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Volumn 20, Issue 28, 2015, Pages

Design and application of a core genome multilocus sequence typing scheme for investigation of Legionnaires’ disease incidents

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CORE GENOME MULTILOCUS SEQUENCE TYPING; HUMAN; HUMIDIFIER; LEGIONNAIRE DISEASE; MOLECULAR GENETICS; NEXT GENERATION SEQUENCING; NONHUMAN; POLYMERASE CHAIN REACTION; SINGLE NUCLEOTIDE POLYMORPHISM; WHOLE GENOME SEQUENCING; BACTERIAL GENOME; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETIC VARIATION; GENETICS; ISOLATION AND PURIFICATION; LEGIONELLA PNEUMOPHILA; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; MULTILOCUS SEQUENCE TYPING; PROCEDURES;

EID: 84937722829     PISSN: 1025496X     EISSN: 15607917     Source Type: Journal    
DOI: 10.2807/1560-7917.ES2015.20.28.21186     Document Type: Article
Times cited : (62)

References (35)
  • 1
    • 0036314980 scopus 로고    scopus 로고
    • Legionella and Legionnaires' disease: 25 years of investigation
    • Fields BS, Benson RF, Besser RE. Legionella and Legionnaires' disease: 25 years of investigation. Clin Microbiol Rev. 2002;15(3):506-26. http://dx.doi.org/10.1128/CMR.15.3.506- 526.2002 PMID:12097254
    • (2002) Clin Microbiol Rev , vol.15 , Issue.3 , pp. 506-526
    • Fields, B.S.1    Benson, R.F.2    Besser, R.E.3
  • 2
    • 37149000256 scopus 로고    scopus 로고
    • Legionella spp. and Legionnaires' disease
    • Diederen BM. Legionella spp. and Legionnaires' disease. J Infect. 2008;56(1):1-12. http://dx.doi.org/10.1016/j. jinf.2007.09.010 PMID:17980914
    • (2008) J Infect , vol.56 , Issue.1 , pp. 1-12
    • Diederen, B.M.1
  • 3
    • 0036642514 scopus 로고    scopus 로고
    • Distribution of Legionella species and serogroups isolated by culture in patients with sporadic communityacquired legionellosis: An international collaborative survey
    • Yu VL, Plouffe JF, Pastoris MC, Stout JE, Schousboe M, Widmer A, et al. Distribution of Legionella species and serogroups isolated by culture in patients with sporadic communityacquired legionellosis: an international collaborative survey. J Infect Dis. 2002;186(1):127-8. http://dx.doi. org/10.1086/341087
    • (2002) J Infect Dis , vol.186 , Issue.1 , pp. 127-128
    • Yu, V.L.1    Plouffe, J.F.2    Pastoris, M.C.3    Stout, J.E.4    Schousboe, M.5    Widmer, A.6
  • 7
    • 18544387792 scopus 로고    scopus 로고
    • Consensus sequence-based scheme for epidemiological typing of clinical and environmental isolates of Legionella pneumophila
    • Gaia V, Fry NK, Afshar B, Lück PC, Meugnier H, Etienne J, et al. Consensus sequence-based scheme for epidemiological typing of clinical and environmental isolates of Legionella pneumophila. J Clin Microbiol. 2005;43(5):2047-52. http:// dx.doi.org/10.1128/JCM.43.5.2047-2052.2005
    • (2005) J Clin Microbiol , vol.43 , Issue.5 , pp. 2047-2052
    • Gaia, V.1    Fry, N.K.2    Afshar, B.3    Lück, P.C.4    Meugnier, H.5    Etienne, J.6
  • 8
    • 34250678922 scopus 로고    scopus 로고
    • Addition of neuA, the gene encoding N-acylneuraminate cytidylyl transferase, increases the discriminatory ability of the consensus sequence-based scheme for typing Legionella pneumophila serogroup 1 strains
    • Ratzow S, Gaia V, Helbig JH, Fry NK, Lück PC. Addition of neuA, the gene encoding N-acylneuraminate cytidylyl transferase, increases the discriminatory ability of the consensus sequence-based scheme for typing Legionella pneumophila serogroup 1 strains. J Clin Microbiol. 2007;45(6):1965-8. http:// dx.doi.org/10.1128/JCM.00261-07 PMID:17409215
    • (2007) J Clin Microbiol , vol.45 , Issue.6 , pp. 1965-1968
    • Ratzow, S.1    Gaia, V.2    Helbig, J.H.3    Fry, N.K.4    Lück, P.C.5
  • 9
    • 67349117420 scopus 로고    scopus 로고
    • Distribution of Legionella pneumophila serogroups, monoclonal antibody subgroups and DNA sequence types in recent clinical and environmental isolates from England and Wales (2000-2008)
    • Harrison TG, Afshar B, Doshi N, Fry NK, Lee JV. Distribution of Legionella pneumophila serogroups, monoclonal antibody subgroups and DNA sequence types in recent clinical and environmental isolates from England and Wales (2000-2008). Eur J Clin Microbiol Infect Dis. 2009;28(7):781-91. http://dx.doi. org/10.1007/s10096-009-0705-9 PMID:19156453
    • (2009) Eur J Clin Microbiol Infect Dis , vol.28 , Issue.7 , pp. 781-791
    • Harrison, T.G.1    Afshar, B.2    Doshi, N.3    Fry, N.K.4    Lee, J.V.5
  • 11
    • 84866706759 scopus 로고    scopus 로고
    • An outbreak of Legionnaires' disease associated with a display spa pool in retail premises, Stoke-on-Trent, United Kingdom, July 2012
    • pii=20271
    • Coetzee N, Duggal H, Hawker J, Ibbotson S, Harrison TG, Phin N, et al. An outbreak of Legionnaires' disease associated with a display spa pool in retail premises, Stoke-on-Trent, United Kingdom, July 2012. Euro Surveill. 2012;17(37):pii=20271.
    • (2012) Euro Surveill , vol.17 , Issue.37
    • Coetzee, N.1    Duggal, H.2    Hawker, J.3    Ibbotson, S.4    Harrison, T.G.5    Phin, N.6
  • 12
    • 84882712754 scopus 로고    scopus 로고
    • Rapid bacterial genome sequencing: Methods and applications in clinical microbiology
    • Bertelli C, Greub G. Rapid bacterial genome sequencing: methods and applications in clinical microbiology. Clin Microbiol Infect. 2013;19(9):803-13. http://dx.doi. org/10.1111/1469-0691.12217 PMID:23601179
    • (2013) Clin Microbiol Infect , vol.19 , Issue.9 , pp. 803-813
    • Bertelli, C.1    Greub, G.2
  • 13
    • 84903782426 scopus 로고    scopus 로고
    • Bacterial whole-genome sequencing revisited: Portable, scalable, and standardized analysis for typing and detection of virulence and antibiotic resistance genes
    • Leopold SR, Goering RV, Witten A, Harmsen D, Mellmann A. Bacterial whole-genome sequencing revisited: portable, scalable, and standardized analysis for typing and detection of virulence and antibiotic resistance genes. J Clin Microbiol. 2014;52(7):2365-70. http://dx.doi.org/10.1128/JCM.00262-14 PMID:24759713
    • (2014) J Clin Microbiol , vol.52 , Issue.7 , pp. 2365-2370
    • Leopold, S.R.1    Goering, R.V.2    Witten, A.3    Harmsen, D.4    Mellmann, A.5
  • 14
    • 84901610271 scopus 로고    scopus 로고
    • Whole genome sequencing as a tool to investigate a cluster of seven cases of listeriosis in Austria and Germany, 2011-2013
    • Schmid D, Allerberger F, Huhulescu S, Pietzka A, Amar C, Kleta S, et al. Whole genome sequencing as a tool to investigate a cluster of seven cases of listeriosis in Austria and Germany, 2011-2013. Clin Microbiol Infect. 2014;20(5):431-6. http:// dx.doi.org/10.1111/1469-0691.12638
    • (2014) Clin Microbiol Infect , vol.20 , Issue.5 , pp. 431-436
    • Schmid, D.1    Allerberger, F.2    Huhulescu, S.3    Pietzka, A.4    Amar, C.5    Kleta, S.6
  • 15
    • 79960609901 scopus 로고    scopus 로고
    • Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
    • Mellmann A, Harmsen D, Cummings CA, Zentz EB, Leopold SR, Rico A, et al. Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS ONE. 2011;6(7):e22751. http://dx.doi.org/10.1371/journal. pone.0022751
    • (2011) PLoS ONE , vol.6 , Issue.7
    • Mellmann, A.1    Harmsen, D.2    Cummings, C.A.3    Zentz, E.B.4    Leopold, S.R.5    Rico, A.6
  • 18
    • 0036460269 scopus 로고    scopus 로고
    • Pan-European study on culture-proven Legionnaires' disease: Distribution of Legionella pneumophila serogroups and monoclonal subgroups
    • Helbig JH, Bernander S, Castellani Pastoris M, Etienne J, Gaia V, Lauwers S, et al. Pan-European study on culture-proven Legionnaires' disease: distribution of Legionella pneumophila serogroups and monoclonal subgroups. Eur J Clin Microbiol Infect Dis. 2002;21(10):710-6. http://dx.doi.org/10.1007/ s10096-002-0820-3
    • (2002) Eur J Clin Microbiol Infect Dis , vol.21 , Issue.10 , pp. 710-716
    • Helbig, J.H.1    Bernander, S.2    Castellani Pastoris, M.3    Etienne, J.4    Gaia, V.5    Lauwers, S.6
  • 19
    • 0031977470 scopus 로고    scopus 로고
    • Sequence-based classification scheme for the genus Legionella targeting the mip gene
    • PMID:9620377
    • Ratcliff RM, Lanser JA, Manning PA, Heuzenroeder MW. Sequence-based classification scheme for the genus Legionella targeting the mip gene. J Clin Microbiol. 1998;36(6):1560-7. PMID:9620377
    • (1998) J Clin Microbiol , vol.36 , Issue.6 , pp. 1560-1567
    • Ratcliff, R.M.1    Lanser, J.A.2    Manning, P.A.3    Heuzenroeder, M.W.4
  • 20
    • 85181417488 scopus 로고    scopus 로고
    • London: HPA [Accessed 14 Jul 2015]
    • Health Protection Agency. mip gene sequence database. London: HPA. [Accessed 14 Jul 2015]. Available from: http:// webarchive.nationalarchives.gov.uk/20140714084352/ http://www.hpa.org.uk/web/HPAweb&HPAwebStandard/ HPAweb_C/1195733805138
    • Mip gene sequence database
    • Health Protection Agency1
  • 22
    • 77249122692 scopus 로고    scopus 로고
    • Development of an online tool for the European Working Group for Legionella Infections sequence-based typing, including automatic quality assessment and data submission
    • Cianciotto NP, Abu Kwaik Y, Edelstein PH, Fields BS, Geary DF, Harrison TG, Joseph CA, Ratcliff RM, Stout JE, Swanson MS, eds. ASM Press: Washington; Chapter 44
    • Underwood AP, Bellamy W, Afshar B, Fry NK, Harrison TG. Development of an online tool for the European Working Group for Legionella Infections sequence-based typing, including automatic quality assessment and data submission. In: Cianciotto NP, Abu Kwaik Y, Edelstein PH, Fields BS, Geary DF, Harrison TG, Joseph CA, Ratcliff RM, Stout JE, Swanson MS, eds. Legionella: state of the art 30 years after its recognition. ASM Press: Washington; 2006: Chapter 44. pp. 250-2.
    • (2006) Legionella: State of the art 30 years after its recognition , pp. 250-252
    • Underwood, A.P.1    Bellamy, W.2    Afshar, B.3    Fry, N.K.4    Harrison, T.G.5
  • 23
    • 85181422301 scopus 로고    scopus 로고
    • London:HPA [Accessed 14 Jul 2015]
    • Health Protection Agency. Legionella SBT quality assessment. London:HPA. [Accessed 14 Jul 2015]. Available from: http:// www.hpa-bioinformatics.org.uk/cgi-bin/legionella/sbt/seq_ assemble_legionella1.cgi.
    • Legionella SBT quality assessment
    • Health Protection Agency1
  • 24
    • 84890837667 scopus 로고    scopus 로고
    • Comparison of the Legionella pneumophila population structure as determined by sequence-based typing and whole genome sequencing
    • Underwood AP, Jones G, Mentasti M, Fry NK, Harrison TG. Comparison of the Legionella pneumophila population structure as determined by sequence-based typing and whole genome sequencing. BMC Microbiol. 2013;13(1):302. http:// dx.doi.org/10.1186/1471-2180-13-302 PMID:24364868
    • (2013) BMC Microbiol , vol.13 , Issue.1 , pp. 302
    • Underwood, A.P.1    Jones, G.2    Mentasti, M.3    Fry, N.K.4    Harrison, T.G.5
  • 25
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990;215(3):403-10. http:// dx.doi.org/10.1016/S0022-2836(05)80360-2 PMID:2231712
    • (1990) J Mol Biol , vol.215 , Issue.3 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3    Myers, E.W.4    Lipman, D.J.5
  • 26
    • 84873467253 scopus 로고    scopus 로고
    • A pilot study of rapid whole-genome sequencing for the investigation of a Legionella outbreak
    • Reuter S, Harrison TG, Köser CU, Ellington MJ, Smith GP, Parkhill J, et al. A pilot study of rapid whole-genome sequencing for the investigation of a Legionella outbreak. BMJ Open. 2013;3(1):e002175. http://dx.doi.org/10.1136/ bmjopen-2012-002175
    • (2013) BMJ Open , vol.3 , Issue.1
    • Reuter, S.1    Harrison, T.G.2    Köser, C.U.3    Ellington, M.J.4    Smith, G.P.5    Parkhill, J.6
  • 27
    • 13144252236 scopus 로고    scopus 로고
    • Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
    • Maiden MC, Bygraves JA, Feil E, Morelli G, Russell JE, Urwin R, et al. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA. 1998;95(6):3140-5. http://dx.doi.org/10.1073/pnas.95.6.3140
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.6 , pp. 3140-3145
    • Maiden, M.C.1    Bygraves, J.A.2    Feil, E.3    Morelli, G.4    Russell, J.E.5    Urwin, R.6
  • 28
    • 84862093048 scopus 로고    scopus 로고
    • Ion torrent personal genome machine sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information
    • Vogel U, Szczepanowski R, Claus H, Jünemann S, Prior K, Harmsen D. Ion torrent personal genome machine sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information. J Clin Microbiol. 2012;50(6):1889-94. http://dx.doi.org/10.1128/ JCM.00038-12 PMID:22461678
    • (2012) J Clin Microbiol , vol.50 , Issue.6 , pp. 1889-1894
    • Vogel, U.1    Szczepanowski, R.2    Claus, H.3    Jünemann, S.4    Prior, K.5    Harmsen, D.6
  • 29
    • 84903792383 scopus 로고    scopus 로고
    • Whole-genome-based Mycobacterium tuberculosis surveillance: A standardized, portable, and expandable approach
    • Kohl TA, Diel R, Harmsen D, Rothgänger J, Walter KM, Merker M, et al. Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach. J Clin Microbiol. 2014;52(7):2479-86. http://dx.doi. org/10.1128/JCM.00567-14
    • (2014) J Clin Microbiol , vol.52 , Issue.7 , pp. 2479-2486
    • Kohl, T.A.1    Diel, R.2    Harmsen, D.3    Rothgänger, J.4    Walter, K.M.5    Merker, M.6
  • 30
    • 84910119775 scopus 로고    scopus 로고
    • Real-time investigation of a Legionella pneumophila outbreak using whole genome sequencing
    • Graham RM, Doyle CJ, Jennison AV. Real-time investigation of a Legionella pneumophila outbreak using whole genome sequencing. Epidemiol Infect. 2014;142(11):2347-51. http:// dx.doi.org/10.1017/S0950268814000375 PMID:24576553
    • (2014) Epidemiol Infect , vol.142 , Issue.11 , pp. 2347-2351
    • Graham, R.M.1    Doyle, C.J.2    Jennison, A.V.3
  • 31
    • 84904981685 scopus 로고    scopus 로고
    • ; ESCMID Study Group for Legionella Infections (ESGLI). Molecular epidemiology of Legionnaires' disease in Israel
    • Moran-Gilad J, Mentasti M, Lazarovitch T, Huberman Z, Stocki T, Sadik C, et al.; ESCMID Study Group for Legionella Infections (ESGLI). Molecular epidemiology of Legionnaires' disease in Israel. Clin Microbiol Infect. 2014;20(7):690-6. http://dx.doi. org/10.1111/1469-0691.12425
    • (2014) Clin Microbiol Infect , vol.20 , Issue.7 , pp. 690-696
    • Moran-Gilad, J.1    Mentasti, M.2    Lazarovitch, T.3    Huberman, Z.4    Stocki, T.5    Sadik, C.6
  • 32
    • 84857425543 scopus 로고    scopus 로고
    • Legionella pneumophila sequence type 1/ Paris pulsotype subtyping by spoligotyping
    • Ginevra C, Jacotin N, Diancourt L, Guigon G, Arquilliere R, Meugnier H, et al. Legionella pneumophila sequence type 1/ Paris pulsotype subtyping by spoligotyping. J Clin Microbiol. 2012;50(3):696-701. http://dx.doi.org/10.1128/JCM.06180-11
    • (2012) J Clin Microbiol , vol.50 , Issue.3 , pp. 696-701
    • Ginevra, C.1    Jacotin, N.2    Diancourt, L.3    Guigon, G.4    Arquilliere, R.5    Meugnier, H.6
  • 33
    • 34548246397 scopus 로고    scopus 로고
    • ; European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group on Epidemiological Markers (ESGEM). Guidelines for the validation and application of typing methods for use in bacterial epidemiology
    • van Belkum A, Tassios PT, Dijkshoorn L, Haeggman S, Cookson B, Fry NK, et al.; European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group on Epidemiological Markers (ESGEM). Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin Microbiol Infect. 2007;13(Suppl 3):1-46. http://dx.doi. org/10.1111/j.1469-0691.2007.01786.x
    • (2007) Clin Microbiol Infect , vol.13 , pp. 1-46
    • van Belkum, A.1    Tassios, P.T.2    Dijkshoorn, L.3    Haeggman, S.4    Cookson, B.5    Fry, N.K.6
  • 34
    • 84892372326 scopus 로고    scopus 로고
    • Neumonía por Legionella pneumophila asociada al uso de un humidificador doméstico en una niña inmunocompetente
    • Bonilla Escobar BA, Montero Rubio JC, Martínez Juárez G. Neumonía por Legionella pneumophila asociada al uso de un humidificador doméstico en una niña inmunocompetente. Med Clin (Barc). 2014;142(2):70-2. http://dx.doi.org/10.1016/j. medcli.2013.02.042 PMID:24022027
    • (2014) Med Clin (Barc) , vol.142 , Issue.2 , pp. 70-72
    • Bonilla Escobar, B.A.1    Montero Rubio, J.C.2    Martínez Juárez, G.3
  • 35
    • 84878820895 scopus 로고    scopus 로고
    • First outbreak of nosocomial Legionella infection in term neonates caused by a cold mist ultrasonic humidifier
    • Yiallouros PK, Papadouri T, Karaoli C, Papamichael E, Zeniou M, Pieridou-Bagatzouni D, et al. First outbreak of nosocomial Legionella infection in term neonates caused by a cold mist ultrasonic humidifier. Clin Infect Dis. 2013;57(1):48-56. http:// dx.doi.org/10.1093/cid/cit176
    • (2013) Clin Infect Dis , vol.57 , Issue.1 , pp. 48-56
    • Yiallouros, P.K.1    Papadouri, T.2    Karaoli, C.3    Papamichael, E.4    Zeniou, M.5    Pieridou-Bagatzouni, D.6


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