메뉴 건너뛰기




Volumn 12, Issue 6, 2017, Pages

Development and evaluation of a core genome multilocus typing scheme for whole-genome sequence-based typing of Acinetobacter baumannii

Author keywords

[No Author keywords available]

Indexed keywords

ACINETOBACTER; ACINETOBACTER BAUMANNII; ACINETOBACTER CALCOACETICUS; ACINETOBACTER NOSOCOMIALIS; ACINETOBACTER PITTII; ALLELE; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; CORE GENOME MULTILOCUS SEQUENCE TYPING; MULTILOCUS SEQUENCE TYPING; NONHUMAN; WHOLE GENOME SEQUENCING; CALIBRATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; PHYLOGENY; PROCEDURES;

EID: 85020431381     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0179228     Document Type: Article
Times cited : (106)

References (45)
  • 1
    • 47949089607 scopus 로고    scopus 로고
    • Acinetobacter baumannii: Emergence of a successful pathogen
    • PMID: 18625687
    • Peleg AY, Seifert H, Paterson DL (2008) Acinetobacter baumannii: Emergence of a successful pathogen. Clin Microbiol Rev 21: 538-582. https://doi.org/10.1128/CMR.00058-07 PMID: 18625687
    • (2008) Clin Microbiol Rev , vol.21 , pp. 538-582
    • Peleg, A.Y.1    Seifert, H.2    Paterson, D.L.3
  • 2
    • 36248932659 scopus 로고    scopus 로고
    • An increasing threat in hospitals: Multidrug-resistant Acinetobacter baumannii
    • Dijkshoorn L, Nemec A, Seifert H (2007) An increasing threat in hospitals: multidrug-resistant Acinetobacter baumannii. Nature Rev Microbiol 5: 939-951.
    • (2007) Nature Rev Microbiol , vol.5 , pp. 939-951
    • Dijkshoorn, L.1    Nemec, A.2    Seifert, H.3
  • 4
    • 0032923994 scopus 로고    scopus 로고
    • Risk factors for an outbreak of multi-drug-resistant Acinetobacter nosocomial pneumonia among intubated patients
    • PMID: 10334156
    • Husni RN, Goldstein LS, Arroliga AC, Hall GS, Fatica C, Stoller JK, et al. (1999) Risk factors for an outbreak of multi-drug-resistant Acinetobacter nosocomial pneumonia among intubated patients. Chest 115: 1378-1382. PMID: 10334156
    • (1999) Chest , vol.115 , pp. 1378-1382
    • Husni, R.N.1    Goldstein, L.S.2    Arroliga, A.C.3    Hall, G.S.4    Fatica, C.5    Stoller, J.K.6
  • 5
    • 84863875062 scopus 로고    scopus 로고
    • Control of an outbreak of Acinetobacter baumannii infections using vaporized hydrogen peroxide
    • PMID: 22727825
    • Chmielarczyk A, Higgins PG, Wojkowska-Mach J, Synowiec E, Zander E, Romaniszyn D, et al. (2012) Control of an outbreak of Acinetobacter baumannii infections using vaporized hydrogen peroxide. J Hosp Infect 81: 239-245. https://doi.org/10.1016/j.jhin.2012.05.010 PMID: 22727825
    • (2012) J Hosp Infect , vol.81 , pp. 239-245
    • Chmielarczyk, A.1    Higgins, P.G.2    Wojkowska-Mach, J.3    Synowiec, E.4    Zander, E.5    Romaniszyn, D.6
  • 6
    • 0029898966 scopus 로고    scopus 로고
    • Comparison of outbreak and nonoutbreak Acinetobacter baumannii strains by genotypic and phenotypic methods
    • PMID: 8735109
    • Dijkshoorn L, Aucken H, Gerner Smidt P, Janssen P, Kaufmann ME, Garaizar J, et al. (1996) Comparison of outbreak and nonoutbreak Acinetobacter baumannii strains by genotypic and phenotypic methods. J Clin Microbiol 34: 1519-1525. PMID: 8735109
    • (1996) J Clin Microbiol , vol.34 , pp. 1519-1525
    • Dijkshoorn, L.1    Aucken, H.2    Gerner Smidt, P.3    Janssen, P.4    Kaufmann, M.E.5    Garaizar, J.6
  • 7
    • 1342345193 scopus 로고    scopus 로고
    • Identification of a new geographically widespread multiresistant Acinetobacter baumannii clone from European hospitals
    • PMID: 14990262
    • van Dessel H, Dijkshoorn L, van der Reijden T, Bakker N, Paauw A, van den Broek P, et al. (2004) Identification of a new geographically widespread multiresistant Acinetobacter baumannii clone from European hospitals. Res Microbiol 155: 105-112. https://doi.org/10.1016/j.resmic.2003.10.003 PMID: 14990262
    • (2004) Res Microbiol , vol.155 , pp. 105-112
    • Van Dessel, H.1    Dijkshoorn, L.2    Van Der Reijden, T.3    Bakker, N.4    Paauw, A.5    Van Den Broek, P.6
  • 8
    • 77950233016 scopus 로고    scopus 로고
    • Global spread of carbapenem-resistant Acinetobacter baumannii
    • PMID: 19996144
    • Higgins PG, Dammhayn C, Hackel M, Seifert H (2010) Global spread of carbapenem-resistant Acinetobacter baumannii. J Antimicrob Chemother 65: 233-238. https://doi.org/10.1093/jac/dkp428 PMID: 19996144
    • (2010) J Antimicrob Chemother , vol.65 , pp. 233-238
    • Higgins, P.G.1    Dammhayn, C.2    Hackel, M.3    Seifert, H.4
  • 9
    • 77955627513 scopus 로고    scopus 로고
    • The population structure of Acinetobacter baumannii: Expanding multiresistant clones from an ancestral susceptible genetic pool
    • PMID: 20383326
    • Diancourt L, Passet V, Nemec A, Dijkshoorn L, Brisse S (2010) The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool. PloS ONE 5: e10034. https://doi.org/10.1371/journal.pone.0010034 PMID: 20383326
    • (2010) PloS ONE , vol.5
    • Diancourt, L.1    Passet, V.2    Nemec, A.3    Dijkshoorn, L.4    Brisse, S.5
  • 10
    • 84867612746 scopus 로고    scopus 로고
    • Molecular epidemiology of Acinetobacter baumannii bloodstream isolates obtained in the United States from 1995 to 2004 using rep-PCR and multilocus sequence typing
    • PMID: 22895032
    • Higgins PG, Janßen K, Fresen MM, Wisplinghoff H, Seifert H (2012) Molecular epidemiology of Acinetobacter baumannii bloodstream isolates obtained in the United States from 1995 to 2004 using rep-PCR and multilocus sequence typing. J Clin Microbiol 50: 3493-3500. https://doi.org/10.1128/JCM.01759-12 PMID: 22895032
    • (2012) J Clin Microbiol , vol.50 , pp. 3493-3500
    • Higgins, P.G.1    Janßen, K.2    Fresen, M.M.3    Wisplinghoff, H.4    Seifert, H.5
  • 11
    • 84963607034 scopus 로고    scopus 로고
    • Head-to-head comparison of two multi-locus sequence typing (MLST) schemes for characterization of Acinetobacter baumannii outbreak and sporadic isolates
    • PMID: 27071077
    • Tomaschek F, Higgins PG, Stefanik D, Wisplinghoff H, Seifert H (2016) Head-to-head comparison of two multi-locus sequence typing (MLST) schemes for characterization of Acinetobacter baumannii outbreak and sporadic isolates. PloS ONE 11: e0153014. https://doi.org/10.1371/journal.pone.0153014 PMID: 27071077
    • (2016) PloS ONE , vol.11
    • Tomaschek, F.1    Higgins, P.G.2    Stefanik, D.3    Wisplinghoff, H.4    Seifert, H.5
  • 12
    • 33645707707 scopus 로고    scopus 로고
    • Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157: H7 Salmonella, and Shigella for PulseNet
    • PMID: 16602980
    • Ribot EM, Fair MA, Gautom R, Cameron DN, Hunter SB, Swaminathan B, et al. (2006) Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157: H7 Salmonella, and Shigella for PulseNet. Foodborne Pathog Dis 3: 59-67. https://doi.org/10.1089/fpd.2006.3.59 PMID: 16602980
    • (2006) Foodborne Pathog Dis , vol.3 , pp. 59-67
    • Ribot, E.M.1    Fair, M.A.2    Gautom, R.3    Cameron, D.N.4    Hunter, S.B.5    Swaminathan, B.6
  • 13
    • 12444263239 scopus 로고    scopus 로고
    • Harmonization of pulsed-field gel electrophoresis protocols for epidemiological typing of strains of methicillin-resistant Staphylococcus aureus: A single approach developed by consensus in 10 European laboratories and its application for tracing the spread of related strains
    • PMID: 12682148
    • Murchan S, Kaufmann ME, Deplano A, de Ryck R, Struelens M, Zinn CE, et al (2003) Harmonization of pulsed-field gel electrophoresis protocols for epidemiological typing of strains of methicillin-resistant Staphylococcus aureus: a single approach developed by consensus in 10 European laboratories and its application for tracing the spread of related strains. J Clin Microbiol 41: 1574-1585. https://doi.org/10.1128/JCM.41.4.1574-1585.2003 PMID: 12682148
    • (2003) J Clin Microbiol , vol.41 , pp. 1574-1585
    • Murchan, S.1    Kaufmann, M.E.2    Deplano, A.3    De Ryck, R.4    Struelens, M.5    Zinn, C.E.6
  • 14
    • 24744449531 scopus 로고    scopus 로고
    • Standardization and interlaboratory reproducibility assessment of pulsed-field gel electrophoresis-generated fingerprints of Acinetobacter baumannii
    • PMID: 16145073
    • Seifert H, Dolzani L, Bressan R, van der Reijden T, van Strijen B, Stefanik D, et al. (2005) Standardization and interlaboratory reproducibility assessment of pulsed-field gel electrophoresis-generated fingerprints of Acinetobacter baumannii. J Clin Microbiol 43: 4328-4335. https://doi.org/10.1128/JCM.43.9.4328-4335.2005 PMID: 16145073
    • (2005) J Clin Microbiol , vol.43 , pp. 4328-4335
    • Seifert, H.1    Dolzani, L.2    Bressan, R.3    Van Der Reijden, T.4    Van Strijen, B.5    Stefanik, D.6
  • 15
    • 84857089291 scopus 로고    scopus 로고
    • Interlaboratory reproducibility of DiversiLab rep-PCR typing and clustering of Acinetobacter baumannii isolates
    • PMID: 21903821
    • Higgins PG, Hujer AM, Hujer KM, Bonomo RA, Seifert H (2012) Interlaboratory reproducibility of DiversiLab rep-PCR typing and clustering of Acinetobacter baumannii isolates. J Med Microbiol 61: 137-141. https://doi.org/10.1099/jmm.0.036046-0 PMID: 21903821
    • (2012) J Med Microbiol , vol.61 , pp. 137-141
    • Higgins, P.G.1    Hujer, A.M.2    Hujer, K.M.3    Bonomo, R.A.4    Seifert, H.5
  • 16
  • 17
    • 84940043454 scopus 로고    scopus 로고
    • Defining and evaluating a core genome multilocus sequence typing scheme for whole-genome sequence-based typing of Listeria monocytogenes
    • PMID: 26135865
    • Ruppitsch W, Pietzka A, Prior K, Bletz S, Fernandez HL, Allerberger F, et al. (2015) Defining and evaluating a core genome multilocus sequence typing scheme for whole-genome sequence-based typing of Listeria monocytogenes. J Clin Microbiol 53: 2869-2876. https://doi.org/10.1128/JCM.01193-15 PMID: 26135865
    • (2015) J Clin Microbiol , vol.53 , pp. 2869-2876
    • Ruppitsch, W.1    Pietzka, A.2    Prior, K.3    Bletz, S.4    Fernandez, H.L.5    Allerberger, F.6
  • 18
    • 84862318037 scopus 로고    scopus 로고
    • A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance
    • PMID: 22674929
    • Eyre DW, Golubchik T, Gordon N, Bowden R, Piazza P, Batty EM, et al. (2012) A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance. BMJ Open 2: e001124. https://doi.org/10.1136/bmjopen-2012-001124 PMID: 22674929
    • (2012) BMJ Open , vol.2 , pp. e001124
    • Eyre, D.W.1    Golubchik, T.2    Gordon, N.3    Bowden, R.4    Piazza, P.5    Batty, E.M.6
  • 19
    • 79960609901 scopus 로고    scopus 로고
    • Prospective genomic characterization of the German Enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
    • PMID: 21799941
    • Mellmann A, Harmsen D, Cummings CA, Zentz EB, Leopold SR, Rico A, et al. (2011) Prospective genomic characterization of the German Enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PloS ONE 6: e22751. https://doi.org/10.1371/journal.pone.0022751 PMID: 21799941
    • (2011) PloS ONE , vol.6
    • Mellmann, A.1    Harmsen, D.2    Cummings, C.A.3    Zentz, E.B.4    Leopold, S.R.5    Rico, A.6
  • 20
    • 84889793277 scopus 로고    scopus 로고
    • Precise dissection of an Escherichia coli O157:H7 outbreak by single nucleotide polymorphism analysis
    • PMID: 24048526
    • Turabelidze G, Lawrence SJ, Gao H, Sodergren E, Weinstock GM, Abubucker S, et al. (2013) Precise dissection of an Escherichia coli O157:H7 outbreak by single nucleotide polymorphism analysis. J Clin Microbiol 51: 3950-3954. https://doi.org/10.1128/JCM.01930-13 PMID: 24048526
    • (2013) J Clin Microbiol , vol.51 , pp. 3950-3954
    • Turabelidze, G.1    Lawrence, S.J.2    Gao, H.3    Sodergren, E.4    Weinstock, G.M.5    Abubucker, S.6
  • 21
    • 84926620463 scopus 로고    scopus 로고
    • WGS analysis and interpretation in clinical and public health microbiology laboratories: What are the requirements and how do existing tools compare?
    • PMID: 25437808
    • Wyres KL, Conway TC, Garg S, Queiroz C, Reumann M, Holt K,et al. (2014) WGS analysis and interpretation in clinical and public health microbiology laboratories: what are the requirements and how do existing tools compare? Pathogens 3: 437-458. https://doi.org/10.3390/pathogens3020437 PMID: 25437808
    • (2014) Pathogens , vol.3 , pp. 437-458
    • Wyres, K.L.1    Conway, T.C.2    Garg, S.3    Queiroz, C.4    Reumann, M.5    Holt, K.6
  • 22
    • 84890558766 scopus 로고    scopus 로고
    • Bacterial genome sequencing in the clinic: Bioinformatic challenges and solutions
    • PMID: 24281148
    • Fricke W, Rasko DA (2014) Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions. Nat Rev Genet 15: 49-55. https://doi.org/10.1038/nrg3624 PMID: 24281148
    • (2014) Nat Rev Genet , vol.15 , pp. 49-55
    • Fricke, W.1    Rasko, D.A.2
  • 23
    • 70350513568 scopus 로고    scopus 로고
    • Outbreak of carbapenem-resistant Acinetobacter baumannii carrying the carbapenemase OXA-23 in a German University Medical Centre
    • PMID: 19589905
    • Kohlenberg A, Brummer S, Higgins PG, Sohr D, Piening BC, de Grahl C, et al. (2009) Outbreak of carbapenem-resistant Acinetobacter baumannii carrying the carbapenemase OXA-23 in a German University Medical Centre. J Med Microbiol 58: 1499-1507. https://doi.org/10.1099/jmm.0.012302-0 PMID: 19589905
    • (2009) J Med Microbiol , vol.58 , pp. 1499-1507
    • Kohlenberg, A.1    Brummer, S.2    Higgins, P.G.3    Sohr, D.4    Piening, B.C.5    De Grahl, C.6
  • 24
    • 84958039362 scopus 로고    scopus 로고
    • Outbreak of carbapenem-resistant Acinetobacter baumannii in the intensive care unit: A multi-level strategic management approach
    • Molter G, Seifert H, Mandraka F, Kasper G, Weidmann B, Hornei B, et al. (2016) Outbreak of carbapenem-resistant Acinetobacter baumannii in the intensive care unit: a multi-level strategic management approach. J Hospital Infect 92: 194-198.
    • (2016) J Hospital Infect , vol.92 , pp. 194-198
    • Molter, G.1    Seifert, H.2    Mandraka, F.3    Kasper, G.4    Weidmann, B.5    Hornei, B.6
  • 26
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • PMID: 18349386
    • Zerbino DR, Birney E (2008) Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829. https://doi.org/10.1101/gr.074492.107 PMID: 18349386
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 27
    • 62349132559 scopus 로고    scopus 로고
    • Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
    • PMID: 19087322
    • Corander J, Marttinen P, Siren J, Tang J (2008) Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 9: 539. https://doi.org/10.1186/1471-2105-9-539 PMID: 19087322
    • (2008) BMC Bioinformatics , vol.9 , pp. 539
    • Corander, J.1    Marttinen, P.2    Siren, J.3    Tang, J.4
  • 28
    • 24744461705 scopus 로고    scopus 로고
    • Development of a multilocus sequence typing scheme for characterization of clinical isolates of Acinetobacter baumannii
    • PMID: 16145081
    • Bartual SG, Seifert H, Hippler C, Luzon MAD, Wisplinghoff H, Rodriguez-Valera F (2005) Development of a multilocus sequence typing scheme for characterization of clinical isolates of Acinetobacter baumannii. J Clin Microbiol 43: 4382-4390. https://doi.org/10.1128/JCM.43.9.4382-4390.2005 PMID: 16145081
    • (2005) J Clin Microbiol , vol.43 , pp. 4382-4390
    • Bartual, S.G.1    Seifert, H.2    Hippler, C.3    Luzon, M.A.D.4    Wisplinghoff, H.5    Rodriguez-Valera, F.6
  • 29
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • PMID: 15034147
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res 32: 1792-1797. https://doi.org/10.1093/nar/gkh340 PMID: 15034147
    • (2004) Nucl Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 30
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
    • PMID: 20224823
    • Price MN, Dehal PS, Arkin AP (2010) FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments. PloS ONE 5: e9490. https://doi.org/10.1371/journal.pone.0009490 PMID: 20224823
    • (2010) PloS ONE , vol.5
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 31
    • 38649092410 scopus 로고    scopus 로고
    • Dendroscope: An interactive viewer for large phylogenetic trees
    • PMID: 18034891
    • Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R (2007) Dendroscope: An interactive viewer for large phylogenetic trees. BMC Bioinformatics 8: 460. https://doi.org/10.1186/1471-2105-8-460 PMID: 18034891
    • (2007) BMC Bioinformatics , vol.8 , pp. 460
    • Huson, D.H.1    Richter, D.C.2    Rausch, C.3    Dezulian, T.4    Franz, M.5    Rupp, R.6
  • 32
    • 46249106584 scopus 로고    scopus 로고
    • Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group
    • PMID: 18411315
    • Iacono M, Villa L, Fortini D, Bordoni R, Imperi F, Bonnal RJP, et al. (2008) Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group. Antimicrob Agents Chemother 52: 2616-2625. https://doi.org/10.1128/AAC.01643-07 PMID: 18411315
    • (2008) Antimicrob Agents Chemother , vol.52 , pp. 2616-2625
    • Iacono, M.1    Villa, L.2    Fortini, D.3    Bordoni, R.4    Imperi, F.5    Bonnal, R.J.P.6
  • 33
    • 13144252236 scopus 로고    scopus 로고
    • Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
    • PMID: 9501229
    • Maiden MCJ, Bygraves JA, Feil E, Morelli G, Russell JE, Urwin R, et al (1998) Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 95: 3140-3145. PMID: 9501229
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 3140-3145
    • Maiden, M.C.J.1    Bygraves, J.A.2    Feil, E.3    Morelli, G.4    Russell, J.E.5    Urwin, R.6
  • 34
    • 84936945129 scopus 로고    scopus 로고
    • Investigation of a possible outbreak of carbapenem-resistant Acinetobacter baumannii in Odense, Denmark using PFGE, MLST and whole-genome-based SNPs
    • PMID: 25795772
    • Hammerum AM, Hansen F, Skov MN, Stegger M, Andersen PS, Holm A, et al. (2015) Investigation of a possible outbreak of carbapenem-resistant Acinetobacter baumannii in Odense, Denmark using PFGE, MLST and whole-genome-based SNPs. J Antimicrob Chemother 70: 1965-1968. https://doi.org/10.1093/jac/dkv072 PMID: 25795772
    • (2015) J Antimicrob Chemother , vol.70 , pp. 1965-1968
    • Hammerum, A.M.1    Hansen, F.2    Skov, M.N.3    Stegger, M.4    Andersen, P.S.5    Holm, A.6
  • 35
    • 84959511266 scopus 로고    scopus 로고
    • Utility of whole-genome sequencing in characterizing Acinetobacter epidemiology and analyzing hospital outbreaks
    • PMID: 26699703
    • Fitzpatrick MA, Ozer EA, Hauser AR (2016) Utility of whole-genome sequencing in characterizing Acinetobacter epidemiology and analyzing hospital outbreaks. J Clin Microbiol 54: 593-612. https://doi.org/10.1128/JCM.01818-15 PMID: 26699703
    • (2016) J Clin Microbiol , vol.54 , pp. 593-612
    • Fitzpatrick, M.A.1    Ozer, E.A.2    Hauser, A.R.3
  • 36
    • 84925263609 scopus 로고    scopus 로고
    • Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology
    • PMID: 25631811
    • Salipante SJ, SenGupta DJ, Cummings LA, Land TA, Hoogestraat DR, Cookson BT (2015) Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology. J Clin Microbiol 53: 1072-1079. https://doi.org/10.1128/JCM.03385-14 PMID: 25631811
    • (2015) J Clin Microbiol , vol.53 , pp. 1072-1079
    • Salipante, S.J.1    SenGupta, D.J.2    Cummings, L.A.3    Land, T.A.4    Hoogestraat, D.R.5    Cookson, B.T.6
  • 37
    • 84926025368 scopus 로고    scopus 로고
    • Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumannii in Birmingham, England
    • PMID: 25414729
    • Halachev M, Chan J, Constantinidou C, Cumley N, Bradley C, Smith-Banks M, et al. (2014) Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumannii in Birmingham, England. Genome Med 6: 70. https://doi.org/10.1186/s13073-014-0070-x PMID: 25414729
    • (2014) Genome Med , vol.6 , pp. 70
    • Halachev, M.1    Chan, J.2    Constantinidou, C.3    Cumley, N.4    Bradley, C.5    Smith-Banks, M.6
  • 38
    • 79958826431 scopus 로고    scopus 로고
    • Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy
    • PMID: 21565804
    • Hornsey M, Loman N, Wareham DW, Ellington MJ, Pallen MJ, Turton JF, et al. (2011) Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy. J Antimicrob Chemother 66: 1499-1503. https://doi.org/10.1093/jac/dkr168 PMID: 21565804
    • (2011) J Antimicrob Chemother , vol.66 , pp. 1499-1503
    • Hornsey, M.1    Loman, N.2    Wareham, D.W.3    Ellington, M.J.4    Pallen, M.J.5    Turton, J.F.6
  • 39
    • 78649667671 scopus 로고    scopus 로고
    • In vivo selection of a missense mutation in adeR and conversion of the novel blaOXA-164 into blaOXA-58 in carbapenem-resistant Acinetobacter baumannii isolated from a hospitalized patient
    • PMID: 20921306
    • Higgins PG, Schneiders T, Hamprecht A, Seifert H (2010) In vivo selection of a missense mutation in adeR and conversion of the novel blaOXA-164 into blaOXA-58 in carbapenem-resistant Acinetobacter baumannii isolated from a hospitalized patient. Antimicrob Agents Chemother 54: 5021-5027. https://doi.org/10.1128/AAC.00598-10 PMID: 20921306
    • (2010) Antimicrob Agents Chemother , vol.54 , pp. 5021-5027
    • Higgins, P.G.1    Schneiders, T.2    Hamprecht, A.3    Seifert, H.4
  • 41
    • 84903792383 scopus 로고    scopus 로고
    • Whole-genome-based Mycobacterium tuberculosis surveillance: A standardized, portable, and expandable approach
    • PMID: 24789177
    • Kohl TA, Diel R, Harmsen D, Rothgaenger J, Walter KM, Merker M, et al. (2014) Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach. J Clin Microbiol 52: 2479-2486. https://doi.org/10.1128/JCM.00567-14 PMID: 24789177
    • (2014) J Clin Microbiol , vol.52 , pp. 2479-2486
    • Kohl, T.A.1    Diel, R.2    Harmsen, D.3    Rothgaenger, J.4    Walter, K.M.5    Merker, M.6
  • 42
    • 84937722829 scopus 로고    scopus 로고
    • Design and application of a core genome multilocus sequence typing scheme for investigation of Legionnaires' disease incidents
    • Moran-Gilad J, Prior K, Yakunin E, Harrison TG, Underwood A, Lazarovitch T, et al. (2015) Design and application of a core genome multilocus sequence typing scheme for investigation of Legionnaires' disease incidents. Eurosurveillance 20: 21087.
    • (2015) Eurosurveillance , vol.20 , pp. 21087
    • Moran-Gilad, J.1    Prior, K.2    Yakunin, E.3    Harrison, T.G.4    Underwood, A.5    Lazarovitch, T.6
  • 43
    • 84927549506 scopus 로고    scopus 로고
    • Rapid high resolution genotyping of Francisella tularensis by whole genome sequence comparison of annotated genes ("MLST+")
    • Antwerpen MH, Prior K, Mellmann A, Hoppner S, Splettstoesser WD, Harmsen D (2015) Rapid high resolution genotyping of Francisella tularensis by whole genome sequence comparison of annotated genes ("MLST+"). PloS ONE 10.
    • (2015) PloS ONE , vol.10
    • Antwerpen, M.H.1    Prior, K.2    Mellmann, A.3    Hoppner, S.4    Splettstoesser, W.D.5    Harmsen, D.6
  • 44
    • 84903782426 scopus 로고    scopus 로고
    • Bacterial whole-genome sequencing revisited: Portable, scalable, and standardized analysis for typing and detection of virulence and antibiotic resistance genes
    • PMID: 24759713
    • Leopold SR, Goering RV, Witten A, Harmsen D, Mellmann A (2014) Bacterial whole-genome sequencing revisited: Portable, scalable, and standardized analysis for typing and detection of virulence and antibiotic resistance genes. J Clin Microbiol 52: 2365-2370. https://doi.org/10.1128/JCM.00262-14 PMID: 24759713
    • (2014) J Clin Microbiol , vol.52 , pp. 2365-2370
    • Leopold, S.R.1    Goering, R.V.2    Witten, A.3    Harmsen, D.4    Mellmann, A.5
  • 45
    • 57349139420 scopus 로고    scopus 로고
    • Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii
    • PMID: 18931120
    • Adams MD, Goglin K, Molyneaux N, Hujer KM, Lavender H, Jamison JJ, et al. (2008) Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii. J Bacteriol 190: 8053-8064. https://doi.org/10.1128/JB.00834-08 PMID: 18931120
    • (2008) J Bacteriol , vol.190 , pp. 8053-8064
    • Adams, M.D.1    Goglin, K.2    Molyneaux, N.3    Hujer, K.M.4    Lavender, H.5    Jamison, J.J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.