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Volumn 11, Issue 3, 2016, Pages

FCGR2C polymorphisms associated with HIV-1 vaccine protection are linked to altered gene expression of Fc-γ receptors in human B cells

Author keywords

[No Author keywords available]

Indexed keywords

FC RECEPTOR; FCGR2A PROTEIN, HUMAN; FCGR2C PROTEIN, HUMAN; FCRLA PROTEIN, HUMAN; HUMAN IMMUNODEFICIENCY VIRUS VACCINE; IMMUNOGLOBULIN RECEPTOR;

EID: 85020318167     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0152425     Document Type: Article
Times cited : (12)

References (24)
  • 1
    • 73349094086 scopus 로고    scopus 로고
    • Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand
    • Epub 2009/10/22.: PMID: 19843557
    • Rerks-Ngarm S, Pitisuttithum P, Nitayaphan S, Kaewkungwal J, Chiu J, Paris R, et al. Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand. N Engl J Med. 2009; 361(23):2209–20. Epub 2009/10/22. doi: 10.1056/NEJMoa0908492 [pii]. PMID: 19843557.
    • (2009) N Engl J Med , vol.361 , Issue.23 , pp. 2209-2220
    • Rerks-Ngarm, S.1    Pitisuttithum, P.2    Nitayaphan, S.3    Kaewkungwal, J.4    Chiu, J.5    Paris, R.6
  • 2
    • 84907014639 scopus 로고    scopus 로고
    • FCGR2C polymorphisms associate with HIV-1 vaccine protection in RV144 trial
    • Epub 2014/08/12.: PMID: 25105367; PubMed Central PMCID: PMC4151214
    • Li SS, Gilbert PB, Tomaras GD, Kijak G, Ferrari G, Thomas R, et al. FCGR2C polymorphisms associate with HIV-1 vaccine protection in RV144 trial. J Clin Invest. 2014; 124(9):3879–90. Epub 2014/08/12. doi: 10.1172/JCI75539 [pii]. PMID: 25105367; PubMed Central PMCID: PMC4151214.
    • (2014) J Clin Invest , vol.124 , Issue.9 , pp. 3879-3890
    • Li, S.S.1    Gilbert, P.B.2    Tomaras, G.D.3    Kijak, G.4    Ferrari, G.5    Thomas, R.6
  • 3
    • 84903887355 scopus 로고    scopus 로고
    • Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial
    • Epub 2014/ 05/16.: PMID: 24829343; PubMed Central PMCID: PMC4135964
    • Gartland AJ, Li S, McNevin J, Tomaras GD, Gottardo R, Janes H, et al. Analysis of HLA A*02 association with vaccine efficacy in the RV144 HIV-1 vaccine trial. J Virol. 2014; 88(15):8242–55. Epub 2014/ 05/16. doi: 10.1128/JVI.01164-14 [pii]. PMID: 24829343; PubMed Central PMCID: PMC4135964.
    • (2014) J Virol , vol.88 , Issue.15 , pp. 8242-8255
    • Gartland, A.J.1    Li, S.2    McNevin, J.3    Tomaras, G.D.4    Gottardo, R.5    Janes, H.6
  • 4
    • 84867653590 scopus 로고    scopus 로고
    • Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2
    • Epub 2012/09/11.: PMID: 22960785; PubMed Central PMCID: PMC3551291
    • Rolland M, Edlefsen PT, Larsen BB, Tovanabutra S, Sanders-Buell E, Hertz T, et al. Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2. Nature. 2012; 490(7420):417–20. Epub 2012/09/11. doi: 10.1038/nature11519 [pii]. PMID: 22960785; PubMed Central PMCID: PMC3551291.
    • (2012) Nature , vol.490 , Issue.7420 , pp. 417-420
    • Rolland, M.1    Edlefsen, P.T.2    Larsen, B.B.3    Tovanabutra, S.4    Sanders-Buell, E.5    Hertz, T.6
  • 5
    • 84872809067 scopus 로고    scopus 로고
    • Vaccine induction of antibodies against a structurally heterogeneous site of immune pressure within HIV-1 envelope protein variable regions 1 and 2
    • Epub 2013/01/15.: pii. PMID: 23313589; PubMed Central PMCID: PMC3569735
    • Liao HX, Bonsignori M, Alam SM, McLellan JS, Tomaras GD, Moody MA, et al. Vaccine induction of antibodies against a structurally heterogeneous site of immune pressure within HIV-1 envelope protein variable regions 1 and 2. Immunity. 2013; 38(1):176–86. Epub 2013/01/15. doi: 10.1016/j.immuni. 2012.11.011 S1074-7613(12)00552-3 [pii]. PMID: 23313589; PubMed Central PMCID: PMC3569735.
    • (2013) Immunity , vol.38 , Issue.1 , pp. 176-186
    • Liao, H.X.1    Bonsignori, M.2    Alam, S.M.3    McLellan, J.S.4    Tomaras, G.D.5    Moody, M.A.6
  • 6
    • 84937131006 scopus 로고    scopus 로고
    • HLA class II genes modulate vaccine-induced antibody responses to affect HIV-1 acquisition
    • Epub 2015/07/17.: PMID: 26180102
    • Prentice HA, Tomaras GD, Geraghty DE, Apps R, Fong Y, Ehrenberg PK, et al. HLA class II genes modulate vaccine-induced antibody responses to affect HIV-1 acquisition. Sci Transl Med. 2015; 7 (296):296ra112. Epub 2015/07/17. doi: 10.1126/scitranslmed.aab4005 7/296/296ra112 [pii]. PMID: 26180102.
    • (2015) Sci Transl Med , vol.7 , Issue.296 , pp. 296ra112
    • Prentice, H.A.1    Tomaras, G.D.2    Geraghty, D.E.3    Apps, R.4    Fong, Y.5    Ehrenberg, P.K.6
  • 7
    • 84885645853 scopus 로고    scopus 로고
    • Transcriptome and genome sequencing uncovers functional variation in humans
    • Epub 2013/09/17.: PMID: 24037378; PubMed Central PMCID: PMC3918453
    • Lappalainen T, Sammeth M, Friedlander MR, t Hoen PA, Monlong J, Rivas MA, et al. Transcriptome and genome sequencing uncovers functional variation in humans. Nature. 2013; 501(7468):506–11. Epub 2013/09/17. doi: 10.1038/nature12531 [pii]. PMID: 24037378; PubMed Central PMCID: PMC3918453.
    • (2013) Nature , vol.501 , Issue.7468 , pp. 506-511
    • Lappalainen, T.1    Sammeth, M.2    Friedlander, M.R.3    t Hoen, P.A.4    Monlong, J.5    Rivas, M.A.6
  • 8
    • 77950458649 scopus 로고    scopus 로고
    • Transcriptome genetics using second generation sequencing in a Caucasian population
    • Epub 2010/03/12.: PMID: 20220756; PubMed Central PMCID: PMC3836232
    • Montgomery SB, Sammeth M, Gutierrez-Arcelus M, Lach RP, Ingle C, Nisbett J, et al. Transcriptome genetics using second generation sequencing in a Caucasian population. Nature. 2010; 464 (7289):773–7. Epub 2010/03/12. doi: 10.1038/nature08903 [pii]. PMID: 20220756; PubMed Central PMCID: PMC3836232.
    • (2010) Nature , vol.464 , Issue.7289 , pp. 773-777
    • Montgomery, S.B.1    Sammeth, M.2    Gutierrez-Arcelus, M.3    Lach, R.P.4    Ingle, C.5    Nisbett, J.6
  • 9
    • 77955505742 scopus 로고    scopus 로고
    • A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies
    • Epub 2010/05/14.: PMID: 20463871; PubMed Central PMCID: PMC2865505
    • Stegle O, Parts L, Durbin R, Winn J. A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies. PLoS Comput Biol. 2010; 6(5): e1000770. Epub 2010/05/14. doi: 10.1371/journal.pcbi.1000770 PMID: 20463871; PubMed Central PMCID: PMC2865505.
    • (2010) PLoS Comput Biol , vol.6 , Issue.5
    • Stegle, O.1    Parts, L.2    Durbin, R.3    Winn, J.4
  • 10
    • 84861153094 scopus 로고    scopus 로고
    • Matrix EQTL: Ultra fast eQTL analysis via large matrix operations
    • Epub 2012/04/12.: PMID: 22492648; PubMed Central PMCID: PMC3348564
    • Shabalin AA. Matrix eQTL: ultra fast eQTL analysis via large matrix operations. Bioinformatics. 2012; 28(10):1353–8. Epub 2012/04/12. doi: 10.1093/bioinformatics/bts163 [pii]. PMID: 22492648; PubMed Central PMCID: PMC3348564.
    • (2012) Bioinformatics , vol.28 , Issue.10 , pp. 1353-1358
    • Shabalin, A.A.1
  • 11
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq—a Python framework to work with high-throughput sequencing data
    • Epub 2014/09/28.: PMID: 25260700; PubMed Central PMCID: PMC4287950
    • Anders S, Pyl PT, Huber W. HTSeq—a Python framework to work with high-throughput sequencing data. Bioinformatics. 2015; 31(2):166–9. Epub 2014/09/28. doi: 10.1093/bioinformatics/btu638 [pii]. PMID: 25260700; PubMed Central PMCID: PMC4287950.
    • (2015) Bioinformatics , vol.31 , Issue.2 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 12
    • 34548292504 scopus 로고    scopus 로고
    • Plink: A tool set for whole-genome association and population-based linkage analyses
    • Epub 2007/08/19.: pii: PMID: 17701901; PubMed Central PMCID: PMC1950838
    • Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet. 2007; 81(3):559–75. Epub 2007/08/19. doi: S0002-9297(07)61352-4 [pii] doi: 10.1086/519795 PMID: 17701901; PubMed Central PMCID: PMC1950838.
    • (2007) Am J Hum Genet , vol.81 , Issue.3 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3    Thomas, L.4    Ferreira, M.A.5    Bender, D.6
  • 13
    • 79960405019 scopus 로고    scopus 로고
    • The variant call format and VCFtools
    • Epub 2011/06/10.: PMID: 21653522; PubMed Central PMCID: PMC3137218
    • Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, et al. The variant call format and VCFtools. Bioinformatics. 2011; 27(15):2156–8. Epub 2011/06/10. doi: 10.1093/bioinformatics/btr330 [pii]. PMID: 21653522; PubMed Central PMCID: PMC3137218.
    • (2011) Bioinformatics , vol.27 , Issue.15 , pp. 2156-2158
    • Danecek, P.1    Auton, A.2    Abecasis, G.3    Albers, C.A.4    Banks, E.5    DePristo, M.A.6
  • 14
    • 24044447664 scopus 로고    scopus 로고
    • Automated generation of heuristics for biological sequence comparison
    • Epub 2005/02/17.: pii: PMID: 15713233; PubMed Central PMCID: PMC553969
    • Slater GS, Birney E. Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics. 2005; 6:31. Epub 2005/02/17. doi: 1471-2105-6-31 [pii] doi: 10.1186/1471-2105-6-31 PMID: 15713233; PubMed Central PMCID: PMC553969.
    • (2005) BMC Bioinformatics , vol.6 , pp. 31
    • Slater, G.S.1    Birney, E.2
  • 15
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. JRoyStatistSocSer. 1995; B(57):289–300.
    • (1995) JRoyStatistSocSer , vol.B , Issue.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 16
    • 84881466154 scopus 로고    scopus 로고
    • HLA-F and MHC-I open conformers cooperate in a MHC-I antigen cross-presentation pathway
    • Epub 2013/07/16.: pii. PMID: 23851683; PubMed Central PMCID: PMC3732835
    • Goodridge JP, Lee N, Burian A, Pyo CW, Tykodi SS, Warren EH, et al. HLA-F and MHC-I open conformers cooperate in a MHC-I antigen cross-presentation pathway. J Immunol. 2013; 191(4):1567–77. Epub 2013/07/16. doi: 10.4049/jimmunol.1300080 [pii]. PMID: 23851683; PubMed Central PMCID: PMC3732835.
    • (2013) J Immunol , vol.191 , Issue.4 , pp. 1567-1577
    • Goodridge, J.P.1    Lee, N.2    Burian, A.3    Pyo, C.W.4    Tykodi, S.S.5    Warren, E.H.6
  • 17
    • 84860596557 scopus 로고    scopus 로고
    • Patterns of cis regulatory variation in diverse human populations
    • Epub 2012/04/26.: pii. PMID: 22532805; PubMed Central PMCID: PMC3330104
    • Stranger BE, Montgomery SB, Dimas AS, Parts L, Stegle O, Ingle CE, et al. Patterns of cis regulatory variation in diverse human populations. PLoS Genet. 2012; 8(4):e1002639. Epub 2012/04/26. doi: 10. 1371/journal.pgen.1002639 PGENETICS-D-11-00883 [pii]. PMID: 22532805; PubMed Central PMCID: PMC3330104.
    • (2012) PLoS Genet , vol.8 , Issue.4
    • Stranger, B.E.1    Montgomery, S.B.2    Dimas, A.S.3    Parts, L.4    Stegle, O.5    Ingle, C.E.6
  • 18
    • 84892641078 scopus 로고    scopus 로고
    • Allelic-dependent expression of an activating Fc receptor on B cells enhances humoral immune responses
    • Epub 2013/12/20.: PMID: 24353158; PubMed Central PMCID: PMC3982386
    • Li X, Wu J, Ptacek T, Redden DT, Brown EE, Alarcon GS, et al. Allelic-dependent expression of an activating Fc receptor on B cells enhances humoral immune responses. Sci Transl Med. 2013; 5 (216):216ra175. Epub 2013/12/20. doi: 10.1126/scitranslmed.3007097 5/216/216ra175 [pii]. PMID: 24353158; PubMed Central PMCID: PMC3982386.
    • (2013) Sci Transl Med , vol.5 , Issue.216 , pp. 216ra175
    • Li, X.1    Wu, J.2    Ptacek, T.3    Redden, D.T.4    Brown, E.E.5    Alarcon, G.S.6
  • 19
    • 84862119571 scopus 로고    scopus 로고
    • Evolutionary history of copy-number-variable locus for the low-affinity Fcgamma receptor: Mutation rate, autoimmune disease, and the legacy of helminth infection
    • Epub 2012/05/23.: pii. PMID: 22608500; PubMed Central PMCID: PMC3370267
    • Machado LR, Hardwick RJ, Bowdrey J, Bogle H, Knowles TJ, Sironi M, et al. Evolutionary history of copy-number-variable locus for the low-affinity Fcgamma receptor: mutation rate, autoimmune disease, and the legacy of helminth infection. Am J Hum Genet. 2012; 90(6):973–85. Epub 2012/05/23. doi: 10. 1016/j.ajhg.2012.04.018 S0002-9297(12)00251-0 [pii]. PMID: 22608500; PubMed Central PMCID: PMC3370267.
    • (2012) Am J Hum Genet , vol.90 , Issue.6 , pp. 973-985
    • Machado, L.R.1    Hardwick, R.J.2    Bowdrey, J.3    Bogle, H.4    Knowles, T.J.5    Sironi, M.6
  • 20
    • 66749185874 scopus 로고    scopus 로고
    • Copy number variation at the FCGR locus includes FCGR3A, FCGR2C and FCGR3B but not FCGR2A and FCGR2B
    • Epub 2009/03/25.: PMID: 19309690
    • Breunis WB, van Mirre E, Geissler J, Laddach N, Wolbink G, van der Schoot E, et al. Copy number variation at the FCGR locus includes FCGR3A, FCGR2C and FCGR3B but not FCGR2A and FCGR2B. Hum Mutat. 2009; 30(5):E640–50. Epub 2009/03/25. doi: 10.1002/humu.20997 PMID: 19309690.
    • (2009) Hum Mutat , vol.30 , Issue.5 , pp. E640-E650
    • Breunis, W.B.1    van Mirre, E.2    Geissler, J.3    Laddach, N.4    Wolbink, G.5    van der Schoot, E.6
  • 21
    • 84910133583 scopus 로고    scopus 로고
    • Human gene copy number variation and infectious disease
    • Epub 2014/08/12.: PMID: 25110110
    • Hollox EJ, Hoh BP. Human gene copy number variation and infectious disease. Hum Genet. 2014; 133 (10):1217–33. Epub 2014/08/12. doi: 10.1007/s00439-014-1457-x PMID: 25110110.
    • (2014) Hum Genet , vol.133 , Issue.10 , pp. 1217-1233
    • Hollox, E.J.1    Hoh, B.P.2
  • 22
    • 84862495640 scopus 로고    scopus 로고
    • Properties of mouse and human IgG receptors and their contribution to disease models
    • Epub 2012/04/27.: PMID: 22535666
    • Bruhns P. Properties of mouse and human IgG receptors and their contribution to disease models. Blood. 2012; 119(24):5640–9. Epub 2012/04/27. doi: 10.1182/blood-2012-01-380121 [pii]. PMID: 22535666.
    • (2012) Blood , vol.119 , Issue.24 , pp. 5640-5649
    • Bruhns, P.1
  • 23
    • 84929162992 scopus 로고    scopus 로고
    • The genetic architecture of the human immune system: A bioresource for autoimmunity and disease pathogenesis
    • Epub 2015/03/17.: pii. PMID: 25772697; PubMed Central PMCID: PMC4393780
    • Roederer M, Quaye L, Mangino M, Beddall MH, Mahnke Y, Chattopadhyay P, et al. The genetic architecture of the human immune system: a bioresource for autoimmunity and disease pathogenesis. Cell. 2015; 161(2):387–403. Epub 2015/03/17. doi: 10.1016/j.cell.2015.02.046 S0092-8674(15)00247-0 [pii]. PMID: 25772697; PubMed Central PMCID: PMC4393780.
    • (2015) Cell , vol.161 , Issue.2 , pp. 387-403
    • Roederer, M.1    Quaye, L.2    Mangino, M.3    Beddall, M.H.4    Mahnke, Y.5    Chattopadhyay, P.6
  • 24
    • 84908077691 scopus 로고    scopus 로고
    • Broadly neutralizing anti-HIV-1 antibodies require Fc effector functions for in vivo activity
    • Epub 2014/09/13.: pii. PMID: 25215485; PubMed Central PMCID: PMC4167398
    • Bournazos S, Klein F, Pietzsch J, Seaman MS, Nussenzweig MC, Ravetch JV. Broadly neutralizing anti-HIV-1 antibodies require Fc effector functions for in vivo activity. Cell. 2014; 158(6):1243–53. Epub 2014/09/13. doi: 10.1016/j.cell.2014.08.023 S0092-8674(14)01055-1 [pii]. PMID: 25215485; PubMed Central PMCID: PMC4167398.
    • (2014) Cell , vol.158 , Issue.6 , pp. 1243-1253
    • Bournazos, S.1    Klein, F.2    Pietzsch, J.3    Seaman, M.S.4    Nussenzweig, M.C.5    Ravetch, J.V.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.