Coral reefs in the Anthropocene

Nature

Volumn 546, Issue 7656, 2017, Pages 82-90

  Hughes, Terry P ^a   Barnes, Michele L ^a   Bellwood, David R ^a   Cinner, Joshua E ^a   Cumming, Graeme S ^a   Jackson, Jeremy B C ^b,c   Kleypas, Joanie ^d   Van De Leemput, Ingrid A ^e   Lough, Janice M ^a,f   Morrison, Tiffany H ^a   Palumbi, Stephen R ^g   Van Nes, Egbert H ^e   Scheffer, Marten ^e  

^a JAMES COOK UNIVERSITY   (Australia)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c DEPARTMENT OF PALEOBIOLOGY   (United States)

^d NATIONAL CENTER FOR ATMOSPHERIC RESEARCH   (United States)

^e WAGENINGEN UNIVERSITY   (Netherlands)

^f AUSTRALIAN INSTITUTE OF MARINE SCIENCE   (Australia)

^g STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTHROPOCENE; ANTHROPOGENIC EFFECT; BIODIVERSITY; CLIMATE CHANGE; CLIMATE CONDITIONS; CLIMATE EFFECT; CLIMATE VARIATION; CORAL REEF; ECOSYSTEM MANAGEMENT; ECOSYSTEM SERVICE; ENVIRONMENTAL DEGRADATION; FUTURE PROSPECT; HISTORICAL RECORD;

BIODIVERSITY; BIOLOGICAL FUNCTIONS; CLIMATE CHANGE; CORAL REEF; ECONOMIC DEVELOPMENT; ECOSYSTEM; ENVIRONMENTAL CHANGE; MACROALGA; PRIORITY JOURNAL; REVIEW; SOCIAL CHANGE; SOCIAL NORM; TEMPERATURE; ACCLIMATIZATION; ANIMAL; ANTHOZOA; CHEMISTRY; ECOLOGY; ENVIRONMENTAL PROTECTION; GREENHOUSE EFFECT; HUMAN ACTIVITIES; PHYSIOLOGY; PREVENTION AND CONTROL; PROCEDURES; STATISTICS AND NUMERICAL DATA; TRENDS;

ANTHOZOA;

CARBON DIOXIDE; SEA WATER;

ACCLIMATIZATION; ANIMALS; ANTHOZOA; CARBON DIOXIDE; CONSERVATION OF NATURAL RESOURCES; CORAL REEFS; ECOLOGY; GLOBAL WARMING; HUMAN ACTIVITIES; SEAWATER;

EID: 85020215682     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature22901     Document Type: Review

References (108)

1. Crutzen, P. J. in Earth System Science in the Anthropocene (eds Ehlers, E. & Krafft, T.) 13-18 (Springer, 2006).
2. Rockström, J. et al. Planetary boundaries: exploring the safe operating space for humanity. Nature 461, 472-475 (2009). This groundbreaking study places human impacts on the environment in a global framework and provides a fresh understanding of social-ecological systems.
3. Waters, C. N. et al. The Anthropocene is functionally and stratigraphically distinct from the Holocene. Science 351, aad2622 (2016).
4. Scheffer, M. et al. Creating a safe operating space for iconic ecosystems. Science 347, 1317-1319 (2015).
5. Hughes, T. P. et al. Climate change, human impacts, and the resilience of coral reefs. Science 301, 929-933 (2003).
6. Pandolfi, J. M. et al. Global trajectories of the long-term decline of coral reef ecosystems. Science 301, 955-958 (2003).
7. Jackson, J. B. C., Donovan, M. K., Cramer, K. L. & Lam, V. Status and Trends of Caribbean Coral Reefs: 1970-2012 (Global Coral Reef Monitoring Network, 2014).
8. Heron, S. F., Maynard, J. A., van Hooidonk, R. & Eakin, C. M. Warming trends and bleaching stress of the world's coral reefs 1985-2012. Sci. Rep. 6, 38402 (2016).
9. Hoegh-Guldberg, O. et al. Coral reefs under rapid climate change and ocean acidification. Science 318, 1737-1742 (2007). A foundational paper that identifies both increases in temperature and ocean acidification as future threats to coral reefs.
10. Hughes, T. P., Graham, N. A. J., Jackson, J. B. C., Mumby, P. J. & Steneck, R. S. Rising to the challenge of sustaining coral reef resilience. Trends Ecol. Evol. 25, 633-642 (2010).
11. Pandolfi, J. M., Connolly, S. R., Marshall, D. J. & Cohen, A. L. Projecting coral reef futures under global warming and ocean acidification. Science 333, 418-422 (2011). This study identifies variable responses of reef corals to temperature increases and ocean acidification, which highlights the potential for alternative future trajectories for coral reefs.
12. Graham, N. A. J., Cinner, J. E., Norström, A. V. & Nyström, M. Coral reefs as novel ecosystems: embracing new futures. Curr. Opin. Env. Sust. 7, 9-14 (2014).
13. Harborne, A. R., Rogers, A., Bozec, Y.-M. & Mumby, P. J. Multiple stressors and the functioning of coral reefs. Annu. Rev. Mar. Sci. 9, 445-468 (2017).
14. UNFCCC. Adoption of the Paris Agreement. Report No. FCCC/CP/2015/L.9/Rev.1, http://unfccc.int/resource/docs/2015/cop21/eng/l09r01.pdf (UNFCCC, 2015).
15. Rogelj, J. et al. Paris Agreement climate proposals need boost to keep warming well below 2 °C. Nature 534, 631-639 (2016). A forward-looking evaluation of the potential for global reductions in the emission of greenhouse gases following the Paris agreement.
16. Rogelj, J. et al. Differences between carbon budget estimates unravelled. Nature Clim. Change 6, 245-252 (2016).
17. Mathias, J.-D., Anderies, J. M. & Janssen, M. A. On our rapidly shrinking capacity to comply with the planetary boundaries on climate change. Sci. Rep. 7, 42061 (2017).
18. Collins, M. et al. in Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change (eds Stocker, T. F. et al.) Ch. 12, 1029-1136 (Cambridge Univ. Press, 2013).
19. Hughes, T. P. et al. Global warming and recurrent mass bleaching of corals. Nature 543, 373-377 (2017).
20. Sutton, R. T., Dong, B. & Gregory, J. M. Land/sea warming ratio in response to climate change: IPCC AR4 model results and comparison with observations. Geophys. Res. Lett. 34, L02701 (2007).
21. Morice, C. P., Kennedy, J. J., Rayner, N. A. & Jones, P. D. Quantifying uncertainties in global and regional temperature change using an ensemble of observational estimates: the HadCRUT4 data set. J. Geophys. Res. 117, D08101 (2012).
22. Hoegh-Guldberg, O. et al. in Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part B: Regional Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change (eds Barros, V. R. et al.) Ch. 30, 1655-1731 (Cambridge Univ. Press, 2014).
23. Frieler, K. et al. Limiting global warming to 2 °C is unlikely to save most coral reefs. Nature Clim. Change 3, 165-170 (2013).
24. Gattuso, J.-P. & Hansson, L. Ocean Acidification (Oxford Univ. Press, 2011).
25. Rhein, M. et al. in Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change (eds Stocker, T. F. et al.) Ch. 3, 255-315 (Cambridge Univ. Press, 2013).
26. Orr, J. et al. Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms. Nature 437, 681-686 (2005).
27. Pandolfi, J. M. Incorporating uncertainty in predicting the future response of coral reefs to climate change. Annu. Rev. Ecol. Evol. Syst. 46, 281-303 (2015).
28. Poloczanska, E. S. et al. Responses of marine organisms to climate change across oceans. Front. Mar. Sci. 3, 62 (2016).
29. Chan, N. C. S. & Connolly, S. R. Sensitivity of coral calcification to ocean acidification: a meta-Analysis. Glob. Change Biol. 19, 282-290 (2013).
30. Cooper, T. F., O'Leary, R. A. & Lough, J. M. Growth of Western Australian corals in the Anthropocene. Science 335, 593-596 (2012).
31. Bellwood, D. R., Hoey, A. S. & Hughes, T. P. Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs. Proc. R. Soc. B 279, 1621-1629 (2012).
32. Graham, N. A. J. et al. Managing resilience to reverse phase shifts in coral reefs. Front. Ecol. Environ. 11, 541-548 (2013).
33. Swain, T. D. et al. Coral bleaching response index: a new tool to standardize and compare susceptibility to thermal bleaching. Glob. Change Biol. 22, 2475-2488 (2016).
34. Zhang, K., Dearing, J. A., Tong, S. L. & Hughes, T. P. China's degraded environment enters a new normal. Trends Ecol. Evol. 31, 175-177 (2016).
35. Barnosky, A. D. et al. Merging paleobiology with conservation biology to guide the future of terrestrial ecosystems. Science 355, eaah4787 (2017).
36. Vitousek, P. M., Mooney, H. A., Lubchenco, J. & Melillo, J. M. Human domination of Earth's ecosystems. Science 277, 494-499 (1997).
37. Bellwood, D. R., Hughes, T. P., Folke, C. & Nyström, M. Confronting the coral reef crisis. Nature 429, 827-833 (2004).
38. Hicks, C. C., Crowder, L. B., Graham, N. A. J., Kittinger, J. N. & Le Cornu, E. Social drivers forewarn of marine regime shifts. Front. Ecol. Environ. 14, 252-260 (2016).
39. Cinner, J. E. & Kittinger, J. N. in Ecology of Fishes on Coral Reefs (ed. Mora, C.) 215-220 (Cambridge Univ. Press, 2015).
40. Levin, S. et al. Social-ecological systems as complex adaptive systems: modeling and policy implications. Environ. Dev. Econ. 18, 111-132 (2013).
41. Fischer, J. et al. Advancing sustainability through mainstreaming a social-ecological systems perspective. Curr. Opin. Env. Sust. 14, 144-149 (2015).
42. Cumming, G. S., Morrison, T. H. & Hughes, T. P. New directions for understanding the spatial resilience of social-ecological systems. Ecosystems http://dx.doi.org/10.1007/s10021-016-0089-5 (2016).
43. Satake, A., Janssen, M. A., Levin, S. A. & Iwasa, Y. Synchronized deforestation induced by social learning under uncertainty of forest-use value. Ecol. Econ. 63, 452-462 (2007).
44. Martin, R. & Schlüter, M. Combining system dynamics and agent-based modeling to analyze social-ecological interactions-An example from modeling restoration of a shallow lake. Front. Environ. Sci. 3, 66 (2015).
45. Laborde, S. et al. Social-ecological feedbacks lead to unsustainable lock-in in an inland fishery. Glob. Environ. Change 41, 13-25 (2016).
46. Figueiredo, J. & Pereira, H. M. Regime shifts in a socio-ecological model of farmland abandonment. Landscape Ecol. 26, 737-749 (2011).
47. Ban, S. S., Graham, N. A. J. & Connolly, S. R. Evidence for multiple stressor interactions and effects on coral reefs. Glob. Change Biol. 20, 681-697 (2014).
48. Cinner, J. E. et al. Bright spots among the world's coral reefs. Nature 535, 416-419 (2016).
49. Graham, N. A. J., Jennings, S., MacNeil, M. A., Mouillot, D. & Wilson, S. K. Predicting climate-driven regime shifts versus rebound potential in coral reefs. Nature 518, 94-97 (2015).
50. Burke, L., Reytar, K., Spalding, M. & Perry, A. Reefs at Risk Revisited (World Resources Institute, 2011).
51. Halpern, B. S. et al. Spatial and temporal changes in cumulative human impacts on the world's ocean. Nature Commun. 6, 7615 (2015).
52. Hughes, T. P., Linares, C., Dakos, V., van de Leemput, I. A. & van Nes, E. H. Living dangerously on borrowed time during slow, unrecognized regime shifts. Trends Ecol. Evol. 28, 149-155 (2013).
53. Owen-Smith, N. Spatial ecology of large herbivore populations. Ecography 37, 416-430 (2014).
54. Plowright, R. K., Sokolow, S. H., Gorman, M. E., Daszak, P. & Foley, J. E. Causal inference in disease ecology: investigating ecological drivers of disease emergence. Front. Ecol. Environ. 6, 420-429 (2008).
55. Scheffer, M., Carpenter, S., Foley, J. A., Folke, C. & Walker, B. Catastrophic shifts in ecosystems. Nature 413, 591-596 (2001).
56. van de Leemput, I. A., Hughes, T. P., van Nes, E. H. & Scheffer, M. Multiple feedbacks and the prevalence of alternate stable states. Coral Reefs 35, 857-865 (2016).
57. Nyström, M. et al. Confronting feedbacks of degraded marine ecosystems. Ecosystems 15, 695-710 (2012).
58. Knowlton, N. & Jackson, J. B. C. Shifting baselines, local impacts, and global change on coral reefs. PLoS Biol. 6, 215-220 (2008).
59. Johnston, M. W. & Purkis, S. J. Spatial analysis of the invasion of lionfish in the western Atlantic and Caribbean. Mar. Pollut. Bull. 62, 1218-1226 (2011).
60. Cardinale, B. J. et al. Biodiversity loss and its impact on humanity. Nature 486, 59-67 (2012). This Review provides a scientific consensus on biodiversity, ecosystem functioning and their potential impacts on society.
61. Madin, J. S. et al. A trait-based approach to advance coral reef science. Trends Ecol. Evol. 31, 419-428 (2016).
62. Devictor, V. et al. Defining and measuring ecological specialization. J. Appl. Ecol. 47, 15-25 (2010).
63. Mouillot, D. et al. Functional over-redundancy and high functional vulnerability in global fish faunas on tropical reefs. Proc. Natl Acad. Sci. USA 111, 13757-13762 (2014).
64. Mouillot, D. et al. Rare species support vulnerable functions in high-diversity ecosystems. PLoS Biol. 11, e1001569 (2013). This paper highlights the potential vulnerability of high-diversity systems owing to the loss of rare species with functional importance.
65. Naeem, S., Duffy, J. E. & Zavaleta, E. The functions of biological diversity in an age of extinction. Science 336, 1401-1406 (2012).
66. Nyborg, K. et al. Social norms as solutions. Science 354, 42-43 (2016).
67. Gurney, G. G., Pressey, R. L., Cinner, J. E., Pollnac, R. & Campbell, S. J. Integrated conservation and development: evaluating a community-based marine protected area project for equality of socioeconomic impacts. Phil. Trans. R. Soc. B 370, 20140277 (2015).
68. Christie, P. et al. Improving human and environmental conditions through the Coral Triangle Initiative: progress and challenges. Curr. Opin. Env. Sust. 19, 169-181 (2016).
69. Johnson, A. E. Reducing bycatch in coral reef trap fisheries: escape gaps as a step towards sustainability. Mar. Ecol. Prog. Ser. 415, 201-209 (2010).
70. Barrett, C. B. & Constas, M. A. Toward a theory of resilience for international development applications. Proc. Natl Acad. Sci. USA 111, 14625-14630 (2014).
71. Arias, A. Understanding and managing compliance in the nature conservation context. J. Environ. Manage. 153, 134-143 (2015).
72. Ostrom, E. Polycentric systems for coping with collective action and global environmental change. Glob. Environ. Change 20, 550-557 (2010).
73. Brown, K. Resilience, Development and Global Change (Routledge, 2016).
74. Keohane, R. O. The global politics of climate change: challenge for political science. Political Sci. Politics 48, 19-26 (2015).
75. Ruckelshaus, M., Klinger, T., Knowlton, N. & DeMaster, D. P. Marine ecosystem-based management in practice: scientific and governance challenges. Bioscience 58, 53-63 (2008).
76. McCook, L. J. et al. Adaptive management of the Great Barrier Reef: a globally significant demonstration of the benefits of networks of marine reserves. Proc. Natl Acad. Sci. USA 107, 18278-18285 (2010).
77. Lubchenco, J., Cerny-Chipman, E. B., Reimer, J. N. & Levin, S. A. The right incentives enable ocean sustainability successes and provide hope for the future. Proc. Natl Acad. Sci. USA 113, 14507-14514 (2016).
78. Hughes, T. P., Bellwood, D. R., Folke, C., Steneck, R. S. & Wilson, J. New paradigms for supporting the resilience of marine ecosystems. Trends Ecol. Evol. 20, 380-386 (2005).
79. Lam, V. Y. Y., Doropoulos, C. & Mumby, P. J. The influence of resilience-based management on coral reef monitoring: a systematic review. PLoS ONE 12, e0172064 (2017).
80. Hobbs, R. J., Hallett, L. M., Ehrlich, P. R. & Mooney, H. A. Intervention ecology: applying ecological science in the twenty-first century. Bioscience 61, 442-450 (2011).
81. van Oppen, M. J. H., Oliver, J. K., Putnam, H. M. & Gates, R. D. Building coral reef resilience through assisted evolution. Proc. Natl Acad. Sci. USA 112, 2307-2313 (2015).
82. Hoegh-Guldberg, O. et al. Assisted colonization and rapid climate change. Science 321, 345-346 (2008).
83. Bayraktarov, E. et al. The cost and feasibility of marine coastal restoration. Ecol. Appl. 26, 1055-1074 (2016).
84. US National Marine Fisheries Service. Recovery Plan for Elkhorn Coral (Acropora palmata) and Staghorn Coral (A. cervicornis) http://www.nmfs.noaa.gov/pr/recovery/plans/final-Acropora-recovery-plan.pdf (2015).
85. Walker, B. et al. Looming global-scale failures and missing institutions. Science 325, 1345-1346 (2009).
86. Keohane, R. O. & Victor, D. G. The regime complex for climate change. Perspect. Polit. 9, 7-23 (2011).
87. Levin, K., Cashore, B., Bernstein, S. & Auld, G. Overcoming the tragedy of super wicked problems: constraining our future selves to ameliorate global climate change. Policy Sci. 45, 123-152 (2012).
88. Bai, X. et al. Plausible and desirable futures in the Anthropocene: a new research agenda. Glob. Environ. Change 39, 351-362 (2016).
89. Biermann, F. et al. Navigating the Anthropocene: improving earth system governance. Science 335, 1306-1307 (2012). A key paper that emphasizes the need for governance approaches to changes that occur in response to human impacts on the environment.
90. Cole, D. H. Advantages of a polycentric approach to climate change policy. Nature Clim. Change 5, 114-118 (2015).
91. Young, H. P. The evolution of social norms. Annu. Rev. Econom. 7, 359-387 (2015).
92. Kahneman, D. Thinking, Fast and Slow (Farrar, Straus and Giroux, 2011).
93. Oliver, T. H. et al. Biodiversity and resilience of ecosystem functions. Trends Ecol. Evol. 30, 673-684 (2015).
94. Ferraro, P. J. & Pressey, R. L. Measuring the difference made by conservation initiatives: protected areas and their environmental and social impacts. Phil. Trans. R. Soc. B 370, 20140270 (2015).
95. Rogelj, J., Meinshausen, M. & Knutti, R. Global warming under old and new scenarios using IPCC climate sensitivity range estimates. Nature Clim. Change 2, 248-253 (2012).
96. Hartmann, D. et al. in Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change (eds Stocker, T. F. et al.) Ch. 2, 159-254 (Cambridge Univ. Press, 2013).
97. Rayner, N. A. et al. Global analyses of sea surface temperature, sea ice, and night marine air temperature since the late nineteenth century. J. Geophys. Res. 108, 4407 (2003). A foundational study that establishes the main physical characteristics of global climate change.
98. Lough, J. M. Small change, big difference: sea surface temperature distributions for tropical coral reef ecosystems, 1950-2011. J. Geophys. Res. 117, C09018 (2012).
99. Palumbi, S. R., Barshis, D. J., Traylor-Knowles, N. & Bay, R. A. Mechanisms of reef coral resistance to future climate change. Science 344, 895-898 (2014).
100. Kenkel, C. D. & Matz, M. V. Gene expression plasticity as a mechanism of coral adaptation to a variable environment. Nature Ecol. Evol. 1, 0014 (2016).
101. Baker, A. C. Reef corals bleach to survive change. Nature 411, 765-766 (2001).
102. Dixon, G. B. et al. Genomic determinants of coral heat tolerance across latitudes. Science 348, 1460-1462 (2015).
103. Howells, E. J., Berkelmans, R., van Oppen, M. J. H., Willis, B. L. & Bay, L. K. Historical thermal regimes define limits to coral acclimatization. Ecology 94, 1078-1088 (2013).
104. Bay, R. A. & Palumbi, S. R. Multilocus adaptation associated with heat resistance in reef-building corals. Curr. Biol. 24, 2952-2956 (2014).
105. Silverstein, R. N., Cunning, R. & Baker, A. C. Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals. Glob. Change Biol. 21, 236-249 (2015).
106. Munday, P. L., Donelson, J. M. & Domingos, J. A. Potential for adaptation to climate change in a coral reef fish. Glob. Change Biol. 23, 307-317 (2017).
107. Putnam, H. M., Davidson, J. M. & Gates, R. D. Ocean acidification influences host DNA methylation and phenotypic plasticity in environmentally susceptible corals. Evol. Appl. 9, 1165-1178 (2016).
108. Ainsworth, T. D. et al. Climate change disables coral bleaching protection on the Great Barrier Reef. Science 352, 338-342 (2016).