메뉴 건너뛰기




Volumn 1, Issue 5, 2017, Pages

Community structure follows simple assembly rules in microbial microcosms

Author keywords

[No Author keywords available]

Indexed keywords


EID: 85020218190     PISSN: None     EISSN: 2397334X     Source Type: Journal    
DOI: 10.1038/s41559-017-0109     Document Type: Article
Times cited : (378)

References (33)
  • 1
    • 44449137093 scopus 로고    scopus 로고
    • The microbial engines that drive Earth's biogeochemical cycles
    • Falkowski, P., Fenchel, T. & Delong, E. The microbial engines that drive Earth's biogeochemical cycles. Science 320, 1034-1039 (2008).
    • (2008) Science , vol.320 , pp. 1034-1039
    • Falkowski, P.1    Fenchel, T.2    Delong, E.3
  • 4
    • 84925486076 scopus 로고    scopus 로고
    • The gut microbiota and inflammatory bowel disease
    • Matsuoka, K. & Kanai, T. The gut microbiota and inflammatory bowel disease. Semin. Immunopathol. 37, 47-55 (2015).
    • (2015) Semin. Immunopathol , vol.37 , pp. 47-55
    • Matsuoka, K.1    Kanai, T.2
  • 5
    • 84961904331 scopus 로고    scopus 로고
    • Challenges in microbial ecology: Building predictive understanding of community function and dynamics
    • Widder, S. et al. Challenges in microbial ecology: building predictive understanding of community function and dynamics. ISME J. 10, 2557-2568 (2016).
    • (2016) ISME J , vol.10 , pp. 2557-2568
    • Widder, S.1
  • 7
    • 84933556355 scopus 로고    scopus 로고
    • Ecological communities by design
    • Fredrickson, J. K. Ecological communities by design. Science 348, 1425-1427 (2015).
    • (2015) Science , vol.348 , pp. 1425-1427
    • Fredrickson, J.K.1
  • 8
    • 84863920287 scopus 로고    scopus 로고
    • Microbial interactions: From networks to models
    • Faust, K. & Raes, J. Microbial interactions: from networks to models. Nat. Rev. Microbiol. 10, 538-550 (2012).
    • (2012) Nat. Rev. Microbiol , vol.10 , pp. 538-550
    • Faust, K.1    Raes, J.2
  • 9
    • 84910627912 scopus 로고    scopus 로고
    • Towards predictive models of the human gut microbiome
    • Bucci, V. & Xavier, J. B. Towards predictive models of the human gut microbiome. J. Mol. Biol. 426, 3907-3916 (2014).
    • (2014) J. Mol. Biol , vol.426 , pp. 3907-3916
    • Bucci, V.1    Xavier, J.B.2
  • 10
    • 84905030166 scopus 로고    scopus 로고
    • Deciphering microbial interactions and detecting keystone species with co-occurrence networks
    • Berry, D. & Widder, S. Deciphering microbial interactions and detecting keystone species with co-occurrence networks. Front. Microbiol. 5, 219 (2014).
    • (2014) Front. Microbiol , vol.5 , pp. 219
    • Berry, D.1    Widder, S.2
  • 11
    • 84939467437 scopus 로고    scopus 로고
    • Inferring species interactions in ecological communities: A comparison of methods at different levels of complexity
    • Carrara, F., Giometto, A., Seymour, M., Rinaldo, A. & Altermatt, F. Inferring species interactions in ecological communities: a comparison of methods at different levels of complexity. Methods Ecol. Evol. 6, 895-906 (2015).
    • (2015) Methods Ecol. Evol , vol.6 , pp. 895-906
    • Carrara, F.1    Giometto, A.2    Seymour, M.3    Rinaldo, A.4    Altermatt, F.5
  • 12
    • 0028162254 scopus 로고
    • Higher order interactions in ecological communities: What are they and how can they be detected?
    • Billick, I. & Case, T. J. Higher order interactions in ecological communities: What are they and how can they be detected? Ecology 75, 1530-1543 (1994).
    • (1994) Ecology , vol.75 , pp. 1530-1543
    • Billick, I.1    Case, T.J.2
  • 14
    • 0028165937 scopus 로고
    • The nature and consequences of indirect effects in ecological communities
    • Wootton, J. T. The nature and consequences of indirect effects in ecological communities. Annu. Rev. Ecol. Syst. 25, 443-466 (1994).
    • (1994) Annu. Rev. Ecol. Syst , vol.25 , pp. 443-466
    • Wootton, J.T.1
  • 15
    • 84930678786 scopus 로고    scopus 로고
    • Counteraction of antibiotic production and degradation stabilizes microbial communities
    • Kelsic, E. D., Zhao, J., Vetsigian, K. & Kishony, R. Counteraction of antibiotic production and degradation stabilizes microbial communities. Nature 521, 516-519 (2015).
    • (2015) Nature , vol.521 , pp. 516-519
    • Kelsic, E.D.1    Zhao, J.2    Vetsigian, K.3    Kishony, R.4
  • 16
    • 84892708007 scopus 로고    scopus 로고
    • Ecological modeling from time-series inference: Insight into dynamics and stability of intestinal microbiota
    • Stein, R. R. et al. Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota. PLoS Comput. Biol. 9, e1003388 (2013).
    • (2013) PLoS Comput. Biol , vol.9 , pp. e1003388
    • Stein, R.R.1
  • 17
    • 84975223360 scopus 로고    scopus 로고
    • MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses
    • Bucci, V. et al. MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses. Genome Biol. 17, 121 (2016).
    • (2016) Genome Biol , vol.17 , pp. 121
    • Bucci, V.1
  • 18
    • 0000151238 scopus 로고
    • The competitive structure of communities: An experimental approach with protozoa
    • Vandermeer, J. H. The competitive structure of communities: an experimental approach with protozoa. Ecology 50, 362-371 (1969).
    • (1969) Ecology , vol.50 , pp. 362-371
    • Vandermeer, J.H.1
  • 19
    • 24044483917 scopus 로고    scopus 로고
    • Experimental evidence rejects pairwise modelling approach to coexistence in plant communities
    • Dormann, C. F. & Roxburgh, S. H. Experimental evidence rejects pairwise modelling approach to coexistence in plant communities. Proc. R. Soc. B 272, 1279-1285 (2005).
    • (2005) Proc. R. Soc. B , vol.272 , pp. 1279-1285
    • Dormann, C.F.1    Roxburgh, S.H.2
  • 20
    • 37849021587 scopus 로고    scopus 로고
    • Microbial interactions within a cheese microbial community
    • Mounier, J. et al. Microbial interactions within a cheese microbial community. Appl. Environ. Microbiol. 74, 172-181 (2008).
    • (2008) Appl. Environ. Microbiol , vol.74 , pp. 172-181
    • Mounier, J.1
  • 21
    • 84904687373 scopus 로고    scopus 로고
    • Identifying keystone species in the human gut microbiome from metagenomic timeseries using sparse linear regression
    • Fisher, C. K. & Mehta, P. Identifying keystone species in the human gut microbiome from metagenomic timeseries using sparse linear regression. PLoS ONE 9, e102451 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e102451
    • Fisher, C.K.1    Mehta, P.2
  • 23
    • 0001594175 scopus 로고
    • Testing for higher order interactions
    • Case, T. J. & Bender, E. A. Testing for higher order interactions. Am. Nat. 118, 920-929 (1981).
    • (1981) Am. Nat , vol.118 , pp. 920-929
    • Case, T.J.1    Bender, E.A.2
  • 24
    • 0027796995 scopus 로고
    • Hopf bifurcations in competitive three-dimensional Lotka-Volterra systems
    • Zeeman, M. L. Hopf bifurcations in competitive three-dimensional Lotka-Volterra systems. Dyn. Stab. Syst. 8, 189-216 (1993).
    • (1993) Dyn. Stab. Syst , vol.8 , pp. 189-216
    • Zeeman, M.L.1
  • 25
    • 84907342218 scopus 로고    scopus 로고
    • Clustering in community structure across replicate ecosystems following a long-term bacterial evolution experiment
    • Celiker, H. & Gore, J. Clustering in community structure across replicate ecosystems following a long-term bacterial evolution experiment. Nat. Commun. 5, 4643 (2014).
    • (2014) Nat. Commun , vol.5 , pp. 4643
    • Celiker, H.1    Gore, J.2
  • 26
    • 84938520532 scopus 로고    scopus 로고
    • Malthusian parameters as estimators of the fitness of microbes: A cautionary tale about the low side of high throughput
    • Concepción-Acevedo, J., Weiss, H. N., Chaudhry, W. N. & Levin, B. R. Malthusian parameters as estimators of the fitness of microbes: a cautionary tale about the low side of high throughput. PLoS ONE 10, e0126915 (2015).
    • (2015) PLoS ONE , vol.10 , pp. e0126915
    • Concepción-Acevedo, J.1    Weiss, H.N.2    Chaudhry, W.N.3    Levin, B.R.4
  • 27
    • 84931573729 scopus 로고    scopus 로고
    • Historical contingency in community assembly: Integrating niches, species pools, and priority effects
    • Fukami, T. Historical contingency in community assembly: integrating niches, species pools, and priority effects. Annu. Rev. Ecol. Evol. Syst. 46, 1-23 (2015).
    • (2015) Annu. Rev. Ecol. Evol. Syst , vol.46 , pp. 1-23
    • Fukami, T.1
  • 28
    • 84964285149 scopus 로고    scopus 로고
    • Inhibitory interactions promote frequent bistability among competing bacteria
    • Wright, E. S. & Vetsigian, K. H. Inhibitory interactions promote frequent bistability among competing bacteria. Nat. Commun. 7, 11274 (2016).
    • (2016) Nat. Commun , vol.7 , pp. 11274
    • Wright, E.S.1    Vetsigian, K.H.2
  • 29
    • 0001188059 scopus 로고
    • Competitive exclusion
    • Armstrong, R. A. & McGehee, R. Competitive exclusion. Am. Nat. 115, 151-170 (1980).
    • (1980) Am. Nat , vol.115 , pp. 151-170
    • Armstrong, R.A.1    McGehee, R.2
  • 30
    • 0033604549 scopus 로고    scopus 로고
    • Biodiversity of plankton by species oscillations and chaos
    • Huisman, J. & Weissing, F. Biodiversity of plankton by species oscillations and chaos. Nature 402, 407-410 (1999).
    • (1999) Nature , vol.402 , pp. 407-410
    • Huisman, J.1    Weissing, F.2
  • 31
    • 84973161365 scopus 로고    scopus 로고
    • Oscillatory dynamics in a bacterial cross-protection mutualism
    • Yurtsev, E. A., Conwill, A. & Gore, J. Oscillatory dynamics in a bacterial cross-protection mutualism. Proc. Natl Acad. Sci. USA 113, 6236-6241 (2016).
    • (2016) Proc. Natl Acad. Sci. USA , vol.113 , pp. 6236-6241
    • Yurtsev, E.A.1    Conwill, A.2    Gore, J.3
  • 32
    • 0037062936 scopus 로고    scopus 로고
    • Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors
    • Kerr, B., Riley, M. A., Feldman, M. W. & Bohannan, B. J. Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors. Nature 418, 171-174 (2002).
    • (2002) Nature , vol.418 , pp. 171-174
    • Kerr, B.1    Riley, M.A.2    Feldman, M.W.3    Bohannan, B.J.4
  • 33
    • 79954995189 scopus 로고    scopus 로고
    • A competitive network theory of species diversity
    • Allesina, S. & Levine, J. A competitive network theory of species diversity. Proc. Natl Acad. Sci. USA 108, 5638-5642 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 5638-5642
    • Allesina, S.1    Levine, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.