메뉴 건너뛰기




Volumn 10, Issue 3, 2017, Pages 313-321

Text Mining of the Electronic Health Record: An Information Extraction Approach for Automated Identification and Subphenotyping of HFpEF Patients for Clinical Trials

Author keywords

Clinical trials; Information extraction; Natural language processing; Precision medicine

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATION; CLINICAL STUDY; CLINICAL TRIAL (TOPIC); DATA MINING; ELECTRONIC HEALTH RECORD; HEART FAILURE WITH PRESERVED EJECTION FRACTION; HUMAN; INFORMATION PROCESSING; MAJOR CLINICAL STUDY; MEDICAL INFORMATION; PATIENT IDENTIFICATION; PERSONALIZED MEDICINE; PREDICTIVE VALUE; PRIORITY JOURNAL; SENSITIVITY ANALYSIS; CLASSIFICATION; ECHOCARDIOGRAPHY; HEART FAILURE; HEART STROKE VOLUME; NATURAL LANGUAGE PROCESSING; ORGANIZATION AND MANAGEMENT; PATHOPHYSIOLOGY; PATIENT SELECTION; PHENOTYPE; PROCEDURES; REPRODUCIBILITY;

EID: 85020169156     PISSN: 19375387     EISSN: 19375395     Source Type: Journal    
DOI: 10.1007/s12265-017-9752-2     Document Type: Article
Times cited : (54)

References (42)
  • 1
    • 84861235431 scopus 로고    scopus 로고
    • Mining electronic health records: towards better research applications and clinical care
    • COI: 1:CAS:528:DC%2BC38XmtlGqtrY%3D, PID: 22549152
    • Jensen, P. B., Jensen, L. J., & Brunak, S. (2012). Mining electronic health records: towards better research applications and clinical care. Nature Reviews. Genetics, 13(6), 395–405.
    • (2012) Nature Reviews. Genetics , vol.13 , Issue.6 , pp. 395-405
    • Jensen, P.B.1    Jensen, L.J.2    Brunak, S.3
  • 3
    • 85024835241 scopus 로고    scopus 로고
    • Accessed 10th August 2015
    • PARAGON Inclusion/Exclusion Criteria (2015). https://sjonnalagadda.files.wordpress.com/2015/08/paragon_ie-criteria_10-01-2014.pdf. Accessed 10th August 2015.
    • (2015) PARAGON Inclusion/Exclusion Criteria
  • 4
    • 0345863927 scopus 로고    scopus 로고
    • The unified medical language system (UMLS): integrating biomedical terminology
    • COI: 1:CAS:528:DC%2BD3sXhtVSrurvM, PID: 14681409
    • Bodenreider, O. (2004). The unified medical language system (UMLS): integrating biomedical terminology. Nucleic Acids Research, 32(Database issue), D267–D270.
    • (2004) Nucleic Acids Research , vol.32 , Issue.Database issue , pp. D267-D270
    • Bodenreider, O.1
  • 5
    • 70349470770 scopus 로고    scopus 로고
    • ConText: an algorithm for determining negation, experiencer, and temporal status from clinical reports
    • PID: 19435614
    • Harkema, H., Dowling, J. N., Thornblade, T., & Chapman, W. W. (2009). ConText: an algorithm for determining negation, experiencer, and temporal status from clinical reports. Journal of Biomedical Informatics, 42(5), 839–851.
    • (2009) Journal of Biomedical Informatics , vol.42 , Issue.5 , pp. 839-851
    • Harkema, H.1    Dowling, J.N.2    Thornblade, T.3    Chapman, W.W.4
  • 6
    • 70349677742 scopus 로고    scopus 로고
    • Implementation and evaluation of a negation tagger in a pipeline-based system for information extract from pathology reports
    • PID: 15360896
    • Mitchell, K. J., Becich, M. J., Berman, J. J., Chapman, W. W., Gilbertson, J., Gupta, D., et al. (2004). Implementation and evaluation of a negation tagger in a pipeline-based system for information extract from pathology reports. Studies in Health Technology and Informatics, 107(Pt 1), 663–667.
    • (2004) Studies in Health Technology and Informatics , vol.107 , pp. 663-667
    • Mitchell, K.J.1    Becich, M.J.2    Berman, J.J.3    Chapman, W.W.4    Gilbertson, J.5    Gupta, D.6
  • 7
    • 84877259591 scopus 로고    scopus 로고
    • Baseline characteristics of patients in the treatment of preserved cardiac function heart failure with an aldosterone antagonist trial
    • COI: 1:CAS:528:DC%2BC3sXntVOqsLo%3D, PID: 23258572
    • Shah, S. J., Heitner, J. F., Sweitzer, N. K., Anand, I. S., Kim, H. Y., Harty, B., et al. (2013). Baseline characteristics of patients in the treatment of preserved cardiac function heart failure with an aldosterone antagonist trial. Circulation. Heart Failure, 6(2), 184–192.
    • (2013) Circulation. Heart Failure , vol.6 , Issue.2 , pp. 184-192
    • Shah, S.J.1    Heitner, J.F.2    Sweitzer, N.K.3    Anand, I.S.4    Kim, H.Y.5    Harty, B.6
  • 8
    • 84993982768 scopus 로고    scopus 로고
    • How to develop and implement a specialized heart failure with preserved ejection fraction clinical program
    • PID: 27796858
    • Shah, S. J., Cogswell, R., Ryan, J. J., & Sharma, K. (2016). How to develop and implement a specialized heart failure with preserved ejection fraction clinical program. Current Cardiology Reports, 18(12), 122.
    • (2016) Current Cardiology Reports , vol.18 , Issue.12 , pp. 122
    • Shah, S.J.1    Cogswell, R.2    Ryan, J.J.3    Sharma, K.4
  • 10
    • 84875373295 scopus 로고    scopus 로고
    • Conceptualising and creating a global learning health system
    • PID: 22717661
    • Friedman, C., & Rigby, M. (2013). Conceptualising and creating a global learning health system. International Journal of Medical Informatics, 82(4), e63–e71.
    • (2013) International Journal of Medical Informatics , vol.82 , Issue.4 , pp. e63-e71
    • Friedman, C.1    Rigby, M.2
  • 11
    • 2942578063 scopus 로고    scopus 로고
    • A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen
    • COI: 1:CAS:528:DC%2BD2cXltlGgsLs%3D, PID: 15193263
    • Ma, X.-J., Wang, Z., Ryan, P. D., Isakoff, S. J., Barmettler, A., Fuller, A., et al. (2004). A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen. Cancer Cell, 5(6), 607–616.
    • (2004) Cancer Cell , vol.5 , Issue.6 , pp. 607-616
    • Ma, X.-J.1    Wang, Z.2    Ryan, P.D.3    Isakoff, S.J.4    Barmettler, A.5    Fuller, A.6
  • 14
    • 84931577759 scopus 로고    scopus 로고
    • Identifying prognostic factors predicting outcome in patients with chronic neck pain after multimodal treatment: a retrospective study
    • COI: 1:STN:280:DC%2BC2MrpslWnsQ%3D%3D, PID: 25725590
    • De Pauw, R., Kregel, J., De Blaiser, C., Van Akeleyen, J., Logghe, T., Danneels, L., et al. (2015). Identifying prognostic factors predicting outcome in patients with chronic neck pain after multimodal treatment: a retrospective study. Manual Therapy, 20(4), 592–597.
    • (2015) Manual Therapy , vol.20 , Issue.4 , pp. 592-597
    • De Pauw, R.1    Kregel, J.2    De Blaiser, C.3    Van Akeleyen, J.4    Logghe, T.5    Danneels, L.6
  • 15
    • 8844264542 scopus 로고    scopus 로고
    • A first step towards translating evidence into practice: heart failure in a community practice-based research network
    • PID: 15606986
    • Onofrei, M., Hunt, J., Siemienczuk, J., Touchette, D. R., & Middleton, B. (2004). A first step towards translating evidence into practice: heart failure in a community practice-based research network. Informatics in Primary Care, 12(3), 139–145.
    • (2004) Informatics in Primary Care , vol.12 , Issue.3 , pp. 139-145
    • Onofrei, M.1    Hunt, J.2    Siemienczuk, J.3    Touchette, D.R.4    Middleton, B.5
  • 18
    • 81055125476 scopus 로고    scopus 로고
    • Handling anticipated exceptions in clinical care: investigating clinician use of ‘exit strategies’ in an electronic health records system
    • Zheng, K., Hanauer, D. A., Padman, R., Johnson, M. P., Hussain, A. A., Ye, W., et al. (2011). Handling anticipated exceptions in clinical care: investigating clinician use of ‘exit strategies’ in an electronic health records system. Journal of the American Medical Informatics Association, 18(6), 883–889.
    • (2011) Journal of the American Medical Informatics Association , vol.18 , Issue.6 , pp. 883-889
    • Zheng, K.1    Hanauer, D.A.2    Padman, R.3    Johnson, M.P.4    Hussain, A.A.5    Ye, W.6
  • 19
    • 85017728459 scopus 로고    scopus 로고
    • How essential are unstructured clinical narratives and information fusion to clinical trial recruitment?
    • PID: 25717416
    • Raghavan, P., Chen, J. L., Fosler-Lussier, E., & Lai, A. M. (2014). How essential are unstructured clinical narratives and information fusion to clinical trial recruitment? AMIA Jt Summits Transl Sci Proc, 2014, 218–223.
    • (2014) AMIA Jt Summits Transl Sci Proc , vol.2014 , pp. 218-223
    • Raghavan, P.1    Chen, J.L.2    Fosler-Lussier, E.3    Lai, A.M.4
  • 21
    • 80052053976 scopus 로고    scopus 로고
    • The promise of electronic records: around the corner or down the road?
    • COI: 1:CAS:528:DC%2BC3MXhtFSms77F, PID: 21862751
    • Jha, A. K. (2011). The promise of electronic records: around the corner or down the road? JAMA, 306(8), 880–881.
    • (2011) JAMA , vol.306 , Issue.8 , pp. 880-881
    • Jha, A.K.1
  • 22
    • 84883747248 scopus 로고    scopus 로고
    • Natural language processing: State of the art and prospects for significant progress, a workshop sponsored by the National Library of Medicine
    • Friedman, C., Rindflesch, T. C., & Corn, M. (2013). Natural language processing: State of the art and prospects for significant progress, a workshop sponsored by the National Library of Medicine. Journal of Biomedical Informatics, 46(5), 765–773.
    • (2013) Journal of Biomedical Informatics , vol.46 , Issue.5 , pp. 765-773
    • Friedman, C.1    Rindflesch, T.C.2    Corn, M.3
  • 25
    • 71949119436 scopus 로고    scopus 로고
    • Use of international classification of diseases, ninth revision, clinical modification codes and medication use data to identify nosocomial Clostridium difficile infection
    • PID: 19803724
    • Mia Schmiedeskamp, P. P., Spencer Harpe, P. P. M. P. H., Ronald Polk, P., Michael Oinonen, P. M. P. H., & Amy Pakyz, P. M. S. (2009). Use of international classification of diseases, ninth revision, clinical modification codes and medication use data to identify nosocomial Clostridium difficile infection. Infection Control and Hospital Epidemiology, 30(11), 1070–1076.
    • (2009) Infection Control and Hospital Epidemiology , vol.30 , Issue.11 , pp. 1070-1076
    • Mia Schmiedeskamp, P.P.1    Spencer Harpe, P.P.M.P.H.2    Ronald Polk, P.3    Michael Oinonen, P.M.P.H.4    Amy Pakyz, P.M.S.5
  • 26
    • 77950867408 scopus 로고    scopus 로고
    • Automated matching software for clinical trials eligibility: measuring efficiency and flexibility
    • PID: 20230913
    • Penberthy, L., Brown, R., Puma, F., & Dahman, B. (2010). Automated matching software for clinical trials eligibility: measuring efficiency and flexibility. Contemporary Clinical Trials, 31(3), 207–217.
    • (2010) Contemporary Clinical Trials , vol.31 , Issue.3 , pp. 207-217
    • Penberthy, L.1    Brown, R.2    Puma, F.3    Dahman, B.4
  • 28
    • 49949092803 scopus 로고    scopus 로고
    • Automated identification of acute hepatitis B using electronic medical record data to facilitate public health surveillance
    • PID: 18612462
    • Klompas, M., Haney, G., Church, D., Lazarus, R., Hou, X., & Platt, R. (2008). Automated identification of acute hepatitis B using electronic medical record data to facilitate public health surveillance. PloS One, 3(7), e2626.
    • (2008) PloS One , vol.3 , Issue.7
    • Klompas, M.1    Haney, G.2    Church, D.3    Lazarus, R.4    Hou, X.5    Platt, R.6
  • 30
    • 79952741160 scopus 로고    scopus 로고
    • Data mining methods for classification of Medium-Chain Acyl-CoA dehydrogenase deficiency (MCADD) using non-derivatized tandem MS neonatal screening data
    • PID: 21167313
    • Van den Bulcke, T., Vanden Broucke, P., Van Hoof, V., Wouters, K., Vanden Broucke, S., Smits, G., et al. (2011). Data mining methods for classification of Medium-Chain Acyl-CoA dehydrogenase deficiency (MCADD) using non-derivatized tandem MS neonatal screening data. Journal of Biomedical Informatics, 44(2), 319–325.
    • (2011) Journal of Biomedical Informatics , vol.44 , Issue.2 , pp. 319-325
    • Van den Bulcke, T.1    Vanden Broucke, P.2    Van Hoof, V.3    Wouters, K.4    Vanden Broucke, S.5    Smits, G.6
  • 31
    • 80052891202 scopus 로고    scopus 로고
    • Combining PubMed knowledge and EHR data to develop a weighted bayesian network for pancreatic cancer prediction
    • PID: 21642013
    • Zhao, D., & Weng, C. (2011). Combining PubMed knowledge and EHR data to develop a weighted bayesian network for pancreatic cancer prediction. Journal of Biomedical Informatics, 44(5), 859–868.
    • (2011) Journal of Biomedical Informatics , vol.44 , Issue.5 , pp. 859-868
    • Zhao, D.1    Weng, C.2
  • 35
    • 84930749196 scopus 로고    scopus 로고
    • Supporting information retrieval from electronic health records: a report of University of Michigan’s nine-year experience in developing and using the Electronic Medical Record Search Engine (EMERSE)
    • PID: 25979153
    • Hanauer, D. A., Mei, Q., Law, J., Khanna, R., & Zheng, K. (2015). Supporting information retrieval from electronic health records: a report of University of Michigan’s nine-year experience in developing and using the Electronic Medical Record Search Engine (EMERSE). Journal of Biomedical Informatics, 55, 290–300.
    • (2015) Journal of Biomedical Informatics , vol.55 , pp. 290-300
    • Hanauer, D.A.1    Mei, Q.2    Law, J.3    Khanna, R.4    Zheng, K.5
  • 36
    • 84928096517 scopus 로고    scopus 로고
    • Advanced search of the electronic medical record: augmenting safety and efficiency in radiology
    • PID: 20678732
    • Zalis, M., & Harris, M. (2010). Advanced search of the electronic medical record: augmenting safety and efficiency in radiology. Journal of the American College of Radiology, 7(8), 625–633.
    • (2010) Journal of the American College of Radiology , vol.7 , Issue.8 , pp. 625-633
    • Zalis, M.1    Harris, M.2
  • 41
    • 84906264711 scopus 로고    scopus 로고
    • Employing computers for the recruitment into clinical trials: a comprehensive systematic review
    • PID: 24985568
    • Kopcke, F., & Prokosch, H. U. (2014). Employing computers for the recruitment into clinical trials: a comprehensive systematic review. Journal of Medical Internet Research, 16(7), e161.
    • (2014) Journal of Medical Internet Research , vol.16 , Issue.7
    • Kopcke, F.1    Prokosch, H.U.2
  • 42
    • 84929334937 scopus 로고    scopus 로고
    • Automated clinical trial eligibility prescreening: increasing the efficiency of patient identification for clinical trials in the emergency department
    • PID: 25030032
    • Ni, Y., Kennebeck, S., Dexheimer, J. W., McAneney, C. M., Tang, H., Lingren, T., et al. (2015). Automated clinical trial eligibility prescreening: increasing the efficiency of patient identification for clinical trials in the emergency department. Journal of the American Medical Informatics Association, 22(1), 166–178.
    • (2015) Journal of the American Medical Informatics Association , vol.22 , Issue.1 , pp. 166-178
    • Ni, Y.1    Kennebeck, S.2    Dexheimer, J.W.3    McAneney, C.M.4    Tang, H.5    Lingren, T.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.