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Volumn 26, Issue 3, 2017, Pages 1053-1077

Predictive accuracy of novel risk factors and markers: A simulation study of the sensitivity of different performance measures for the Cox proportional hazards regression model

Author keywords

Cox proportional hazards model; discrimination; model performance; Monte Carlo simulations; predictive accuracy; predictive models; risk factors; Survival analysis

Indexed keywords

BIOLOGICAL MARKER;

EID: 85020744103     PISSN: 09622802     EISSN: 14770334     Source Type: Journal    
DOI: 10.1177/0962280214567141     Document Type: Article
Times cited : (33)

References (45)
  • 1
    • 72749123968 scopus 로고    scopus 로고
    • A substantial and confusing variation exists in handling of baseline covariates in randomized controlled trials: A review of trials published in leading medical journals
    • Austin PC, Manca A, Zwarenstein M, et al. A substantial and confusing variation exists in handling of baseline covariates in randomized controlled trials: a review of trials published in leading medical journals. J Clin Epidemiol 2010; 63: 142-153.
    • (2010) J Clin Epidemiol , vol.63 , pp. 142-153
    • Austin, P.C.1    Manca, A.2    Zwarenstein, M.3
  • 2
    • 78650791881 scopus 로고    scopus 로고
    • Several methods to assess improvement in risk prediction models: Extension to survival analysis
    • Chambless LE, Cummiskey CP, Cui G,. Several methods to assess improvement in risk prediction models: extension to survival analysis. Stat Med 2011; 30: 22-38.
    • (2011) Stat Med , vol.30 , pp. 22-38
    • Chambless, L.E.1    Cummiskey, C.P.2    Cui, G.3
  • 3
    • 84872804715 scopus 로고    scopus 로고
    • Predictive accuracy of risk factors and markers: A simulation study of the effect of novel markers on different performance measures for logistic regression models
    • Austin PC, Steyerberg EW,. Predictive accuracy of risk factors and markers: a simulation study of the effect of novel markers on different performance measures for logistic regression models. Stat Med 2013; 32: 661-672.
    • (2013) Stat Med , vol.32 , pp. 661-672
    • Austin, P.C.1    Steyerberg, E.W.2
  • 4
    • 84866455418 scopus 로고    scopus 로고
    • A simulation study of predictive ability measures in a survival model II: Explained randomness and predictive accuracy
    • Choodari-Oskooei B, Royston P, Parmar MK,. A simulation study of predictive ability measures in a survival model II: explained randomness and predictive accuracy. Stat Med 2012; 31: 2644-2659.
    • (2012) Stat Med , vol.31 , pp. 2644-2659
    • Choodari-Oskooei, B.1    Royston, P.2    Parmar, M.K.3
  • 5
    • 84866464782 scopus 로고    scopus 로고
    • A simulation study of predictive ability measures in a survival model I: Explained variation measures
    • Choodari-Oskooei B, Royston P, Parmar MK,. A simulation study of predictive ability measures in a survival model I: explained variation measures. Stat Med 2012; 31: 2627-2643.
    • (2012) Stat Med , vol.31 , pp. 2627-2643
    • Choodari-Oskooei, B.1    Royston, P.2    Parmar, M.K.3
  • 6
    • 77949347679 scopus 로고    scopus 로고
    • On the prognostic value of survival models with application to gene expression signatures
    • Hielscher T, Zucknick M, Werft W, et al. On the prognostic value of survival models with application to gene expression signatures. Stat Med 2010; 29: 818-829.
    • (2010) Stat Med , vol.29 , pp. 818-829
    • Hielscher, T.1    Zucknick, M.2    Werft, W.3
  • 7
    • 0029785607 scopus 로고    scopus 로고
    • Explained variation in survival analysis
    • Schemper M, Stare J,. Explained variation in survival analysis. Stat Med 1996; 15: 1999-2012.
    • (1996) Stat Med , vol.15 , pp. 1999-2012
    • Schemper, M.1    Stare, J.2
  • 8
    • 84862674890 scopus 로고    scopus 로고
    • Quantifying discrimination of Framingham risk functions with different survival C statistics
    • Pencina MJ, D'Agostino RB Sr, Song L,. Quantifying discrimination of Framingham risk functions with different survival C statistics. Stat Med 2012; 31 (15): 1543-1553.
    • (2012) Stat Med , vol.31 , Issue.15 , pp. 1543-1553
    • Pencina, M.J.1    D'Agostino, R.B.2    Song, L.3
  • 9
    • 79954466848 scopus 로고    scopus 로고
    • On the C-statistics for evaluating overall adequacy of risk prediction procedures with censored survival data
    • Uno H, Cai T, Pencina MJ, et al. On the C-statistics for evaluating overall adequacy of risk prediction procedures with censored survival data. Stat Med 2011; 30: 1105-1117.
    • (2011) Stat Med , vol.30 , pp. 1105-1117
    • Uno, H.1    Cai, T.2    Pencina, M.J.3
  • 12
    • 3242770671 scopus 로고    scopus 로고
    • Overall C as a measure of discrimination in survival analysis: Model specific population value and confidence interval estimation
    • Pencina MJ, D'Agostino RB,. Overall C as a measure of discrimination in survival analysis: model specific population value and confidence interval estimation. Stat Med 2004; 23: 2109-2123.
    • (2004) Stat Med , vol.23 , pp. 2109-2123
    • Pencina, M.J.1    D'Agostino, R.B.2
  • 13
    • 33750070627 scopus 로고    scopus 로고
    • Estimation of time-dependent area under the ROC curve for long-term risk prediction
    • Chambless LE, Diao G,. Estimation of time-dependent area under the ROC curve for long-term risk prediction. Stat Med 2006; 25: 3474-3486.
    • (2006) Stat Med , vol.25 , pp. 3474-3486
    • Chambless, L.E.1    Diao, G.2
  • 14
    • 0030069896 scopus 로고    scopus 로고
    • Multivariable prognostic models: Issues in developing models, evaluating assumptions and adequacy, and measuring and reducing errors
    • Harrell FE Jr, Lee KL, Mark DB,. Multivariable prognostic models: issues in developing models, evaluating assumptions and adequacy, and measuring and reducing errors. Stat Med 1996; 15: 361-387.
    • (1996) Stat Med , vol.15 , pp. 361-387
    • Harrell, F.E.1    Lee, K.L.2    Mark, D.B.3
  • 15
    • 27944450863 scopus 로고    scopus 로고
    • Concordance probability and discriminatory power in proportional hazards regression
    • Gonen M, Heller G,. Concordance probability and discriminatory power in proportional hazards regression. Biometrika 2005; 92: 965-970.
    • (2005) Biometrika , vol.92 , pp. 965-970
    • Gonen, M.1    Heller, G.2
  • 16
    • 1442351098 scopus 로고    scopus 로고
    • A new measure of prognostic separation in survival data
    • Royston P, Sauerbrei W,. A new measure of prognostic separation in survival data. Stat Med 2004; 23: 723-748.
    • (2004) Stat Med , vol.23 , pp. 723-748
    • Royston, P.1    Sauerbrei, W.2
  • 17
    • 0001669738 scopus 로고
    • Measures of dependence for censored survival data
    • Kent J, O'Quigley J,. Measures of dependence for censored survival data. Biometrika 1988; 75: 525-534.
    • (1988) Biometrika , vol.75 , pp. 525-534
    • Kent, J.1    O'Quigley, J.2
  • 18
    • 0025286476 scopus 로고
    • Measures of explained variation for survival data
    • Korn EL, Simon R,. Measures of explained variation for survival data. Stat Med 1990; 9: 487-503.
    • (1990) Stat Med , vol.9 , pp. 487-503
    • Korn, E.L.1    Simon, R.2
  • 19
    • 0028267746 scopus 로고
    • Predictive capability of proportional hazards regression
    • O'Quigley J, Flandre P,. Predictive capability of proportional hazards regression. Proc Natl Acad Sci USA 1994; 91: 2310-2314.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 2310-2314
    • O'Quigley, J.1    Flandre, P.2
  • 20
    • 0031459517 scopus 로고    scopus 로고
    • Measures of explained variation for a regression model used in survival analysis
    • Akazawa K,. Measures of explained variation for a regression model used in survival analysis. J Med Syst 1997; 21: 229-238.
    • (1997) J Med Syst , vol.21 , pp. 229-238
    • Akazawa, K.1
  • 22
    • 33646515606 scopus 로고    scopus 로고
    • Explained variation for survival models
    • Royston P,. Explained variation for survival models. Stata J 2006; 6: 1-14.
    • (2006) Stata J , vol.6 , pp. 1-14
    • Royston, P.1
  • 23
    • 77956887506 scopus 로고
    • A note on a general definition of the coefficient of determination
    • Nagelkerke NJD,. A note on a general definition of the coefficient of determination. Biometrika 1991; 78: 691-692.
    • (1991) Biometrika , vol.78 , pp. 691-692
    • Nagelkerke, N.J.D.1
  • 24
    • 0003011114 scopus 로고    scopus 로고
    • A measure of dependence for proportional hazards models
    • Xu R, O'Quigley J,. A measure of dependence for proportional hazards models. J Nonparametr Stat 1999; 12: 83-107.
    • (1999) J Nonparametr Stat , vol.12 , pp. 83-107
    • Xu, R.1    O'Quigley, J.2
  • 25
    • 13644250447 scopus 로고    scopus 로고
    • Explained randomness in proportional hazards models
    • O'Quigley J, Xu R, Stare J,. Explained randomness in proportional hazards models. Stat Med 2005; 24: 479-489.
    • (2005) Stat Med , vol.24 , pp. 479-489
    • O'Quigley, J.1    Xu, R.2    Stare, J.3
  • 26
    • 3242782539 scopus 로고
    • The explained variation in proportional hazards regression
    • Schemper M,. The explained variation in proportional hazards regression. Biometrika 1990; 77: 216-218.
    • (1990) Biometrika , vol.77 , pp. 216-218
    • Schemper, M.1
  • 27
    • 0033619170 scopus 로고    scopus 로고
    • Assessment and comparison of prognostic classification schemes for survival data
    • Graf E, Schmoor C, Sauerbrei W, et al. Assessment and comparison of prognostic classification schemes for survival data. Stat Med 1999; 18: 2529-2545.
    • (1999) Stat Med , vol.18 , pp. 2529-2545
    • Graf, E.1    Schmoor, C.2    Sauerbrei, W.3
  • 28
    • 0034024003 scopus 로고    scopus 로고
    • Predictive accuracy and explained variation in Cox regression
    • Schemper M, Henderson R,. Predictive accuracy and explained variation in Cox regression. Biometrics 2000; 56: 249-255.
    • (2000) Biometrics , vol.56 , pp. 249-255
    • Schemper, M.1    Henderson, R.2
  • 29
    • 0031555699 scopus 로고    scopus 로고
    • A new approach to estimate correlation coefficient in the presence of censoring and proportional hazards
    • Schemper M, Kaider A,. A new approach to estimate correlation coefficient in the presence of censoring and proportional hazards. Comput Stat Data Anal 1997; 23: 467-476.
    • (1997) Comput Stat Data Anal , vol.23 , pp. 467-476
    • Schemper, M.1    Kaider, A.2
  • 32
    • 0001306626 scopus 로고
    • The demand for automobiles
    • Cragg JG, Uhler R,. The demand for automobiles. Can J Econ 1970; 3: 386-406.
    • (1970) Can J Econ , vol.3 , pp. 386-406
    • Cragg, J.G.1    Uhler, R.2
  • 33
    • 38849091997 scopus 로고    scopus 로고
    • Evaluating the added predictive ability of a new marker: From area under the ROC curve to reclassification and beyond
    • Pencina MJ, D'Agostino RB Sr, D'Agostino RB Jr, et al. Evaluating the added predictive ability of a new marker: from area under the ROC curve to reclassification and beyond. Stat Med 2008; 27: 157-172.
    • (2008) Stat Med , vol.27 , pp. 157-172
    • Pencina, M.J.1    D'Agostino, R.B.2    D'Agostino, R.B.3
  • 34
    • 34347335552 scopus 로고    scopus 로고
    • Estimation of predictive accuracy in survival analysis using R and S-PLUS
    • Lusa L, Miceli R, Mariani L,. Estimation of predictive accuracy in survival analysis using R and S-PLUS. Comput Methods Programs Biomed 2007; 87: 132-137.
    • (2007) Comput Methods Programs Biomed , vol.87 , pp. 132-137
    • Lusa, L.1    Miceli, R.2    Mariani, L.3
  • 35
    • 19944372078 scopus 로고    scopus 로고
    • Generating survival times to simulate Cox proportional hazards models
    • Bender R, Augustin T, Blettner M,. Generating survival times to simulate Cox proportional hazards models. Stat Med 2005; 24: 1713-1723.
    • (2005) Stat Med , vol.24 , pp. 1713-1723
    • Bender, R.1    Augustin, T.2    Blettner, M.3
  • 36
    • 72249094112 scopus 로고    scopus 로고
    • Effectiveness of public report cards for improving the quality of cardiac care: The EFFECT study: A randomized trial
    • Tu JV, Donovan LR, Lee DS, et al. Effectiveness of public report cards for improving the quality of cardiac care: the EFFECT study: a randomized trial. J Am Med Assoc 2009; 302: 2330-2337.
    • (2009) J Am Med Assoc , vol.302 , pp. 2330-2337
    • Tu, J.V.1    Donovan, L.R.2    Lee, D.S.3
  • 38
    • 0344420330 scopus 로고    scopus 로고
    • Predicting mortality among patients hospitalized for heart failure: Derivation and validation of a clinical model
    • Lee DS, Austin PC, Rouleau JL, et al. Predicting mortality among patients hospitalized for heart failure: derivation and validation of a clinical model. J Am Med Assoc 2003; 290: 2581-2587.
    • (2003) J Am Med Assoc , vol.290 , pp. 2581-2587
    • Lee, D.S.1    Austin, P.C.2    Rouleau, J.L.3
  • 39
    • 34548028293 scopus 로고    scopus 로고
    • The impact of genotype frequencies on the clinical validity of genomic profiling for predicting common chronic diseases
    • Janssens AC, Moonesinghe R, Yang Q, et al. The impact of genotype frequencies on the clinical validity of genomic profiling for predicting common chronic diseases. Genet Med 2007; 9: 528-535.
    • (2007) Genet Med , vol.9 , pp. 528-535
    • Janssens, A.C.1    Moonesinghe, R.2    Yang, Q.3
  • 40
    • 72249113124 scopus 로고    scopus 로고
    • Assessment of claims of improved prediction beyond the Framingham risk score
    • Tzoulaki I, Liberopoulos G, Ioannidis JP,. Assessment of claims of improved prediction beyond the Framingham risk score. J Am Med Assoc 2009; 302: 2345-2352.
    • (2009) J Am Med Assoc , vol.302 , pp. 2345-2352
    • Tzoulaki, I.1    Liberopoulos, G.2    Ioannidis, J.P.3
  • 41
    • 85018749650 scopus 로고    scopus 로고
    • Events per variable (EPV) and the relative performance of different strategies for estimating the out-of-sample validity of logistic regression models
    • Austin PC, Steyerberg EW,. Events per variable (EPV) and the relative performance of different strategies for estimating the out-of-sample validity of logistic regression models. Stat Methods Med Res 2017; 26: 796-808.
    • (2017) Stat Methods Med Res , vol.26 , pp. 796-808
    • Austin, P.C.1    Steyerberg, E.W.2
  • 42
    • 0034906866 scopus 로고    scopus 로고
    • Internal validation of predictive models: Efficiency of some procedures for logistic regression analysis
    • Steyerberg EW, Harrell FE Jr, Borsboom GJ, et al. Internal validation of predictive models: efficiency of some procedures for logistic regression analysis. J Clin Epidemiol 2001; 54: 774-781.
    • (2001) J Clin Epidemiol , vol.54 , pp. 774-781
    • Steyerberg, E.W.1    Harrell, F.E.2    Borsboom, G.J.3
  • 43
    • 38949161848 scopus 로고    scopus 로고
    • AUC: A misleading measure of the performance of predictive distribution models
    • Lobo JM, Jiménez-Valverde A, Real R,. AUC: a misleading measure of the performance of predictive distribution models. Global Ecol Biogeogr 2007; 17: 145-151.
    • (2007) Global Ecol Biogeogr , vol.17 , pp. 145-151
    • Lobo, J.M.1    Jiménez-Valverde, A.2    Real, R.3
  • 44
    • 69549133517 scopus 로고    scopus 로고
    • Measuring classifier performance: A coherent alternative to the area under the ROC curve
    • Hand DJ,. Measuring classifier performance: a coherent alternative to the area under the ROC curve. Mach Learn 2009; 77: 103-123.
    • (2009) Mach Learn , vol.77 , pp. 103-123
    • Hand, D.J.1
  • 45
    • 84862319389 scopus 로고    scopus 로고
    • Interpreting the concordance statistic of a logistic regression model: Relation to the variance and odds ratio of a continuous explanatory variable
    • Austin PC, Steyerberg EW,. Interpreting the concordance statistic of a logistic regression model: relation to the variance and odds ratio of a continuous explanatory variable. BMC Med Res Methodol 2012; 12: 82-82. DOI: 10.1186/1471-2288-12-82.
    • (2012) BMC Med Res Methodol , vol.12 , pp. 82
    • Austin, P.C.1    Steyerberg, E.W.2


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