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Volumn 546, Issue 7656, 2017, Pages 162-167

Applying systems-level spectral imaging and analysis to reveal the organelle interactome

Author keywords

[No Author keywords available]

Indexed keywords

FAT DROPLET; FATTY ACID; FLUORESCENT DYE; LIPID;

EID: 85020197931     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature22369     Document Type: Review
Times cited : (794)

References (39)
  • 1
    • 84938699454 scopus 로고    scopus 로고
    • Lipid droplet-organelle interactions: Emerging roles in lipid metabolism
    • Barbosa, A. D., Savage, D. B. & Siniossoglou, S. Lipid droplet-organelle interactions: emerging roles in lipid metabolism. Curr. Opin. Cell Biol. 35, 91-97 (2015).
    • (2015) Curr. Opin. Cell Biol , vol.35 , pp. 91-97
    • Barbosa, A.D.1    Savage, D.B.2    Siniossoglou, S.3
  • 3
    • 84876812269 scopus 로고    scopus 로고
    • Signals from the lysosome: A control centre for cellular clearance and energy metabolism
    • Settembre, C., Fraldi, A., Medina, D. L. & Ballabio, A. Signals from the lysosome: a control centre for cellular clearance and energy metabolism. Nat. Rev. Mol. Cell Biol. 14, 283-296 (2013).
    • (2013) Nat. Rev. Mol. Cell Biol , vol.14 , pp. 283-296
    • Settembre, C.1    Fraldi, A.2    Medina, D.L.3    Ballabio, A.4
  • 5
    • 84955677104 scopus 로고    scopus 로고
    • Structure and function of er membrane contact sites with other organelles
    • Phillips, M. J. & Voeltz, G. K. Structure and function of ER membrane contact sites with other organelles. Nat. Rev. Mol. Cell Biol. 17, 69-82 (2016).
    • (2016) Nat. Rev. Mol. Cell Biol , vol.17 , pp. 69-82
    • Phillips, M.J.1    Voeltz, G.K.2
  • 6
    • 84911472010 scopus 로고    scopus 로고
    • Er contact sites define the position and timing of endosome fission
    • Rowland, A. A., Chitwood, P. J., Phillips, M. J. & Voeltz, G. K. ER contact sites define the position and timing of endosome fission. Cell 159, 1027-1041 (2014).
    • (2014) Cell , vol.159 , pp. 1027-1041
    • Rowland, A.A.1    Chitwood, P.J.2    Phillips, M.J.3    Voeltz, G.K.4
  • 7
    • 80054844842 scopus 로고    scopus 로고
    • Er tubules mark sites of mitochondrial division
    • Friedman, J. R. et al. ER tubules mark sites of mitochondrial division. Science 334, 358-362 (2011).
    • (2011) Science , vol.334 , pp. 358-362
    • Friedman, J.R.1
  • 8
    • 84898715853 scopus 로고    scopus 로고
    • Arf1/copi machinery acts directly on lipid droplets and enables their connection to the er for protein targeting
    • Wilfling, F. et al. Arf1/COPI machinery acts directly on lipid droplets and enables their connection to the ER for protein targeting. eLife 3, e01607 (2014).
    • (2014) ELife , vol.3 , pp. e01607
    • Wilfling, F.1
  • 9
    • 0742286846 scopus 로고    scopus 로고
    • Optimizing imaging parameters for the separation of multiple labels in a fluorescence image
    • Neher, R. & Neher, E. Optimizing imaging parameters for the separation of multiple labels in a fluorescence image. J. Microsc. 213, 46-62 (2004).
    • (2004) J. Microsc , vol.213 , pp. 46-62
    • Neher, R.1    Neher, E.2
  • 10
    • 84908251017 scopus 로고    scopus 로고
    • Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution
    • Chen, B.-C. et al. Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution. Science 346, 1257998 (2014).
    • (2014) Science , vol.346 , pp. 1257998
    • Chen, B.-C.1
  • 11
    • 84941602304 scopus 로고    scopus 로고
    • Ampk activation promotes lipid droplet dispersion on detyrosinated microtubules to increase mitochondrial fatty acid oxidation
    • Herms, A. et al. AMPK activation promotes lipid droplet dispersion on detyrosinated microtubules to increase mitochondrial fatty acid oxidation. Nat. Commun. 6, 7176 (2015).
    • (2015) Nat. Commun , vol.6 , pp. 7176
    • Herms, A.1
  • 12
    • 77955459468 scopus 로고    scopus 로고
    • Er sliding dynamics and er-mitochondrial contacts occur on acetylated microtubules
    • Friedman, J. R., Webster, B. M., Mastronarde, D. N., Verhey, K. J. & Voeltz, G. K. ER sliding dynamics and ER-mitochondrial contacts occur on acetylated microtubules. J. Cell Biol. 190, 363-375 (2010).
    • (2010) J. Cell Biol , vol.190 , pp. 363-375
    • Friedman, J.R.1    Webster, B.M.2    Mastronarde, D.N.3    Verhey, K.J.4    Voeltz, G.K.5
  • 13
    • 84855602576 scopus 로고    scopus 로고
    • Interplay between microtubule dynamics and intracellular organization
    • de Forges, H., Bouissou, A. & Perez, F. Interplay between microtubule dynamics and intracellular organization. Int. J. Biochem. Cell Biol. 44, 266-274 (2012).
    • (2012) Int. J. Biochem. Cell Biol , vol.44 , pp. 266-274
    • De Forges, H.1    Bouissou, A.2    Perez, F.3
  • 14
    • 84875462369 scopus 로고    scopus 로고
    • Endoplasmic reticulum-endosome contact increases as endosomes traffic and mature
    • Friedman, J. R., Dibenedetto, J. R., West, M., Rowland, A. A. & Voeltz, G. K. Endoplasmic reticulum-endosome contact increases as endosomes traffic and mature. Mol. Biol. Cell 24, 1030-1040 (2013).
    • (2013) Mol. Biol. Cell , vol.24 , pp. 1030-1040
    • Friedman, J.R.1    Dibenedetto, J.R.2    West, M.3    Rowland, A.A.4    Voeltz, G.K.5
  • 15
    • 84907959940 scopus 로고    scopus 로고
    • Visualization and correction of automated segmentation, tracking and lineaging from 5-d stem cell image sequences
    • Wait, E. et al. Visualization and correction of automated segmentation, tracking and lineaging from 5-D stem cell image sequences. BMC Bioinformatics 15, 328 (2014).
    • (2014) BMC Bioinformatics , vol.15 , pp. 328
    • Wait, E.1
  • 16
    • 84925324049 scopus 로고    scopus 로고
    • Fatty acid trafficking in starved cells: Regulation by lipid droplet lipolysis, autophagy, and mitochondrial fusion dynamics
    • Rambold, A. S., Cohen, S. & Lippincott-Schwartz, J. Fatty acid trafficking in starved cells: regulation by lipid droplet lipolysis, autophagy, and mitochondrial fusion dynamics. Dev. Cell 32, 678-692 (2015).
    • (2015) Dev. Cell , vol.32 , pp. 678-692
    • Rambold, A.S.1    Cohen, S.2    Lippincott-Schwartz, J.3
  • 17
    • 65949095803 scopus 로고    scopus 로고
    • Autophagy regulates lipid metabolism
    • Singh, R. et al. Autophagy regulates lipid metabolism. Nature 458, 1131-1135 (2009).
    • (2009) Nature , vol.458 , pp. 1131-1135
    • Singh, R.1
  • 18
    • 38549141572 scopus 로고    scopus 로고
    • Cellular cholesterol trafficking and compartmentalization
    • Ikonen, E. Cellular cholesterol trafficking and compartmentalization. Nat. Rev. Mol. Cell Biol. 9, 125-138 (2008).
    • (2008) Nat. Rev. Mol. Cell Biol , vol.9 , pp. 125-138
    • Ikonen, E.1
  • 19
    • 84997530226 scopus 로고    scopus 로고
    • A tether is a tether is a tether: Tethering at membrane contact sites
    • Eisenberg-Bord, M., Shai, N., Schuldiner, M. & Bohnert, M. A tether is a tether is a tether: tethering at membrane contact sites. Dev. Cell 39, 395-409 (2016).
    • (2016) Dev. Cell , vol.39 , pp. 395-409
    • Eisenberg-Bord, M.1    Shai, N.2    Schuldiner, M.3    Bohnert, M.4
  • 20
    • 0037072602 scopus 로고    scopus 로고
    • A photoactivatable gfp for selective photolabeling of proteins and cells
    • Patterson, G. H. & Lippincott-Schwartz, J. A photoactivatable GFP for selective photolabeling of proteins and cells. Science 297, 1873-1877 (2002).
    • (2002) Science , vol.297 , pp. 1873-1877
    • Patterson, G.H.1    Lippincott-Schwartz, J.2
  • 21
    • 33646238977 scopus 로고    scopus 로고
    • Monitoring chaperone engagement of substrates in the endoplasmic reticulum of live cells
    • Snapp, E. L., Sharma, A., Lippincott-Schwartz, J. & Hegde, R. S. Monitoring chaperone engagement of substrates in the endoplasmic reticulum of live cells. Proc. Natl Acad. Sci. USA 103, 6536-6541 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 6536-6541
    • Snapp, E.L.1    Sharma, A.2    Lippincott-Schwartz, J.3    Hegde, R.S.4
  • 22
    • 33646791462 scopus 로고    scopus 로고
    • The origin and maintenance of mammalian peroxisomes involves a de novo pex16-dependent pathway from the er
    • Kim, P. K., Mullen, R. T., Schumann, U. & Lippincott-Schwartz, J. The origin and maintenance of mammalian peroxisomes involves a de novo PEX16-dependent pathway from the ER. J. Cell Biol. 173, 521-532 (2006).
    • (2006) J. Cell Biol , vol.173 , pp. 521-532
    • Kim, P.K.1    Mullen, R.T.2    Schumann, U.3    Lippincott-Schwartz, J.4
  • 24
    • 0018306059 scopus 로고
    • A threshold selection method from gray-level histograms
    • Otsu, N. A threshold selection method from gray-level histograms. IEEE Trans. Syst. Man Cybern. 9, 62-66 (1979).
    • (1979) IEEE Trans. Syst. Man Cybern , vol.9 , pp. 62-66
    • Otsu, N.1
  • 25
    • 48449087576 scopus 로고    scopus 로고
    • Robust single-particle tracking in live-cell time-lapse sequences
    • Jaqaman, K. et al. Robust single-particle tracking in live-cell time-lapse sequences. Nat. Methods 5, 695-702 (2008).
    • (2008) Nat. Methods , vol.5 , pp. 695-702
    • Jaqaman, K.1
  • 26
    • 85000897607 scopus 로고    scopus 로고
    • Piecing together the patchwork of contact sites
    • Gatta, A. T. & Levine, T. P. Piecing Together the Patchwork of Contact Sites. Trends Cell Biol. 27, 214-229 (2016).
    • (2016) Trends Cell Biol , vol.27 , pp. 214-229
    • Gatta, A.T.1    Levine, T.P.2
  • 28
    • 85015241515 scopus 로고    scopus 로고
    • Lever: Software tools for segmentation, tracking and lineaging of proliferating cells
    • Winter, M., Mankowski, W., Wait, E., Temple, S. & Cohen, A. R. LEVER: software tools for segmentation, tracking and lineaging of proliferating cells. Bioinformatics 32, 3530-3531 (2016).
    • (2016) Bioinformatics , vol.32 , pp. 3530-3531
    • Winter, M.1    Mankowski, W.2    Wait, E.3    Temple, S.4    Cohen, A.R.5
  • 29
    • 67650438358 scopus 로고    scopus 로고
    • Automatic summarization of changes in biological image sequences using algorithmic information theory
    • Cohen, A. R., Bjornsson, C. S., Temple, S., Banker, G. & Roysam, B. Automatic summarization of changes in biological image sequences using algorithmic information theory. IEEE Trans. Pattern Anal. Mach. Intell. 31, 1386-1403 (2009).
    • (2009) IEEE Trans. Pattern Anal. Mach. Intell , vol.31 , pp. 1386-1403
    • Cohen, A.R.1    Bjornsson, C.S.2    Temple, S.3    Banker, G.4    Roysam, B.5
  • 31
    • 33749153645 scopus 로고    scopus 로고
    • Spectral imaging: Principles and applications
    • Garini, Y., Young, I. T. & McNamara, G. Spectral imaging: principles and applications. Cytometry A 69, 735-747 (2006).
    • (2006) Cytometry A , vol.69 , pp. 735-747
    • Garini, Y.1    Young, I.T.2    McNamara, G.3
  • 32
    • 79952769971 scopus 로고    scopus 로고
    • Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging
    • Valm, A. M. et al. Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging. Proc. Natl Acad. Sci. USA 108, 4152-4157 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 4152-4157
    • Valm, A.M.1
  • 33
    • 84979529845 scopus 로고    scopus 로고
    • Multiplexed spectral imaging of 120 different fluorescent labels
    • Valm, A. M., Oldenbourg, R. & Borisy, G. G. Multiplexed spectral imaging of 120 different fluorescent labels. PLoS One 11, e0158495 (2016).
    • (2016) PLoS One , vol.11 , pp. e0158495
    • Valm, A.M.1    Oldenbourg, R.2    Borisy, G.G.3
  • 34
    • 84930182584 scopus 로고    scopus 로고
    • Multispectral labeling technique to map many neighboring axonal projections in the same tissue
    • Tsuriel, S., Gudes, S., Draft, R. W., Binshtok, A. M. & Lichtman, J. W. Multispectral labeling technique to map many neighboring axonal projections in the same tissue. Nat. Methods 12, 547-552 (2015).
    • (2015) Nat. Methods , vol.12 , pp. 547-552
    • Tsuriel, S.1    Gudes, S.2    Draft, R.W.3    Binshtok, A.M.4    Lichtman, J.W.5
  • 35
    • 30944467113 scopus 로고    scopus 로고
    • A guide to choosing fluorescent proteins
    • Shaner, N. C., Steinbach, P. A. & Tsien, R. Y. A guide to choosing fluorescent proteins. Nat. Methods 2, 905-909 (2005).
    • (2005) Nat. Methods , vol.2 , pp. 905-909
    • Shaner, N.C.1    Steinbach, P.A.2    Tsien, R.Y.3
  • 36
    • 84980411254 scopus 로고    scopus 로고
    • A far-red fluorescent protein evolved from a cyanobacterial phycobiliprotein
    • Rodriguez, E. A. et al. A far-red fluorescent protein evolved from a cyanobacterial phycobiliprotein. Nat. Methods 13, 763-769 (2016).
    • (2016) Nat. Methods , vol.13 , pp. 763-769
    • Rodriguez, E.A.1
  • 38
    • 0035205294 scopus 로고    scopus 로고
    • Multi-spectral imaging and linear unmixing add a whole new dimension to laser scanning fluorescence microscopy
    • Dickinson, M. E., Bearman, G., Tille, S., Lansford, R. & Fraser, S. E. Multi-spectral imaging and linear unmixing add a whole new dimension to laser scanning fluorescence microscopy. Biotechniques 31, 1272-1278 (2001).
    • (2001) Biotechniques , vol.31 , pp. 1272-1278
    • Dickinson, M.E.1    Bearman, G.2    Tille, S.3    Lansford, R.4    Fraser, S.E.5
  • 39
    • 84863205849 scopus 로고    scopus 로고
    • Nih image to imagej: 25 years of image analysis
    • Schneider, C. A., Rasband, W. S. & Eliceiri, K. W. NIH Image to ImageJ: 25 years of image analysis. Nat. Methods 9, 671-675 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 671-675
    • Schneider, C.A.1    Rasband, W.S.2    Eliceiri, K.W.3


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