메뉴 건너뛰기




Volumn 10, Issue 6, 2015, Pages

Malthusian parameters as estimators of the fitness of microbes: A cautionary tale about the low side of high throughput

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIUM CULTURE; CALIBRATION; CONTROLLED STUDY; ESCHERICHIA COLI; FITNESS; GROWTH RATE; MALTHUSIAN PARAMETER; MICROBIOLOGICAL PARAMETERS; MICROTITER PLATE ASSAY; NONHUMAN; OPTICAL DENSITY; PSEUDOMONAS AERUGINOSA; RELIABILITY; REPRODUCIBILITY; STAPHYLOCOCCUS AUREUS; BACTERIAL PHENOMENA AND FUNCTIONS; BACTERIUM; BACTERIUM CONJUGATION; DRUG EFFECTS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MUTATION;

EID: 84938520532     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0126915     Document Type: Article
Times cited : (27)

References (28)
  • 1
    • 0022500302 scopus 로고
    • Fitness as a function of beta-galactosidase activity in Escherichia coli
    • PMID: 3096817
    • Dean AM, Dykhuizen DE, Hartl DL. Fitness as a function of beta-galactosidase activity in Escherichia coli. Genetical Research. 1986: 48: 1-8. PMID: 3096817
    • (1986) Genetical Research , vol.48 , pp. 1-8
    • Dean, A.M.1    Dykhuizen, D.E.2    Hartl, D.L.3
  • 2
    • 0028365256 scopus 로고
    • Dynamics of adaptation and diversification: A 10,000-generation experiment with bacterial populations
    • PMID: 8041701
    • Lenski RE, Travisano M. Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations. Proc Natl Acad Sci U S A. 1994: 91: 6808-6814. PMID: 8041701
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 6808-6814
    • Lenski, R.E.1    Travisano, M.2
  • 3
    • 85046112653 scopus 로고    scopus 로고
    • Reducing antibiotic resistance
    • Schrag S, Perrot V. Reducing antibiotic resistance. Nature. 1996: 28: 120-121.
    • (1996) Nature , vol.28 , pp. 120-121
    • Schrag, S.1    Perrot, V.2
  • 4
    • 0033830225 scopus 로고    scopus 로고
    • The cost of antibiotic resistance from a bacterial perspective
    • PMID: 11498391
    • Bjorkman J, Andersson DI. The cost of antibiotic resistance from a bacterial perspective. Drug Resist Updat. 2000: 3: 237-245. PMID: 11498391
    • (2000) Drug Resist Updat , vol.3 , pp. 237-245
    • Bjorkman, J.1    Andersson, D.I.2
  • 5
    • 0034537725 scopus 로고    scopus 로고
    • Compensatory evolution in rifampin-resistant Escherichia coli
    • PMID: 11102350
    • Reynolds MG. Compensatory evolution in rifampin-resistant Escherichia coli. Genetics. 2000: 156: 1471-1481. PMID: 11102350
    • (2000) Genetics , vol.156 , pp. 1471-1481
    • Reynolds, M.G.1
  • 6
    • 0034089028 scopus 로고    scopus 로고
    • Compensatory mutations, antibiotic resistance and the population genetics of adaptive evolution in bacteria
    • PMID: 10757748
    • Levin BR, Perrot V, Walker N. Compensatory mutations, antibiotic resistance and the population genetics of adaptive evolution in bacteria. Genetics. 2000: 154: 985-997. PMID: 10757748
    • (2000) Genetics , vol.154 , pp. 985-997
    • Levin, B.R.1    Perrot, V.2    Walker, N.3
  • 7
    • 0347992016 scopus 로고    scopus 로고
    • Amelioration of the cost of conjugative plasmid carriage in Eschericha coli K12
    • Dahlberg C, Chao L. Amelioration of the cost of conjugative plasmid carriage in Eschericha coli K12. Genetics. 2003: 165: 1641-1649.
    • (2003) Genetics , vol.165 , pp. 1641-1649
    • Dahlberg, C.1    Chao, L.2
  • 8
    • 84884696268 scopus 로고    scopus 로고
    • Dealing with the Evolutionary Downside of CRISPR Immunity: Bacteria and Beneficial Plasmids
    • PMID: 24086164
    • Jiang W, Maniv I, Arain F, Wang Y, Levin B, Marraffini LA. Dealing with the Evolutionary Downside of CRISPR Immunity: Bacteria and Beneficial Plasmids. PLoS Genetics. 2013: 9: e1003844 doi: 10.1371/journal.pgen.1003844 PMID: 24086164
    • (2013) PLoS Genetics , vol.9
    • Jiang, W.1    Maniv, I.2    Arain, F.3    Wang, Y.4    Levin, B.5    Marraffini, L.A.6
  • 10
    • 84855461111 scopus 로고    scopus 로고
    • Measuring selection coefficients below 10(-3): Method, questions, and prospects
    • PMID: 22042578
    • Gallet R, Cooper TF, Elena SF, Lenormand T. Measuring selection coefficients below 10(-3): method, questions, and prospects. Genetics. 2012: 190: 175-186. doi: 10.1534/genetics.111.133454 PMID: 22042578
    • (2012) Genetics , vol.190 , pp. 175-186
    • Gallet, R.1    Cooper, T.F.2    Elena, S.F.3    Lenormand, T.4
  • 11
    • 79960137718 scopus 로고    scopus 로고
    • Genetic variation and the fate of beneficial mutations in asexual populations
    • PMID: 21546542
    • Lang GI, Botstein D, Desai MM. Genetic variation and the fate of beneficial mutations in asexual populations. Genetics. 2011: 188: 647-661. doi: 10.1534/genetics.111.128942 PMID: 21546542
    • (2011) Genetics , vol.188 , pp. 647-661
    • Lang, G.I.1    Botstein, D.2    Desai, M.M.3
  • 12
    • 0034878705 scopus 로고    scopus 로고
    • Selection and characterization of Escherichia coli variants capable of growth on an otherwise toxic tryptophan analogue
    • PMID: 11514527
    • Bacher JM, Ellington AD. Selection and characterization of Escherichia coli variants capable of growth on an otherwise toxic tryptophan analogue. J Bacteriol. 2001: 183: 5414-5425. PMID: 11514527
    • (2001) J Bacteriol , vol.183 , pp. 5414-5425
    • Bacher, J.M.1    Ellington, A.D.2
  • 13
    • 0036156627 scopus 로고    scopus 로고
    • Frequency of bacteriocin resistance development and associated fitness costs in Listeria monocytogenes
    • PMID: 11823216
    • Gravesen A, Jydegaard Axelsen AM, Mendes da Silva J, Hansen TB, Knochel S Frequency of bacteriocin resistance development and associated fitness costs in Listeria monocytogenes. Appl Environ Microbiol. 2002: 68: 756-764. PMID: 11823216
    • (2002) Appl Environ Microbiol , vol.68 , pp. 756-764
    • Gravesen, A.1    Jydegaard Axelsen, A.M.2    Mendes Da Silva, J.3    Hansen, T.B.4    Knochel, S.5
  • 14
    • 70649114603 scopus 로고    scopus 로고
    • The fitness cost of streptomycin resistance depends on rpsL mutation, carbon source and RpoS (sigmaS)
    • PMID: 19652179
    • Paulander W, Maisnier-Patin S, Andersson DI. The fitness cost of streptomycin resistance depends on rpsL mutation, carbon source and RpoS (sigmaS). Genetics. 2009: 183: 539-546, 531SI-532SI. doi: 10.1534/genetics.109.106104 PMID: 19652179
    • (2009) Genetics , vol.183
    • Paulander, W.1    Maisnier-Patin, S.2    Andersson, D.I.3
  • 15
    • 79960836520 scopus 로고    scopus 로고
    • Epistasis buffers the fitness effects of rifampicin- resistance mutations in Pseudomonas aeruginosa
    • PMID: 21790582
    • Hall AR, MacLean RC. Epistasis buffers the fitness effects of rifampicin- resistance mutations in Pseudomonas aeruginosa. Evolution. 2011: 65: 2370-2379. doi: 10.1111/j.1558-5646.2011.01302.x PMID: 21790582
    • (2011) Evolution , vol.65 , pp. 2370-2379
    • Hall, A.R.1    MacLean, R.C.2
  • 16
    • 84874346133 scopus 로고    scopus 로고
    • Evolutionary rescue from extinction is contingent on a lower rate of environmental change
    • PMID: 23395960
    • Lindsey HA, Gallie J, Taylor S, Kerr B. Evolutionary rescue from extinction is contingent on a lower rate of environmental change. Nature. 2013: 494: 463-467. doi: 10.1038/nature11879 PMID: 23395960
    • (2013) Nature , vol.494 , pp. 463-467
    • Lindsey, H.A.1    Gallie, J.2    Taylor, S.3    Kerr, B.4
  • 17
    • 21844451165 scopus 로고    scopus 로고
    • Survivability of vancomycin resistant enterococci and fitness cost of vancomycin resistance acquisition
    • PMID: 15976344
    • Ramadhan AA, Hegedus E. Survivability of vancomycin resistant enterococci and fitness cost of vancomycin resistance acquisition. J Clin Pathol. 2005: 58: 744-746. PMID: 15976344
    • (2005) J Clin Pathol , vol.58 , pp. 744-746
    • Ramadhan, A.A.1    Hegedus, E.2
  • 18
    • 70349611730 scopus 로고    scopus 로고
    • Tn-seq: High-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
    • PMID: 19767758
    • van Opijnen T, Bodi KL, Camilli A. Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms. Nat Methods. 2009: 6: 767-772. doi: 10.1038/nmeth.1377 PMID: 19767758
    • (2009) Nat Methods , vol.6 , pp. 767-772
    • Van Opijnen, T.1    Bodi, K.L.2    Camilli, A.3
  • 19
    • 13244256910 scopus 로고    scopus 로고
    • Reduction of the fitness burden of quinolone resistance in Pseudomonas aeruginosa
    • PMID: 15574475
    • Kugelberg E, Lofmark S, Wretlind B, Andersson DI. Reduction of the fitness burden of quinolone resistance in Pseudomonas aeruginosa. J Antimicrob Chemother. 2005: 55: 22-30. PMID: 15574475
    • (2005) J Antimicrob Chemother , vol.55 , pp. 22-30
    • Kugelberg, E.1    Lofmark, S.2    Wretlind, B.3    Andersson, D.I.4
  • 20
    • 84895426677 scopus 로고    scopus 로고
    • Metabolic erosion primarily through mutation accumulation, and not tradeoffs, drives limited evolution of substrate specificity in Escherichia coli
    • PMID: 24558347
    • Leiby N, Marx CJ. Metabolic erosion primarily through mutation accumulation, and not tradeoffs, drives limited evolution of substrate specificity in Escherichia coli. PLoS Biol. 2014: 12: e1001789. doi: 10.1371/journal.pbio.1001789 PMID: 24558347
    • (2014) PLoS Biol , vol.12
    • Leiby, N.1    Marx, C.J.2
  • 21
    • 0002190026 scopus 로고
    • Gene mutation
    • Gerhardt P, editor. Washington, DC: American Society of Microbiology Press
    • Carlton B, Brown B. Gene mutation. In: Gerhardt P, editor. Manual of methods for general microbiology Washington, DC: American Society of Microbiology Press. 1981: 222-242.
    • (1981) Manual of Methods for General Microbiology , pp. 222-242
    • Carlton, B.1    Brown, B.2
  • 22
    • 69249203884 scopus 로고    scopus 로고
    • Bacterial growth properties at low optical densities
    • PMID: 19390987
    • Novak M, Pfeiffer T, Ackermann M, Bonhoeffer S. Bacterial growth properties at low optical densities. Antonie Van Leeuwenhoek. 2009: 96: 267-274. doi: 10.1007/s10482-009-9342-7 PMID: 19390987
    • (2009) Antonie Van Leeuwenhoek , vol.96 , pp. 267-274
    • Novak, M.1    Pfeiffer, T.2    Ackermann, M.3    Bonhoeffer, S.4
  • 23
    • 84891767235 scopus 로고    scopus 로고
    • Growth rates made easy
    • PMID: 24170494
    • Hall BG, Acar H, Nandipati A, Barlow M. Growth rates made easy. Mol Biol Evol. 2014: 31: 232-238. doi: 10.1093/molbev/mst187 PMID: 24170494
    • (2014) Mol Biol Evol , vol.31 , pp. 232-238
    • Hall, B.G.1    Acar, H.2    Nandipati, A.3    Barlow, M.4
  • 24
    • 0035029364 scopus 로고    scopus 로고
    • Biological cost and compensatory evolution in fusidic acid-resistant Staphylococcus aureus
    • PMID: 11309125
    • Nagaev I, Bjorkman J, Andersson DI, Hughes D. Biological cost and compensatory evolution in fusidic acid-resistant Staphylococcus aureus. Mol Microbiol. 2001: 40: 433-439. PMID: 11309125
    • (2001) Mol Microbiol , vol.40 , pp. 433-439
    • Nagaev, I.1    Bjorkman, J.2    Andersson, D.I.3    Hughes, D.4
  • 25
    • 0032870940 scopus 로고    scopus 로고
    • The biological cost of antibiotic resistance
    • PMID: 10508723
    • Andersson DI, Levin BR. The biological cost of antibiotic resistance. Curr Opin Microbiol. 1999: 2: 489-493. PMID: 10508723
    • (1999) Curr Opin Microbiol , vol.2 , pp. 489-493
    • Andersson, D.I.1    Levin, B.R.2
  • 27
    • 0001327030 scopus 로고
    • Structured habitats and the evolution of anticompetitor toxins in bacteria
    • PMID: 7031647
    • Chao L, Levin BR. Structured habitats and the evolution of anticompetitor toxins in bacteria. Proc Natl Acad Sci U S A. 1981: 78: 6324-6328. PMID: 7031647
    • (1981) Proc Natl Acad Sci U S A , vol.78 , pp. 6324-6328
    • Chao, L.1    Levin, B.R.2
  • 28
    • 79952756140 scopus 로고    scopus 로고
    • The population dynamics of bacteria in physically structured habitats and the adaptive virtue of random motility
    • PMID: 21325053
    • Wei Y, Wang X, Liu J, Nememan I, Singh AH, Levin BR. The population dynamics of bacteria in physically structured habitats and the adaptive virtue of random motility. Proc Natl Acad Sci U S A. 2011: 108: 4047-4052. doi: 10.1073/pnas.1013499108 PMID: 21325053
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 4047-4052
    • Wei, Y.1    Wang, X.2    Liu, J.3    Nememan, I.4    Singh, A.H.5    Levin, B.R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.