-
3
-
-
0028175156
-
Conditional outcomes in mutualistic interactions
-
Bronstein JL (1994) Conditional outcomes in mutualistic interactions. Trends Ecol Evol 9(6):214-217.
-
(1994)
Trends Ecol Evol
, vol.9
, Issue.6
, pp. 214-217
-
-
Bronstein, J.L.1
-
4
-
-
0028595244
-
Our current understanding of mutualism
-
Bronstein JL (1994) Our current understanding of mutualism. Q Rev Biol 69(1):31-51.
-
(1994)
Q Rev Biol
, vol.69
, Issue.1
, pp. 31-51
-
-
Bronstein, J.L.1
-
5
-
-
0035033298
-
Mutualism, facilitation, and the structure of ecological communities
-
Stachowicz JJ (2001) Mutualism, facilitation, and the structure of ecological communities. Bioscience 51(3):235-246.
-
(2001)
Bioscience
, vol.51
, Issue.3
, pp. 235-246
-
-
Stachowicz, J.J.1
-
6
-
-
77951782961
-
A consumer-resource approach to the densitydependent population dynamics of mutualism
-
Holland JN, DeAngelis DL (2010) A consumer-resource approach to the densitydependent population dynamics of mutualism. Ecology 91(5):1286-1295.
-
(2010)
Ecology
, vol.91
, Issue.5
, pp. 1286-1295
-
-
Holland, J.N.1
DeAngelis, D.L.2
-
7
-
-
24944452249
-
A mechanistic model of a mutualism and its ecological and evolutionary dynamics
-
McGill B (2005) A mechanistic model of a mutualism and its ecological and evolutionary dynamics. Ecol Modell 187(4):413-425.
-
(2005)
Ecol Modell
, vol.187
, Issue.4
, pp. 413-425
-
-
McGill, B.1
-
8
-
-
0034994068
-
The exploitation of mutualisms
-
Bronstein JL (2001) The exploitation of mutualisms. Ecol Lett 4(3):277-287.
-
(2001)
Ecol Lett
, vol.4
, Issue.3
, pp. 277-287
-
-
Bronstein, J.L.1
-
9
-
-
33748510352
-
Pathways to mutualism breakdown
-
Sachs JL, Simms EL (2006) Pathways to mutualism breakdown. Trends Ecol Evol 21(10): 585-592.
-
(2006)
Trends Ecol Evol
, vol.21
, Issue.10
, pp. 585-592
-
-
Sachs, J.L.1
Simms, E.L.2
-
10
-
-
84899480571
-
Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria
-
Pande S, et al. (2014) Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria. ISME J 8(5):953-962.
-
(2014)
ISME J
, vol.8
, Issue.5
, pp. 953-962
-
-
Pande, S.1
-
11
-
-
84901049717
-
Syntrophic exchange in synthetic microbial communities
-
Mee MT, Collins JJ, Church GM, Wang HH (2014) Syntrophic exchange in synthetic microbial communities. Proc Natl Acad Sci USA 111(20):E2149-E2156.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.20
, pp. E2149-E2156
-
-
Mee, M.T.1
Collins, J.J.2
Church, G.M.3
Wang, H.H.4
-
12
-
-
33846936445
-
Synthetic cooperation in engineered yeast populations
-
Shou W, Ram S, Vilar JMG (2007) Synthetic cooperation in engineered yeast populations. Proc Natl Acad Sci USA 104(6):1877-1882.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.6
, pp. 1877-1882
-
-
Shou, W.1
Ram, S.2
Vilar, J.M.G.3
-
13
-
-
79951938948
-
Cooperative adaptation to establishment of a synthetic bacterial mutualism
-
Hosoda K, et al. (2011) Cooperative adaptation to establishment of a synthetic bacterial mutualism. PLoS One 6(2):e17105.
-
(2011)
PLoS One
, vol.6
, Issue.2
, pp. e17105
-
-
Hosoda, K.1
-
14
-
-
78649851616
-
Dynamics in the mixed microbial concourse
-
Wintermute EH, Silver PA (2010) Dynamics in the mixed microbial concourse. Genes Dev 24(23):2603-2614.
-
(2010)
Genes Dev
, vol.24
, Issue.23
, pp. 2603-2614
-
-
Wintermute, E.H.1
Silver, P.A.2
-
16
-
-
84923353801
-
Collective antibiotic tolerance: Mechanisms, dynamics and intervention
-
Meredith HR, Srimani JK, Lee AJ, Lopatkin AJ, You L (2015) Collective antibiotic tolerance: Mechanisms, dynamics and intervention. Nat Chem Biol 11(3):182-188.
-
(2015)
Nat Chem Biol
, vol.11
, Issue.3
, pp. 182-188
-
-
Meredith, H.R.1
Srimani, J.K.2
Lee, A.J.3
Lopatkin, A.J.4
You, L.5
-
17
-
-
84907736803
-
Collective antibiotic resistance: Mechanisms and implications
-
Vega NM, Gore J (2014) Collective antibiotic resistance: Mechanisms and implications. Curr Opin Microbiol 21:28-34.
-
(2014)
Curr Opin Microbiol
, vol.21
, pp. 28-34
-
-
Vega, N.M.1
Gore, J.2
-
18
-
-
77956328000
-
Bacterial charity work leads to population-wide resistance
-
Lee HH, Molla MN, Cantor CR, Collins JJ (2010) Bacterial charity work leads to population-wide resistance. Nature 467(7311):82-85.
-
(2010)
Nature
, vol.467
, Issue.7311
, pp. 82-85
-
-
Lee, H.H.1
Molla, M.N.2
Cantor, C.R.3
Collins, J.J.4
-
19
-
-
84882274148
-
Bacterial cheating drives the population dynamics of cooperative antibiotic resistance plasmids
-
Yurtsev EA, Chao HX, Datta MS, Artemova T, Gore J (2013) Bacterial cheating drives the population dynamics of cooperative antibiotic resistance plasmids. Mol Syst Biol 9:683.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 683
-
-
Yurtsev, E.A.1
Chao, H.X.2
Datta, M.S.3
Artemova, T.4
Gore, J.5
-
20
-
-
84907759551
-
Games of life and death: Antibiotic resistance and production through the lens of evolutionary game theory
-
Conlin PL, Chandler JR, Kerr B (2014) Games of life and death: Antibiotic resistance and production through the lens of evolutionary game theory. Curr Opin Microbiol 21:35-44.
-
(2014)
Curr Opin Microbiol
, vol.21
, pp. 35-44
-
-
Conlin, P.L.1
Chandler, J.R.2
Kerr, B.3
-
21
-
-
0024668922
-
Inoculum effect
-
Brook I (1989) Inoculum effect. Rev Infect Dis 11(3):361-368.
-
(1989)
Rev Infect Dis
, vol.11
, Issue.3
, pp. 361-368
-
-
Brook, I.1
-
22
-
-
22144476125
-
Bacterial resistance to antibiotics: Enzymatic degradation and modification
-
Wright GD (2005) Bacterial resistance to antibiotics: Enzymatic degradation and modification. Adv Drug Deliv Rev 57(10):1451-1470.
-
(2005)
Adv Drug Deliv Rev
, vol.57
, Issue.10
, pp. 1451-1470
-
-
Wright, G.D.1
-
23
-
-
70449719336
-
Protection of salmonella by ampicillin-resistant Escherichia coli in the presence of otherwise lethal drug concentrations
-
Perlin MH, et al. (2009) Protection of salmonella by ampicillin-resistant Escherichia coli in the presence of otherwise lethal drug concentrations. Proc R Soc Lond B Biol Sci 276(1674):3759-3768.
-
(2009)
Proc R Soc Lond B Biol Sci
, vol.276
, Issue.1674
, pp. 3759-3768
-
-
Perlin, M.H.1
-
24
-
-
69149098296
-
Evolution of altruists and cheaters in near-isogenic populations of Escherichia coli
-
Clark DR, et al. (2009) Evolution of altruists and cheaters in near-isogenic populations of Escherichia coli. Front Biosci (Landmark Ed) 14:4815-4824.
-
(2009)
Front Biosci (Landmark Ed
, vol.14
, pp. 4815-4824
-
-
Clark, D.R.1
-
25
-
-
0023044240
-
Coexistence of two competitors on one resource and one inhibitor: A chemostat model based on bacteria and antibiotics
-
Lenski RE, Hattingh SE (1986) Coexistence of two competitors on one resource and one inhibitor: A chemostat model based on bacteria and antibiotics. J Theor Biol 122(1):83-93.
-
(1986)
J Theor Biol
, vol.122
, Issue.1
, pp. 83-93
-
-
Lenski, R.E.1
Hattingh, S.E.2
-
26
-
-
84930678786
-
Counteraction of antibiotic production and degradation stabilizes microbial communities
-
Kelsic ED, Zhao J, Vetsigian K, Kishony R (2015) Counteraction of antibiotic production and degradation stabilizes microbial communities. Nature 521(7553): 516-519.
-
(2015)
Nature
, vol.521
, Issue.7553
, pp. 516-519
-
-
Kelsic, E.D.1
Zhao, J.2
Vetsigian, K.3
Kishony, R.4
-
27
-
-
84945315105
-
Live to cheat another day: Bacterial dormancy facilitates the social exploitation of β-lactamases
-
Medaney F, Dimitriu T, Ellis RJ, Raymond B (2016) Live to cheat another day: Bacterial dormancy facilitates the social exploitation of β-lactamases. ISME J 10(3):778-787.
-
(2016)
ISME J
, vol.10
, Issue.3
, pp. 778-787
-
-
Medaney, F.1
Dimitriu, T.2
Ellis, R.J.3
Raymond, B.4
-
28
-
-
84960173009
-
Indirect resistance to several classes of antibiotics in cocultures with resistant bacteria expressing antibiotic-modifying or-degrading enzymes
-
Nicoloff H, Andersson DI (2016) Indirect resistance to several classes of antibiotics in cocultures with resistant bacteria expressing antibiotic-modifying or-degrading enzymes. J Antimicrob Chemother 71(1):100-110.
-
(2016)
J Antimicrob Chemother
, vol.71
, Issue.1
, pp. 100-110
-
-
Nicoloff, H.1
Andersson, D.I.2
-
29
-
-
0021484937
-
The role of beta-lactamase-producing bacteria in the persistence of streptococcal tonsillar infection
-
Brook I (1984) The role of beta-lactamase-producing bacteria in the persistence of streptococcal tonsillar infection. Rev Infect Dis 6(5):601-607.
-
(1984)
Rev Infect Dis
, vol.6
, Issue.5
, pp. 601-607
-
-
Brook, I.1
-
30
-
-
0016762967
-
In vivo protection of Fusobacterium necrophorum from penicillin by Bacteroides fragilis
-
Hackman AS, Wilkins TD (1975) In vivo protection of Fusobacterium necrophorum from penicillin by Bacteroides fragilis. Antimicrob Agents Chemother 7(5):698-703.
-
(1975)
Antimicrob Agents Chemother
, vol.7
, Issue.5
, pp. 698-703
-
-
Hackman, A.S.1
Wilkins, T.D.2
-
31
-
-
0017208308
-
The beta-lactamases of gram-negative bacteria and their role in resistance to beta-lactam antibiotics
-
Sykes RB, Matthew M (1976) The beta-lactamases of gram-negative bacteria and their role in resistance to beta-lactam antibiotics. J Antimicrob Chemother 2(2): 115-157.
-
(1976)
J Antimicrob Chemother
, vol.2
, Issue.2
, pp. 115-157
-
-
Sykes, R.B.1
Matthew, M.2
-
32
-
-
84870835870
-
Programming stress-induced altruistic death in engineered bacteria
-
Tanouchi Y, Pai A, Buchler NE, You L (2012) Programming stress-induced altruistic death in engineered bacteria. Mol Syst Biol 8(1):626.
-
(2012)
Mol Syst Biol
, vol.8
, Issue.1
, pp. 626
-
-
Tanouchi, Y.1
Pai, A.2
Buchler, N.E.3
You, L.4
-
33
-
-
0020648839
-
Chloramphenicol acetyltransferase: Enzymology and molecular biology
-
Shaw WV (1983) Chloramphenicol acetyltransferase: Enzymology and molecular biology. CRC Crit Rev Biochem 14(1):1-46.
-
(1983)
CRC Crit Rev Biochem
, vol.14
, Issue.1
, pp. 1-46
-
-
Shaw, W.V.1
-
34
-
-
84888791540
-
The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria
-
Deris JB, et al. (2013) The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria. Science 342(6162):1237435.
-
(2013)
Science
, vol.342
, Issue.6162
, pp. 1237435
-
-
Deris, J.B.1
-
36
-
-
77956280046
-
An environment-sensitive synthetic microbial ecosystem
-
Hu B, Du J, Zou RY, Yuan YJ (2010) An environment-sensitive synthetic microbial ecosystem. PLoS One 5(5):e10619.
-
(2010)
PLoS One
, vol.5
, Issue.5
, pp. e10619
-
-
Hu, B.1
Du, J.2
Zou, R.Y.3
Yuan, Y.J.4
-
37
-
-
0016394337
-
Biological populations with nonoverlapping generations: Stable points, stable cycles, and chaos
-
May RM (1974) Biological populations with nonoverlapping generations: Stable points, stable cycles, and chaos. Science 186(4164):645-647.
-
(1974)
Science
, vol.186
, Issue.4164
, pp. 645-647
-
-
May, R.M.1
-
38
-
-
0017185443
-
Simple mathematical models with very complicated dynamics
-
May RM (1976) Simple mathematical models with very complicated dynamics. Nature 261(5560):459-467.
-
(1976)
Nature
, vol.261
, Issue.5560
, pp. 459-467
-
-
May, R.M.1
-
39
-
-
0032849169
-
Why do populations cycle? a synthesis of statistical and mechanistic modeling approaches
-
Kendall BE, et al. (1999) Why do populations cycle? a synthesis of statistical and mechanistic modeling approaches. Ecology 80(6):1789-1805.
-
(1999)
Ecology
, vol.80
, Issue.6
, pp. 1789-1805
-
-
Kendall, B.E.1
-
41
-
-
0026447445
-
Complex dynamics in ecological time series
-
Turchin P, Taylor AD (1992) Complex dynamics in ecological time series. Ecology 73(1): 289-305.
-
(1992)
Ecology
, vol.73
, Issue.1
, pp. 289-305
-
-
Turchin, P.1
Taylor, A.D.2
-
43
-
-
34047120681
-
Seasonal dynamics of recurrent epidemics
-
Stone L, Olinky R, Huppert A (2007) Seasonal dynamics of recurrent epidemics. Nature 446(7135):533-536.
-
(2007)
Nature
, vol.446
, Issue.7135
, pp. 533-536
-
-
Stone, L.1
Olinky, R.2
Huppert, A.3
-
44
-
-
0030620649
-
Chaotic dynamics in an insect population
-
Costantino RF, Desharnais RA, Cushing JM, Dennis B (1997) Chaotic dynamics in an insect population. Science 275(5298):389-391.
-
(1997)
Science
, vol.275
, Issue.5298
, pp. 389-391
-
-
Costantino, R.F.1
Desharnais, R.A.2
Cushing, J.M.3
Dennis, B.4
-
45
-
-
0034680809
-
Crossing the hopf bifurcation in a live predator-prey system
-
Fussmann GF, Ellner SP, Shertzer KW, Hairston NG, Jr (2000) Crossing the hopf bifurcation in a live predator-prey system. Science 290(5495):1358-1360.
-
(2000)
Science
, vol.290
, Issue.5495
, pp. 1358-1360
-
-
Fussmann, G.F.1
Ellner, S.P.2
Shertzer, K.W.3
Hairston, N.G.4
-
46
-
-
33847324896
-
Bifurcation and global periodic solutions in a delayed facultative mutualism system
-
Yan XP, Li WT (2007) Bifurcation and global periodic solutions in a delayed facultative mutualism system. Physica D 227(1):51-69.
-
(2007)
Physica D
, vol.227
, Issue.1
, pp. 51-69
-
-
Yan, X.P.1
Li, W.T.2
-
47
-
-
0035389498
-
Positive periodic solutions for an integrodifferential model of mutualism
-
Li Y, Xu G (2001) Positive periodic solutions for an integrodifferential model of mutualism. Appl Math Lett 14(5):525-530.
-
(2001)
Appl Math Lett
, vol.14
, Issue.5
, pp. 525-530
-
-
Li, Y.1
Xu, G.2
-
48
-
-
0343912006
-
Counterintuitive oscillations in systems of competition and mutualism
-
Gilpin ME, Case TJ, Bender EA (1982) Counterintuitive oscillations in systems of competition and mutualism. Am Nat 119(4):584-588.
-
(1982)
Am Nat
, vol.119
, Issue.4
, pp. 584-588
-
-
Gilpin, M.E.1
Case, T.J.2
Bender, E.A.3
-
49
-
-
0014271235
-
A microbial interaction involving combined mutualism and inhibition
-
Yeoh HT, Bungay HR, Krieg NR (1968) A microbial interaction involving combined mutualism and inhibition. Can J Microbiol 14(4):491-492.
-
(1968)
Can J Microbiol
, vol.14
, Issue.4
, pp. 491-492
-
-
Yeoh, H.T.1
Bungay, H.R.2
Krieg, N.R.3
-
50
-
-
84938503781
-
Metabolic co-dependence gives rise to collective oscillations within biofilms
-
Liu J, et al. (2015) Metabolic co-dependence gives rise to collective oscillations within biofilms. Nature 523(7562):550-554.
-
(2015)
Nature
, vol.523
, Issue.7562
, pp. 550-554
-
-
Liu, J.1
-
51
-
-
84865531061
-
The shared antibiotic resistome of soil bacteria and human pathogens
-
Forsberg KJ, et al. (2012) The shared antibiotic resistome of soil bacteria and human pathogens. Science 337(6098):1107-1111.
-
(2012)
Science
, vol.337
, Issue.6098
, pp. 1107-1111
-
-
Forsberg, K.J.1
-
52
-
-
35748929920
-
Expanding the soil antibiotic resistome: Exploring environmental diversity
-
D'Costa VM, Griffiths E, Wright GD (2007) Expanding the soil antibiotic resistome: Exploring environmental diversity. Curr Opin Microbiol 10(5):481-489.
-
(2007)
Curr Opin Microbiol
, vol.10
, Issue.5
, pp. 481-489
-
-
D'Costa, V.M.1
Griffiths, E.2
Wright, G.D.3
-
53
-
-
31144458334
-
Sampling the antibiotic resistome
-
D'Costa VM, McGrann KM, Hughes DW, Wright GD (2006) Sampling the antibiotic resistome. Science 311(5759):374-377.
-
(2006)
Science
, vol.311
, Issue.5759
, pp. 374-377
-
-
D'Costa, V.M.1
McGrann, K.M.2
Hughes, D.W.3
Wright, G.D.4
-
54
-
-
23444440823
-
Inactivation of antibiotics and the dissemination of resistance genes
-
Davies J (1994) Inactivation of antibiotics and the dissemination of resistance genes. Science 264(5157):375-382.
-
(1994)
Science
, vol.264
, Issue.5157
, pp. 375-382
-
-
Davies, J.1
-
55
-
-
4644278378
-
Beta-lactamase-producing bacteria in mixed infections
-
Brook I (2004) Beta-lactamase-producing bacteria in mixed infections. Clin Microbiol Infect 10(9):777-784.
-
(2004)
Clin Microbiol Infect
, vol.10
, Issue.9
, pp. 777-784
-
-
Brook, I.1
-
56
-
-
17044438226
-
Group-beneficial traits, frequencydependent selection and genotypic diversity: An antibiotic resistance paradigm
-
Dugatkin LA, Perlin M, Lucas JS, Atlas R (2005) Group-beneficial traits, frequencydependent selection and genotypic diversity: An antibiotic resistance paradigm. Proc Biol Sci 272(1558):79-83.
-
(2005)
Proc Biol Sci
, vol.272
, Issue.1558
, pp. 79-83
-
-
Dugatkin, L.A.1
Perlin, M.2
Lucas, J.S.3
Atlas, R.4
-
57
-
-
0019128817
-
Plasmids
-
106, 110 passim
-
Novick RP (1980) Plasmids. Sci Am 243(6):102-104, 106, 110 passim.
-
(1980)
Sci Am
, vol.243
, Issue.6
, pp. 102-104
-
-
Novick, R.P.1
-
58
-
-
77957980707
-
Origins and evolution of antibiotic resistance
-
Davies J, Davies D (2010) Origins and evolution of antibiotic resistance. Microbiol Mol Biol Rev 74(3):417-433.
-
(2010)
Microbiol Mol Biol Rev
, vol.74
, Issue.3
, pp. 417-433
-
-
Davies, J.1
Davies, D.2
-
59
-
-
80053175916
-
BglBrick vectors and datasheets: A synthetic biology platform for gene expression
-
Lee TS, et al. (2011) BglBrick vectors and datasheets: A synthetic biology platform for gene expression. J Biol Eng 5(1):12.
-
(2011)
J Biol Eng
, vol.5
, Issue.1
, pp. 12
-
-
Lee, T.S.1
-
60
-
-
45149118469
-
Engineering BioBrick vectors from BioBrick parts
-
Shetty RP, Endy D, Knight TF, Jr (2008) Engineering BioBrick vectors from BioBrick parts. J Biol Eng 2(1):5.
-
(2008)
J Biol Eng
, vol.2
, Issue.1
, pp. 5
-
-
Shetty, R.P.1
Endy, D.2
Knight, T.F.3
|