolution
, vol.5
, pp. 701-707
-
-
Rabosky, D.L.1
Grundler, M.2
Anderson, C.3
Title, P.4
Shi, J.J.5
Brown, J.W.6
Huang, H.7
Lar-son, J.G.8
-
66
-
-
84989812720
-
Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses
-
Roux S, Brum JR, Dutilh BE, Sunagawa S, Duhaime MB, Loy A, Poulos BT, Solonenko N, Lara E, Poulain J, Pesant S, Kandels-Lewis S, Dimier C, Picheral M, Searson S, Cruaud C, Alberti A, Duarte CMM, Gasol JMM. 2016. Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses. Nature 537(7622):689-693 DOI 10.1038/nature19366.
-
(2016)
Nature
, vol.537
, Issue.7622
, pp. 689-693
-
-
Roux, S.1
Brum, J.R.2
Dutilh, B.E.3
Sunagawa, S.4
Duhaime, M.B.5
Loy, A.6
Poulos, B.T.7
Solonenko, N.8
Lara, E.9
Poulain, J.10
Pesant, S.11
Kandels-Lewis, S.12
Dimier, C.13
Picheral, M.14
Searson, S.15
Cruaud, C.16
Alberti, A.17
Duarte, C.M.M.18
Gasol, J.M.M.19
-
67
-
-
84930658013
-
VirSorter: mining viral signal from microbial genomic data
-
Roux S, Enault F, Hurwitz BL, Sullivan MB. 2015. VirSorter: mining viral signal from microbial genomic data. PeerJ 3:e985 DOI 10.7717/peerj.985.
-
(2015)
PeerJ
, vol.3
-
-
Roux, S.1
Enault, F.2
Hurwitz, B.L.3
Sullivan, M.B.4
-
68
-
-
84939526110
-
Viral dark matter and virus-host interactions resolved from publicly available microbial genomes
-
Roux S, Hallam SJ, Woyke T, Sullivan MB. 2015. Viral dark matter and virus-host interactions resolved from publicly available microbial genomes. ELIFE 4:1-20.
-
(2015)
ELIFE
, vol.4
, pp. 1-20
-
-
Roux, S.1
Hallam, S.J.2
Woyke, T.3
Sullivan, M.B.4
-
69
-
-
84899552918
-
Metavir 2: new tools for viral metagenome comparison and assembled virome analysis
-
Roux S, Tournayre J, Mahul A, Debroas D, Enault F. 2014. Metavir 2: new tools for viral metagenome comparison and assembled virome analysis. BMC Bioinformatics 15(76):1-12 DOI 10.1186/1471-2105-15-76.
-
(2014)
BMC Bioinformatics
, vol.15
, Issue.76
, pp. 1-12
-
-
Roux, S.1
Tournayre, J.2
Mahul, A.3
Debroas, D.4
Enault, F.5
-
71
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. 2003. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Research 13(11):2498-2504 DOI 10.1101/gr.1239303.
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
72
-
-
77953728602
-
Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins
-
Soler N, Marguet E, Cortez D, Desnoues N, Keller J, Van Tilbeurgh H, Sezonov G, Forterre P. 2010. Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins. Nucleic Acids Research 38(15):5088-5104 DOI 10.1093/nar/gkq236.
-
(2010)
Nucleic Acids Research
, vol.38
, Issue.15
, pp. 5088-5104
-
-
Soler, N.1
Marguet, E.2
Cortez, D.3
Desnoues, N.4
Keller, J.5
Van Tilbeurgh, H.6
Sezonov, G.7
Forterre, P.8
-
73
-
-
78650045540
-
The phage-host arms-race: shaping the evolution of microbes
-
Stern A, Sorek R. 2011. The phage-host arms-race: shaping the evolution of microbes. Bioessays 33(1):43-51 DOI 10.1002/bies.201000071.
-
(2011)
Bioessays
, vol.33
, Issue.1
, pp. 43-51
-
-
Stern, A.1
Sorek, R.2
-
74
-
-
41849142283
-
Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific
-
Stevens H, Ulloa O. 2008. Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific. Environmental Microbiology 10(5):1244-1259 DOI 10.1111/j.1462-2920.2007.01539.x.
-
(2008)
Environmental Microbiology
, vol.10
, Issue.5
, pp. 1244-1259
-
-
Stevens, H.1
Ulloa, O.2
-
75
-
-
84855287323
-
Microbial metatranscriptomics in a perma- nent marine oxygen minimum zone
-
Stewart FJ, Ulloa O, Delong EF. 2012. Microbial metatranscriptomics in a perma- nent marine oxygen minimum zone. Environmental Microbiology 14(1):23-40 DOI 10.1111/j.1462-2920.2010.02400.x.
-
(2012)
Environmental Microbiology
, vol.14
, Issue.1
, pp. 23-40
-
-
Stewart, F.J.1
Ulloa, O.2
Delong, E.F.3
-
76
-
-
34548487267
-
Selection and characterization of cyanophage resistance in marine synechococcus strains
-
Stoddard LI, Martiny JBH, Marston MF. 2007. Selection and characterization of cyanophage resistance in marine synechococcus strains. Applied and Environmental Microbiology 73(17):5516-5522 DOI 10.1128/AEM.00356-07.
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.17
, pp. 5516-5522
-
-
Stoddard, L.I.1
Martiny, J.B.H.2
Marston, M.F.3
-
77
-
-
33747369803
-
Prevalence and evolution of core photosystem ii genes in marine cyanobacterial viruses and their hosts
-
Sullivan MB, Lindell D, Lee JA, Thompson LR, Bielawski JP, Chisholm SW. 2006. Prevalence and evolution of core photosystem ii genes in marine cyanobacterial viruses and their hosts. PLOS Biology 4(8):1344-1357 DOI 10.1371/journal.pbio.0040234.
-
(2006)
PLOS Biology
, vol.4
, Issue.8
, pp. 1344-1357
-
-
Sullivan, M.B.1
Lindell, D.2
Lee, J.A.3
Thompson, L.R.4
Bielawski, J.P.5
Chisholm, S.W.6
-
78
-
-
34548792911
-
Marine viruses-major players in the global ecosystem
-
Suttle C. 2007. Marine viruses-major players in the global ecosystem. Nature Reviews Microbiology 5:801-812 DOI 10.1038/nrmicro1750.
-
(2007)
Nature Reviews Microbiology
, vol.5
, pp. 801-812
-
-
Suttle, C.1
-
79
-
-
85020780030
-
-
Package pvclust v2.0-0
-
Suzuki R, Shimodaira H. 2015. ``Package pvclust v2.0-0''. 1-14.
-
(2015)
, pp. 1-14
-
-
Suzuki, R.1
Shimodaira, H.2
-
80
-
-
3242797565
-
Combining catalyzed reported deposition-fluorescence in situ hybridization and automicrography to de- tect substrate utilization by bacteria and archaea in the deep ocean
-
Teira E, Reinthaler T, Pernthaler A, Pernthaler J, Herndl GJ. 2004. Combining catalyzed reported deposition-fluorescence in situ hybridization and automicrography to de- tect substrate utilization by bacteria and archaea in the deep ocean. Applied and Envi- ronmental Microbiology 70(7):4411-4414 DOI 10.1128/AEM.70.7.4411-4414.2004.
-
(2004)
Applied and Envi- ronmental Microbiology
, vol.70
, Issue.7
, pp. 4411-4414
-
-
Teira, E.1
Reinthaler, T.2
Pernthaler, A.3
Pernthaler, J.4
Herndl, G.J.5
-
81
-
-
80053624997
-
Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism
-
Thompson LR, Zeng Q, Kelly L, Huang KH, Singer AU, Stubbe J, Chisholm SW. 2011. Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism. Proceedings of the National Academy of Sciences of the United States of America 108(39):E757-E764 DOI 10.1073/pnas.1102164108.
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, Issue.39
, pp. E757-E764
-
-
Thompson, L.R.1
Zeng, Q.2
Kelly, L.3
Huang, K.H.4
Singer, A.U.5
Stubbe, J.6
Chisholm, S.W.7
-
82
-
-
84934937416
-
A new highly sensitive method to assess respiration rates and kinetics of natural planktonic communities by use of the switchable trace oxygen sensor and reduced oxygen concentrations
-
Tiano L, Garcia-Robledo E, Revsbech NP. 2014. A new highly sensitive method to assess respiration rates and kinetics of natural planktonic communities by use of the switchable trace oxygen sensor and reduced oxygen concentrations. PLOS ONE 9(8):1-13 DOI 10.1371/journal.pone.0105399.
-
(2014)
PLOS ONE
, vol.9
, Issue.8
, pp. 1-13
-
-
Tiano, L.1
Garcia-Robledo, E.2
Revsbech, N.P.3
-
83
-
-
84867090645
-
Microbial oceanography of anoxic oxygen minimum zones
-
Ulloa O, Canfield DE, DeLong EF, Letelier RM, Stewart FJ. 2012. Microbial oceanography of anoxic oxygen minimum zones. Proceedings of the National Academy of Sciences of the United States of America 109(40):15996-16003 DOI 10.1073/pnas.1205009109.
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, vol.109
, Issue.40
, pp. 15996-16003
-
-
Ulloa, O.1
Canfield, D.E.2
DeLong, E.F.3
Letelier, R.M.4
Stewart, F.J.5
-
84
-
-
68949202404
-
Local adaptation of bacterio- phages to their bacterial hosts in soil
-
Vos M, Birkett PJ, Birch E, Griffiths RI, Buckling A. 2009. Local adaptation of bacterio- phages to their bacterial hosts in soil. Science 325(5942):833 DOI 10.1126/science.1174173.
-
(2009)
Science
, vol.325
, Issue.5942
, pp. 833
-
-
Vos, M.1
Birkett, P.J.2
Birch, E.3
Griffiths, R.I.4
Buckling, A.5
-
85
-
-
65449188232
-
Jalview version 2-a multiple sequence alignment editor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ. 2009. Jalview version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25(9):1189-1191 DOI 10.1093/bioinformatics/btp033.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
86
-
-
30344464074
-
Can incomplete taxa rescue phylogenetic analyses from long-branch attraction?
-
Wiens JJ. 2005. Can incomplete taxa rescue phylogenetic analyses from long-branch attraction? Systematic Biology 54(5):731-742 DOI 10.1080/10635150500234583.
-
(2005)
Systematic Biology
, vol.54
, Issue.5
, pp. 731-742
-
-
Wiens, J.J.1
-
87
-
-
0032858844
-
Viruses and nutrient cycles the aquatic food webs
-
Wilhelm SW, Suttle CA. 1999. Viruses and nutrient cycles the aquatic food webs. BioScience 49(10):781-788 DOI 10.2307/1313569.
-
(1999)
BioScience
, vol.49
, Issue.10
, pp. 781-788
-
-
Wilhelm, S.W.1
Suttle, C.A.2
-
88
-
-
84861188582
-
Microbial ecology of expanding oxygen mini- mum zones
-
Wright JJ, Konwar KM, Hallam SJ. 2012. Microbial ecology of expanding oxygen mini- mum zones. Nature Reviews Microbiology 10(6):381-394 DOI 10.1038/nrmicro2778.
-
(2012)
Nature Reviews Microbiology
, vol.10
, Issue.6
, pp. 381-394
-
-
Wright, J.J.1
Konwar, K.M.2
Hallam, S.J.3
-
89
-
-
84946820466
-
Marine group II archaea, potentially important players in the global ocean carbon cycle
-
Zhang CL, Xie W, Martin-Cuadrado AB, Rodriguez-Valera F. 2015. Marine group II archaea, potentially important players in the global ocean carbon cycle. Frontiers in Microbiology 6(1108):1-9 DOI 10.3389/fmicb.2015.01108.
-
(2015)
Frontiers in Microbiology
, vol.6
, Issue.1108
, pp. 1-9
-
-
Zhang, C.L.1
Xie, W.2
Martin-Cuadrado, A.B.3
Rodriguez-Valera, F.4
-
90
-
-
67650763466
-
Genome analysis and genome-wide proteomics of thermococcus gammatolerans, the most radioresistant organism known amongst the archaea
-
Zivanovic Y, Armengaud J, Lagorce A, Leplat C, Guérin P, Dutertre M, Anthouard V, Forterre P, Wincker P, Confalonieri F. 2009. Genome analysis and genome-wide proteomics of thermococcus gammatolerans, the most radioresistant organism known amongst the archaea. Genome Biology 10(6):R70 DOI 10.1186/gb-2009-10-6-r70.
-
(2009)
Genome Biology
, vol.10
, Issue.6
, pp. R70
-
-
Zivanovic, Y.1
Armengaud, J.2
Lagorce, A.3
Leplat, C.4
Guérin, P.5
Dutertre, M.6
Anthouard, V.7
Forterre, P.8
Wincker, P.9
Confalonieri, F.10
|