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Volumn 67, Issue 5, 2017, Pages 1607-1612

Defluviitalea raffinosedens sp. nov., a thermophilic, anaerobic, saccharolytic bacterium isolated from an anaerobic batch digester treating animal manure and rice straw

Author keywords

Defluviitalea raffinosedens; Defluviitaleaceae; Saccharolytic; Thermophilic

Indexed keywords

ACETIC ACID; ARABINOSE; BUTYRIC ACID; CARBON; CARDIOLIPIN; CELLOBIOSE; FATTY ACID; FRUCTOSE; GALACTOSE; GENOMIC DNA; GLUCOSE; GLYCOLIPID; ISOBUTYRIC ACID; LACTIC ACID; LACTOSE; MALTOSE; MANNOSE; PHOSPHOLIPID; PROPIONIC ACID; QUINONE DERIVATIVE; RAFFINOSE; RIBOSE; RNA 16S; SODIUM CHLORIDE; SUCROSE; VALERIC ACID; XYLOSE; BACTERIAL DNA; MANURE;

EID: 85020400934     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijsem.0.001664     Document Type: Article
Times cited : (24)

References (31)
  • 3
    • 84957001273 scopus 로고    scopus 로고
    • Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy
    • Campanaro S, Treu L, Kougias PG, Francisci DD, Valle G et al. Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy. Biotechnol Biofuels 2016;9:1–17.
    • (2016) Biotechnol Biofuels , vol.9 , pp. 1-17
    • Campanaro, S.1    Treu, L.2    Kougias, P.G.3    Francisci, D.D.4    Valle, G.5
  • 4
    • 33749858537 scopus 로고    scopus 로고
    • Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
    • García MH, Ivanova N, Kunin V, Warnecke F, Barry KW et al. Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol 2006;24: 1263–1269.
    • (2006) Nat Biotechnol , vol.24 , pp. 1263-1269
    • García, M.H.1    Ivanova, N.2    Kunin, V.3    Warnecke, F.4    Barry, K.W.5
  • 5
    • 84858753321 scopus 로고    scopus 로고
    • Diversity of a mesophilic lignocellulolytic microbial consortium which is useful for enhancement of biogas production
    • Yan L, Gao Y, Wang Y, Liu Q, Sun Z et al. Diversity of a mesophilic lignocellulolytic microbial consortium which is useful for enhancement of biogas production. Bioresour Technol 2012;111: 49–54.
    • (2012) Bioresour Technol , vol.111 , pp. 49-54
    • Yan, L.1    Gao, Y.2    Wang, Y.3    Liu, Q.4    Sun, Z.5
  • 6
    • 84924046414 scopus 로고    scopus 로고
    • Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
    • Stolze Y, Zakrzewski M, Maus I, Eikmeyer F, Jaenicke S et al. Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions. Biotechnol Biofuels 2015;8:14.
    • (2015) Biotechnol Biofuels , vol.8 , pp. 14
    • Stolze, Y.1    Zakrzewski, M.2    Maus, I.3    Eikmeyer, F.4    Jaenicke, S.5
  • 7
    • 79251587455 scopus 로고    scopus 로고
    • Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
    • Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H et al. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 2011;331:463–467.
    • (2011) Science , vol.331 , pp. 463-467
    • Hess, M.1    Sczyrba, A.2    Egan, R.3    Kim, T.W.4    Chokhawala, H.5
  • 8
    • 84903183552 scopus 로고    scopus 로고
    • Metataxonomic profiling and prediction of functional behaviour of wheat straw degrading microbial consortia
    • Jiménez DJ, Dini-Andreote F, Van Elsas JD. Metataxonomic profiling and prediction of functional behaviour of wheat straw degrading microbial consortia. Biotechnol Biofuels 2014;7:92.
    • (2014) Biotechnol Biofuels , vol.7 , pp. 92
    • Jiménez, D.J.1    Dini-Andreote, F.2    Van Elsas, J.D.3
  • 9
    • 84957818466 scopus 로고    scopus 로고
    • A multisubstrate approach for functional metagenomics-based screening for (Hemi) cellulases in two wheat straw-degrading microbial consortia unveils novel thermoalkaliphilic enzymes
    • Maruthamuthu M, Jiménez DJ, Stevens P, Van Elsas JD. A multisubstrate approach for functional metagenomics-based screening for (hemi) cellulases in two wheat straw-degrading microbial consortia unveils novel thermoalkaliphilic enzymes. BMC Genomics 2016;17:1–16.
    • (2016) BMC Genomics , vol.17 , pp. 1-16
    • Maruthamuthu, M.1    Jiménez, D.J.2    Stevens, P.3    Van Elsas, J.D.4
  • 11
    • 77956460746 scopus 로고    scopus 로고
    • Analysis of a thermophilic lignocellulose degrading microbial consortium and multi-species lignocellulolytic enzyme system
    • Wongwilaiwalin S, Rattanachomsri U, Laothanachareon T, Eurwilaichitr L, Igarashi Y et al. Analysis of a thermophilic lignocellulose degrading microbial consortium and multi-species lignocellulolytic enzyme system. Enzyme Microb Technol 2010;47: 283–290.
    • (2010) Enzyme Microb Technol , vol.47 , pp. 283-290
    • Wongwilaiwalin, S.1    Rattanachomsri, U.2    Laothanachareon, T.3    Eurwilaichitr, L.4    Igarashi, Y.5
  • 12
    • 84857930133 scopus 로고    scopus 로고
    • Characterization of Defluviitalea saccharophila gen. Nov., sp. nov., a thermophilic bacterium isolated from an upflow anaerobic filter treating abattoir wastewaters, and proposal of Defluviitaleaceae fam. nov
    • Jabari L, Gannoun H, Cayol JL, Hamdi M, Fauque G et al. Characterization of Defluviitalea saccharophila gen. nov., sp. nov., a thermophilic bacterium isolated from an upflow anaerobic filter treating abattoir wastewaters, and proposal of Defluviitaleaceae fam. nov. Int J Syst Evol Microbiol 2012;62:550–555.
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 550-555
    • Jabari, L.1    Gannoun, H.2    Cayol, J.L.3    Hamdi, M.4    Fauque, G.5
  • 13
    • 0020662646 scopus 로고
    • Isolation and characterization of Methanococcus mazei strain MC3
    • Touzel JP, Albagnac G. Isolation and characterization of Methanococcus mazei strain MC3. FEMS Microbiol Lett 1983;16:241–245.
    • (1983) FEMS Microbiol Lett , vol.16 , pp. 241-245
    • Touzel, J.P.1    Albagnac, G.2
  • 14
    • 77956868541 scopus 로고
    • A roll tube method for cultivation of strict anaerobes
    • Hungate R. A roll tube method for cultivation of strict anaerobes. Methods Microbiol 1969;3B:117–132.
    • (1969) Methods Microbiol , vol.3B , pp. 117-132
    • Hungate, R.1
  • 15
    • 79956338771 scopus 로고
    • The roll-tube method for cultivation of strict anaerobes
    • Hungate RE, Macy J. The roll-tube method for cultivation of strict anaerobes. Bull Ecol Res Comm 1973;17:123–126.
    • (1973) Bull Ecol Res Comm , vol.17 , pp. 123-126
    • Hungate, R.E.1    Macy, J.2
  • 17
    • 84880136388 scopus 로고    scopus 로고
    • Isolation and characterization of Keratinibaculum paraultunense gen. Nov., sp. nov., a novel thermophilic, anaerobic bacterium with keratinolytic activity
    • Huang Y, Sun Y, Ma S, Chen L, Zhang H et al. Isolation and characterization of Keratinibaculum paraultunense gen. nov., sp. nov., a novel thermophilic, anaerobic bacterium with keratinolytic activity. FEMS Microbiol Lett 2013;345:56–63.
    • (2013) FEMS Microbiol Lett , vol.345 , pp. 56-63
    • Huang, Y.1    Sun, Y.2    Ma, S.3    Chen, L.4    Zhang, H.5
  • 18
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011;28:2731–2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 19
    • 0030772775 scopus 로고    scopus 로고
    • Thermotoga hypogea sp. Nov., a xylanolytic, thermophilic bacterium from an oil-producing well
    • Fardeau ML, Ollivier B, Patel BK, Magot M, Thomas P et al. Thermotoga hypogea sp. nov., a xylanolytic, thermophilic bacterium from an oil-producing well. Int J Syst Bacteriol 1997;47:1013–1019.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 1013-1019
    • Fardeau, M.L.1    Ollivier, B.2    Patel, B.K.3    Magot, M.4    Thomas, P.5
  • 20
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • Gerhardt P, Murray RGE, Wood WA and Krieg NR (editors), Washington, DC: American Society for Microbiology
    • Smibert RM, Krieg NR. Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA and Krieg NR (editors). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology; 1994. pp. 607–654.
    • (1994) Methods for General and Molecular Bacteriology , pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 21
    • 0021836170 scopus 로고
    • A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria
    • Cord-Ruwisch R. A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbiol Methods 1985;4:33–36.
    • (1985) J Microbiol Methods , vol.4 , pp. 33-36
    • Cord-Ruwisch, R.1
  • 22
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography
    • Mesbah M, Premachandran U, Whitman WB. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 1989;39:159–167.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 23
    • 0023752959 scopus 로고
    • Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum
    • Kuykendall L, Roy M, O’Neill J, Devine T. Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 1988;38:358–361.
    • (1988) Int J Syst Bacteriol , vol.38 , pp. 358-361
    • Kuykendall, L.1    Roy, M.2    O’Neill, J.3    Devine, T.4
  • 24
    • 0019982011 scopus 로고
    • Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids
    • Miller LT. Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 1982;16:584–586.
    • (1982) J Clin Microbiol , vol.16 , pp. 584-586
    • Miller, L.T.1
  • 25
    • 0025324750 scopus 로고
    • A comparative study of the lipid composition of Halobacterium saccharovorum from various sources
    • Tindall B. A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 1990;13:128–130.
    • (1990) Syst Appl Microbiol , vol.13 , pp. 128-130
    • Tindall, B.1
  • 26
    • 0025098748 scopus 로고
    • Lipid composition of Halobacterium lacusprofundi
    • Tindall B. Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 1990;66:199–202.
    • (1990) FEMS Microbiol Lett , vol.66 , pp. 199-202
    • Tindall, B.1
  • 27
    • 65949111437 scopus 로고    scopus 로고
    • Phenotypic characterization and the principles of comparative systematics
    • Reddy TJCA, Beveridge JA, Breznak G, Marzluf TM and Schmidt SLR. (editors), Washington, DC: American Society for Microbiology
    • Tindall BJ, Sikorski J, Smibert RA, Krieg NR. Phenotypic characterization and the principles of comparative systematics. In: Reddy TJCA, Beveridge JA, Breznak G, Marzluf TM and Schmidt SLR. (editors). Methods for General and Molecular Microbiology. Washington, DC: American Society for Microbiology; 2007. pp. 330–393.
    • (2007) Methods for General and Molecular Microbiology , pp. 330-393
    • Tindall, B.J.1    Sikorski, J.2    Smibert, R.A.3    Krieg, N.R.4
  • 28
    • 84857911766 scopus 로고    scopus 로고
    • Anaerobic utilization of pectinous substrates at extremely haloalkaline conditions by Natranaerovirga pectinivora gen. Nov., sp. nov., and Natranaerovirga hydrolytica sp. nov., isolated from hypersaline soda lakes
    • Sorokin DY, Tourova TP, Panteleeva AN, Kaparullina EN, Muyzer G. Anaerobic utilization of pectinous substrates at extremely haloalkaline conditions by Natranaerovirga pectinivora gen. nov., sp. nov., and Natranaerovirga hydrolytica sp. nov., isolated from hypersaline soda lakes. Extremophiles 2012;16:307–315.
    • (2012) Extremophiles , vol.16 , pp. 307-315
    • Sorokin, D.Y.1    Tourova, T.P.2    Panteleeva, A.N.3    Kaparullina, E.N.4    Muyzer, G.5
  • 29
  • 30
    • 33845699975 scopus 로고    scopus 로고
    • Clostridium saccharogumia sp. Nov. and Lactonifactor longoviformis gen. nov., sp. nov., two novel human faecal bacteria involved in the conversion of the dietary phytoestrogen secoisolariciresinol diglucoside
    • Clavel T, Lippman R, Gavini F, Doré J, Blaut M. Clostridium saccharogumia sp. nov. and Lactonifactor longoviformis gen. nov., sp. nov., two novel human faecal bacteria involved in the conversion of the dietary phytoestrogen secoisolariciresinol diglucoside. Syst Appl Microbiol 2007;30:16–26.
    • (2007) Syst Appl Microbiol , vol.30 , pp. 16-26
    • Clavel, T.1    Lippman, R.2    Gavini, F.3    Doré, J.4    Blaut, M.5
  • 31
    • 77952718348 scopus 로고    scopus 로고
    • Anaerostipes butyraticus sp. Nov., an anaerobic, butyrate-producing bacterium from Clostridium cluster XIVa isolated from broiler chicken caecal content, and emended description of the genus Anaerostipes
    • Eeckhaut V, van Immerseel F, Pasmans F, de Brandt E, Haesebrouck F et al. Anaerostipes butyraticus sp. nov., an anaerobic, butyrate-producing bacterium from Clostridium cluster XIVa isolated from broiler chicken caecal content, and emended description of the genus Anaerostipes. Int J Syst Evol Microbiol 2010;60:1108–1112.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 1108-1112
    • Eeckhaut, V.1    Van Immerseel, F.2    Pasmans, F.3    De Brandt, E.4    Haesebrouck, F.5


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