-
1
-
-
0344950089
-
Primary structure of a cytochrome P-450: coding nucleotide sequence of phenobarbital-inducible cytochrome P-450 cDNA from rat liver
-
(PMID: 6953431; PMCID: PMC346292)
-
Fujii-Kuriyama, Y., Mizukami, Y., Kawajiri, K., Sogawa, K., Muramatsu, M., Primary structure of a cytochrome P-450: coding nucleotide sequence of phenobarbital-inducible cytochrome P-450 cDNA from rat liver. Proc. Natl. Acad. Sci. U. S. A. 79 (1982), 2793–2797 (PMID: 6953431; PMCID: PMC346292).
-
(1982)
Proc. Natl. Acad. Sci. U. S. A.
, vol.79
, pp. 2793-2797
-
-
Fujii-Kuriyama, Y.1
Mizukami, Y.2
Kawajiri, K.3
Sogawa, K.4
Muramatsu, M.5
-
2
-
-
0020374942
-
Phenobarbital-induced rat liver cytochrome P-450. Purification and characterization of two closely related isozymic forms
-
(PMID: 6809749)
-
Waxman, D.J., Walsh, C., Phenobarbital-induced rat liver cytochrome P-450. Purification and characterization of two closely related isozymic forms. J. Biol. Chem. 257 (1982), 10446–10457 (PMID: 6809749).
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 10446-10457
-
-
Waxman, D.J.1
Walsh, C.2
-
3
-
-
0018292380
-
Amino acid compositions and partial amino acid sequences of three highly purified forms of liver microsomal cytochrome P-450 from rats treated with polychlorinated biphenyls, phenobarbital, or 3-methylcholanthrene
-
(PMID: 109438)
-
Botelho, L.H., Ryan, D.E., Levin, W., Amino acid compositions and partial amino acid sequences of three highly purified forms of liver microsomal cytochrome P-450 from rats treated with polychlorinated biphenyls, phenobarbital, or 3-methylcholanthrene. J. Biol. Chem. 254 (1979), 5635–5640 (PMID: 109438).
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 5635-5640
-
-
Botelho, L.H.1
Ryan, D.E.2
Levin, W.3
-
4
-
-
0019888658
-
Amino acid sequence of an analogous peptide from two forms of cytochrome P-450
-
(PMID: 7298609)
-
Ozols, J., Heinemann, F.S., Johnson, E.F., Amino acid sequence of an analogous peptide from two forms of cytochrome P-450. J. Biol. Chem. 256 (1981), 11405–11408 (PMID: 7298609).
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 11405-11408
-
-
Ozols, J.1
Heinemann, F.S.2
Johnson, E.F.3
-
5
-
-
73249132581
-
The cytochrome P450 homepage
-
(PMID: 19951895, PMCID: PMC3500189)
-
Nelson, D.R., The cytochrome P450 homepage. Hum. Genet. 4 (2009), 59–65, 10.1186/1479–7364–4-1-59 (PMID: 19951895, PMCID: PMC3500189).
-
(2009)
Hum. Genet.
, vol.4
, pp. 59-65
-
-
Nelson, D.R.1
-
6
-
-
84909590553
-
Data access for the 1,000 plants (1KP) project
-
(PMID: 25625010; PMCID: PMC4306014)
-
Matasci, N., Hung, L.H., Yan, Z., Carpenter, E.J., Wickett, N.J., Mirarab, S., Nguyen, N., Warnow, T., Ayyampalayam, S., Barker, M., Burleigh, J.G., Gitzendanner, M.A., Wafula, E., Der, J.P., de Pamphilis, C.W., Roure, B., Philippe, H., Ruhfel, B.R., Miles, N.W., Graham, S.W., Mathews, S., Surek, B., Melkonian, M., Soltis, D.E., Soltis, P.S., Rothfels, C., Pokorny, L., Shaw, J.A., DeGironimo, L., Stevenson, D.W., Villarreal, J.C., Chen, T., Kutchan, T.M., Rolf, M., Baucom, R.S., Deyholos, M.K., Samudrala, R., Tian, Z., Wu, X., Sun, X., Zhang, Y., Wang, J., Leebens-Mack, J., Wong, G.K., Data access for the 1,000 plants (1KP) project. Gigascience, 3, 2014 Oct 27, 17, 10.1186/2047-217X-3-17 (PMID: 25625010; PMCID: PMC4306014).
-
(2014)
Gigascience
, vol.3
, pp. 17
-
-
Matasci, N.1
Hung, L.H.2
Yan, Z.3
Carpenter, E.J.4
Wickett, N.J.5
Mirarab, S.6
Nguyen, N.7
Warnow, T.8
Ayyampalayam, S.9
Barker, M.10
Burleigh, J.G.11
Gitzendanner, M.A.12
Wafula, E.13
Der, J.P.14
de Pamphilis, C.W.15
Roure, B.16
Philippe, H.17
Ruhfel, B.R.18
Miles, N.W.19
Graham, S.W.20
Mathews, S.21
Surek, B.22
Melkonian, M.23
Soltis, D.E.24
Soltis, P.S.25
Rothfels, C.26
Pokorny, L.27
Shaw, J.A.28
DeGironimo, L.29
Stevenson, D.W.30
Villarreal, J.C.31
Chen, T.32
Kutchan, T.M.33
Rolf, M.34
Baucom, R.S.35
Deyholos, M.K.36
Samudrala, R.37
Tian, Z.38
Wu, X.39
Sun, X.40
Zhang, Y.41
Wang, J.42
Leebens-Mack, J.43
Wong, G.K.44
more..
-
7
-
-
84909619344
-
Phylotranscriptomic analysis of the origin and early diversification of land plants
-
(doi: 10.1073/pnas.1323926111. PMID: 25355905; PMCID: PMC4234587)
-
Wickett, N.J., Mirarab, S., Nguyen, N., Warnow, T., Carpenter, E., Matasci, N., Ayyampalayam, S., Barker, M.S., Burleigh, J.G., Gitzendanner, M.A., Ruhfel, B.R., Wafula, E., Der, J.P., Graham, S.W., Mathews, S., Melkonian, M., Soltis, D.E., Soltis, P.S., Miles, N.W., Rothfels, C.J., Pokorny, L., Shaw, A.J., DeGironimo, L., Stevenson, D.W., Surek, B., Villarreal, J.C., Roure, B., Philippe, H., de Pamphilis, C.W., Chen, T., Deyholos, M.K., Baucom, R.S., Kutchan, T.M., Augustin, M.M., Wang, J., Zhang, Y., Tian, Z., Yan, Z., Wu, X., Sun, X., Wong, G.K., Leebens-Mack, J., Phylotranscriptomic analysis of the origin and early diversification of land plants. Proc. Natl. Acad. Sci. U. S. A. 111 (2014), E4859–E4868 (doi: 10.1073/pnas.1323926111. PMID: 25355905; PMCID: PMC4234587).
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. E4859-E4868
-
-
Wickett, N.J.1
Mirarab, S.2
Nguyen, N.3
Warnow, T.4
Carpenter, E.5
Matasci, N.6
Ayyampalayam, S.7
Barker, M.S.8
Burleigh, J.G.9
Gitzendanner, M.A.10
Ruhfel, B.R.11
Wafula, E.12
Der, J.P.13
Graham, S.W.14
Mathews, S.15
Melkonian, M.16
Soltis, D.E.17
Soltis, P.S.18
Miles, N.W.19
Rothfels, C.J.20
Pokorny, L.21
Shaw, A.J.22
DeGironimo, L.23
Stevenson, D.W.24
Surek, B.25
Villarreal, J.C.26
Roure, B.27
Philippe, H.28
de Pamphilis, C.W.29
Chen, T.30
Deyholos, M.K.31
Baucom, R.S.32
Kutchan, T.M.33
Augustin, M.M.34
Wang, J.35
Zhang, Y.36
Tian, Z.37
Yan, Z.38
Wu, X.39
Sun, X.40
Wong, G.K.41
Leebens-Mack, J.42
more..
-
8
-
-
84902474663
-
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
-
(PMID: 24532719)
-
Xie, Y., Wu, G.J., Tang, R., Luo, J., Patterson, S., Liu, W., Huang, G., He, S., Gu, S., Li, S., Zhou, X., Lam, T.W., Li, Y., Xu, X., Wong, G.K., Wang, J., SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. Bioinformatics Dept. of Microbiology, Immunology and Biochemistry, 2014, 1660–1666, 10.1093/bioinformatics/btu077 (PMID: 24532719).
-
(2014)
Bioinformatics Dept. of Microbiology, Immunology and Biochemistry
, pp. 1660-1666
-
-
Xie, Y.1
Wu, G.J.2
Tang, R.3
Luo, J.4
Patterson, S.5
Liu, W.6
Huang, G.7
He, S.8
Gu, S.9
Li, S.10
Zhou, X.11
Lam, T.W.12
Li, Y.13
Xu, X.14
Wong, G.K.15
Wang, J.16
-
9
-
-
84869751747
-
Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes
-
(PMID: 23185583, PMCID: PMC3504007)
-
Johnson, M.T., Carpenter, E.J., Tian, Z., Bruskiewich, R., Burris, J.N., Carrigan, C.T., Chase, M.W., Clarke, N.D., Covshoff, S., de Pamphilis, C.W., Wong, G.K., Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One, 7, Nov 2012, e50226, 10.1371/journal.pone.0050226 (PMID: 23185583, PMCID: PMC3504007).
-
(2012)
PLoS One
, vol.7
-
-
Johnson, M.T.1
Carpenter, E.J.2
Tian, Z.3
Bruskiewich, R.4
Burris, J.N.5
Carrigan, C.T.6
Chase, M.W.7
Clarke, N.D.8
Covshoff, S.9
de Pamphilis, C.W.10
Wong, G.K.11
-
10
-
-
84891752209
-
MycoCosm portal: gearing up for 1000 fungal genomes
-
(PMID: 24297253 PMCID: PMC3965089)
-
Grigoriev, I.V., Nikitin, R., Haridas, S., Kuo, A., Ohm, R., Otillar, R., Riley, R., Salamov, A., Zhao, X., Korzeniewski, F., Smirnova, T., Nordberg, H., Dubchak, I., Shabalov, I., MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Res. 42 (2014), D699–D704, 10.1093/nar/gkt1183 (PMID: 24297253 PMCID: PMC3965089).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D699-D704
-
-
Grigoriev, I.V.1
Nikitin, R.2
Haridas, S.3
Kuo, A.4
Ohm, R.5
Otillar, R.6
Riley, R.7
Salamov, A.8
Zhao, X.9
Korzeniewski, F.10
Smirnova, T.11
Nordberg, H.12
Dubchak, I.13
Shabalov, I.14
-
11
-
-
85033548678
-
-
(accessed March 21).
-
http://genome.jgi.doe.gov/programs/fungi/index.jsf (accessed March 21, 2017).
-
(2017)
-
-
-
12
-
-
84937523803
-
It's more than stamp collecting: how genome sequencing can unify biological research
-
(PMID: 26003218 PMCID: PMC4490122)
-
Richards, S., It's more than stamp collecting: how genome sequencing can unify biological research. Trends Genet. 31 (2015), 411–421, 10.1016/j.tig.2015.04.007 (PMID: 26003218 PMCID: PMC4490122).
-
(2015)
Trends Genet.
, vol.31
, pp. 411-421
-
-
Richards, S.1
-
13
-
-
0003690502
-
Five Kingdoms. An Illustrated Guide to the Phyla of Life on Earth
-
third ed. W.H. Freeman New York
-
Margulis, L., Schwartz, K.V., Five Kingdoms. An Illustrated Guide to the Phyla of Life on Earth. third ed., 1998, W.H. Freeman, New York.
-
(1998)
-
-
Margulis, L.1
Schwartz, K.V.2
-
14
-
-
84965144516
-
No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini
-
Koutsovoulos, G., Kumar, S., Laetsch, D.R., Stevens, L., Daub, J., Conlon, C., Maroon, H., Thomas, F., Aboobaker, A.A., Blaxter, M., No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini. Proc. Natl. Acad. Sci. U. S. A. 113 (2016), 5053–5058.
-
(2016)
Proc. Natl. Acad. Sci. U. S. A.
, vol.113
, pp. 5053-5058
-
-
Koutsovoulos, G.1
Kumar, S.2
Laetsch, D.R.3
Stevens, L.4
Daub, J.5
Conlon, C.6
Maroon, H.7
Thomas, F.8
Aboobaker, A.A.9
Blaxter, M.10
-
15
-
-
84890829647
-
The Amborella genome and the evolution of flowering plants
-
(PMID: 24357323)
-
Amborella Genome Project, The Amborella genome and the evolution of flowering plants. Science, 342, 2013, 1241089, 10.1126/science.1241089 (PMID: 24357323).
-
(2013)
Science
, vol.342
-
-
Amborella Genome Project1
-
16
-
-
85033547732
-
-
https://pods.iplantcollaborative.org/wiki/display/iptol/Access+to+OneKP+data+set.
-
-
-
-
17
-
-
84917708482
-
Whole-genome analyses resolve early branches in the tree of life of modern birds
-
(PMID: 25504713; PMCID: PMC4405904)
-
Jarvis, E.D., Mirarab, S., Aberer, A.J., Li, B., Houde, P., Li, C., Ho, S.Y., Faircloth, B.C., Nabholz, B., Howard, J.T., Suh, A., Weber, C.C., da Fonseca, R.R., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G., Boussau, B., Bayzid, M.S., Zavidovych, V., Subramanian, S., Gabaldón, T., Capella-Gutiérrez, S., Huerta-Cepas, J., Rekepalli, B., Munch, K., Schierup, M., Lindow, B., Warren, W.C., Ray, D., Green, R.E., Bruford, M.W., Zhan, X., Dixon, A., Li, S., Li, N., Huang, Y., Derryberry, E.P., Bertelsen, M.F., Sheldon, F.H., Brumfield, R.T., Mello, C.V., Lovell, P.V., Wirthlin, M., Schneider, M.P., Prosdocimi, F., Samaniego, J.A., Vargas Velazquez, A.M., Alfaro-Núñez, A., Campos, P.F., Petersen, B., Sicheritz-Ponten, T., Pas, A., Bailey, T., Scofield, P., Bunce, M., Lambert, D.M., Zhou, Q., Perelman, P., Driskell, A.C., Shapiro, B., Xiong, Z., Zeng, Y., Liu, S., Li, Z., Liu, B., Wu, K., Xiao, J., Yinqi, X., Zheng, Q., Zhang, Y., Yang, H., Wang, J., Smeds, L., Rheindt, F.E., Braun, M., Fjeldsa, J., Orlando, L., Barker, F.K., Jønsson, K.A., Johnson, W., Koepfli, K.P., O'Brien, S., Haussler, D., Ryder, O.A., Rahbek, C., Willerslev, E., Graves, G.R., Glenn, T.C., McCormack, J., Burt, D., Ellegren, H., Alström, P., Edwards, S.V., Stamatakis, A., Mindell, D.P., Cracraft, J., Braun, E.L., Warnow, T., Jun, W., Gilbert, M.T., Zhang, G., Whole-genome analyses resolve early branches in the tree of life of modern birds. Science 346 (2014), 1320–1331, 10.1126/science.1253451 (PMID: 25504713; PMCID: PMC4405904).
-
(2014)
Science
, vol.346
, pp. 1320-1331
-
-
Jarvis, E.D.1
Mirarab, S.2
Aberer, A.J.3
Li, B.4
Houde, P.5
Li, C.6
Ho, S.Y.7
Faircloth, B.C.8
Nabholz, B.9
Howard, J.T.10
Suh, A.11
Weber, C.C.12
da Fonseca, R.R.13
Li, J.14
Zhang, F.15
Li, H.16
Zhou, L.17
Narula, N.18
Liu, L.19
Ganapathy, G.20
Boussau, B.21
Bayzid, M.S.22
Zavidovych, V.23
Subramanian, S.24
Gabaldón, T.25
Capella-Gutiérrez, S.26
Huerta-Cepas, J.27
Rekepalli, B.28
Munch, K.29
Schierup, M.30
Lindow, B.31
Warren, W.C.32
Ray, D.33
Green, R.E.34
Bruford, M.W.35
Zhan, X.36
Dixon, A.37
Li, S.38
Li, N.39
Huang, Y.40
Derryberry, E.P.41
Bertelsen, M.F.42
Sheldon, F.H.43
Brumfield, R.T.44
Mello, C.V.45
Lovell, P.V.46
Wirthlin, M.47
Schneider, M.P.48
Prosdocimi, F.49
Samaniego, J.A.50
Vargas Velazquez, A.M.51
Alfaro-Núñez, A.52
Campos, P.F.53
Petersen, B.54
Sicheritz-Ponten, T.55
Pas, A.56
Bailey, T.57
Scofield, P.58
Bunce, M.59
Lambert, D.M.60
Zhou, Q.61
Perelman, P.62
Driskell, A.C.63
Shapiro, B.64
Xiong, Z.65
Zeng, Y.66
Liu, S.67
Li, Z.68
Liu, B.69
Wu, K.70
Xiao, J.71
Yinqi, X.72
Zheng, Q.73
Zhang, Y.74
Yang, H.75
Wang, J.76
Smeds, L.77
Rheindt, F.E.78
Braun, M.79
Fjeldsa, J.80
Orlando, L.81
Barker, F.K.82
Jønsson, K.A.83
Johnson, W.84
Koepfli, K.P.85
O'Brien, S.86
Haussler, D.87
Ryder, O.A.88
Rahbek, C.89
Willerslev, E.90
Graves, G.R.91
Glenn, T.C.92
McCormack, J.93
Burt, D.94
Ellegren, H.95
Alström, P.96
Edwards, S.V.97
Stamatakis, A.98
Mindell, D.P.99
Cracraft, J.100
Braun, E.L.101
Warnow, T.102
Jun, W.103
Gilbert, M.T.104
Zhang, G.105
more..
-
18
-
-
84944911288
-
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
-
(PMID: 26444237)
-
Prum, R.O., Berv, J.S., Dornburg, A., Field, D.J., Townsend, J.P., Lemmon, E.M., Lemmon, A.R., A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing. Nature 526 (2015), 569–573, 10.1038/nature15697 (PMID: 26444237).
-
(2015)
Nature
, vol.526
, pp. 569-573
-
-
Prum, R.O.1
Berv, J.S.2
Dornburg, A.3
Field, D.J.4
Townsend, J.P.5
Lemmon, E.M.6
Lemmon, A.R.7
-
19
-
-
85033548934
-
-
http://www.sciencemag.org/news/2017/02/biologists-propose-sequence-dna-all-life-earth.
-
-
-
-
20
-
-
84975510402
-
Red carotenoid coloration in the zebra finch is controlled by a cytochrome P450 gene cluster
-
(PMID: 27212402)
-
Mundy, N.I., Stapley, J., Bennison, C., Tucker, R., Twyman, H., Kim, K.W., Burke, T., Birkhead, T.R., Andersson, S., Slate, J., Red carotenoid coloration in the zebra finch is controlled by a cytochrome P450 gene cluster. Curr. Biol. 26 (2016), 1435–1440, 10.1016/j.cub.2016.04.047 (PMID: 27212402).
-
(2016)
Curr. Biol.
, vol.26
, pp. 1435-1440
-
-
Mundy, N.I.1
Stapley, J.2
Bennison, C.3
Tucker, R.4
Twyman, H.5
Kim, K.W.6
Burke, T.7
Birkhead, T.R.8
Andersson, S.9
Slate, J.10
-
21
-
-
84975462338
-
Genetic basis for red coloration in birds
-
(PMID: 27212400; PMCID: PMC5125026)
-
Lopes, R.J., Johnson, J.D., Toomey, M.B., Ferreira, M.S., Araujo, P.M., Melo-Ferreira, J., Andersson, L., Hill, G.E., Corbo, J.C., Carneiro, M., Genetic basis for red coloration in birds. Curr. Biol. 26 (2016), 1427–1434, 10.1016/j.cub.2016.03.076 (PMID: 27212400; PMCID: PMC5125026).
-
(2016)
Curr. Biol.
, vol.26
, pp. 1427-1434
-
-
Lopes, R.J.1
Johnson, J.D.2
Toomey, M.B.3
Ferreira, M.S.4
Araujo, P.M.5
Melo-Ferreira, J.6
Andersson, L.7
Hill, G.E.8
Corbo, J.C.9
Carneiro, M.10
-
22
-
-
84982293152
-
Seeing red to being red: conserved genetic mechanism for red cone oil droplets and co-option for red coloration in birds and turtles
-
pii: 20161208 (PMID: 27488652; PMCID: PMC5013772)
-
Twyman, H., Valenzuela, N., Literman, R., Andersson, S., Mundy, N.I., Seeing red to being red: conserved genetic mechanism for red cone oil droplets and co-option for red coloration in birds and turtles. Proc. Biol. Sci., 283(1836), 2016 pii: 20161208 10.1098/rspb.2016.1208 (PMID: 27488652; PMCID: PMC5013772).
-
(2016)
Proc. Biol. Sci.
, vol.283
, Issue.1836
-
-
Twyman, H.1
Valenzuela, N.2
Literman, R.3
Andersson, S.4
Mundy, N.I.5
-
23
-
-
0019566533
-
Lack of prostacyclin biosynthesis by aortic tissue of the chicken
-
(PMID: 6803304)
-
Claeys, M., Wechsung, E., Herman, A.G., Nugteren, D.H., Lack of prostacyclin biosynthesis by aortic tissue of the chicken. Prostaglandins 1981:21 (1981), 739–749 (PMID: 6803304).
-
(1981)
Prostaglandins
, vol.1981
, Issue.21
, pp. 739-749
-
-
Claeys, M.1
Wechsung, E.2
Herman, A.G.3
Nugteren, D.H.4
-
24
-
-
0019828291
-
Prostanoids and hemostasis in chickens: anti-aggregating activity of prostaglandins E1 and E2, but not of prostacyclin and prostaglandin D2
-
(PMID: 7027319)
-
Bult, H., Wechsung, E., Houvenaghel, A., Herman, A.G., Prostanoids and hemostasis in chickens: anti-aggregating activity of prostaglandins E1 and E2, but not of prostacyclin and prostaglandin D2. Prostaglandins 21 (1981), 1045–1058 (PMID: 7027319).
-
(1981)
Prostaglandins
, vol.21
, pp. 1045-1058
-
-
Bult, H.1
Wechsung, E.2
Houvenaghel, A.3
Herman, A.G.4
-
25
-
-
37349003762
-
Adrenal steroid metabolism in birds: anatomy, physiology, and clinical considerations
-
vi (PMID: 18165137)
-
de Matos, R., Adrenal steroid metabolism in birds: anatomy, physiology, and clinical considerations. Vet. Clin. North Am. Exot. Anim. Pract. 11 (2008), 35–57 vi 10.1016/j.cvex.2007.09.006 (PMID: 18165137).
-
(2008)
Vet. Clin. North Am. Exot. Anim. Pract.
, vol.11
, pp. 35-57
-
-
de Matos, R.1
-
26
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
(PMID: 10731132)
-
Adams, M.D., Celniker, S.E., Holt, R.A., Evans, C.A., Gocayne, J.D., Amanatides, P.G., Scherer, S.E., Li, P.W., Hoskins, R.A., Galle, R.F. et al., The genome sequence of Drosophila melanogaster. Science 287 (2000), 2185–2195, 10.1126/science.287.5461.2185 (PMID: 10731132).
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
-
27
-
-
84931383681
-
Horseshoe Crabs and Velvet Worms: The Story of the Animals and Plants That Time has Left Behind
-
Alfred A. Knopf
-
Fortey, R., Horseshoe Crabs and Velvet Worms: The Story of the Animals and Plants That Time has Left Behind. 2012, Alfred A. Knopf.
-
(2012)
-
-
Fortey, R.1
-
28
-
-
37749009916
-
A Cambrian micro-lobopodian and the evolution of arthropod locomotion and reproduction
-
Maas, A., Mayer, G., Kristensen, R.M., Waloszek, D., A Cambrian micro-lobopodian and the evolution of arthropod locomotion and reproduction. Chin. Sci. Bull. 52 (2007), 3385–3392.
-
(2007)
Chin. Sci. Bull.
, vol.52
, pp. 3385-3392
-
-
Maas, A.1
Mayer, G.2
Kristensen, R.M.3
Waloszek, D.4
-
29
-
-
84867760559
-
Opsins in onychophora (velvet worms) suggest a single origin and subsequent diversification of visual pigments in arthropods
-
(PMID: 22683812)
-
Hering, L., Henze, M.J., Kohler, M., Kelber, A., Bleidorn, C., Leschke, M., Nickel, B., Meyer, M., Kircher, M., Sunnucks, P., Mayer, G., Opsins in onychophora (velvet worms) suggest a single origin and subsequent diversification of visual pigments in arthropods. Mol. Biol. Evol. 29 (2012), 3451–3458, 10.1093/molbev/mss148 (PMID: 22683812).
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 3451-3458
-
-
Hering, L.1
Henze, M.J.2
Kohler, M.3
Kelber, A.4
Bleidorn, C.5
Leschke, M.6
Nickel, B.7
Meyer, M.8
Kircher, M.9
Sunnucks, P.10
Mayer, G.11
-
30
-
-
84925005930
-
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
-
(Epub 2015 Feb 23)
-
Kohler, A., Kuo, A., Nagy, L.G., Morin, E., Barry, K.W., Buscot, F., Canback, B., Choi, C., Cichocki, N., Clum, A., Colpaert, J., Copeland, A., Costa, M.D., Dore, J., Floudas, D., Gay, G., Girlanda, M., Henrissat, B., Herrmann, S., Hess, J., Hogberg, N., Johansson, T., Khouja, H.R., LaButti, K., Lahrmann, U., Levasseur, A., Lindquist, E.A., Lipzen, A., Marmeisse, R., Martino, E., Murat, C., Ngan, C.Y., Nehls, U., Plett, J.M., Pringle, A., Ohm, R.A., Perotto, S., Peter, M., Riley, R., Rineau, F., Ruytinx, J., Salamov, A., Shah, F., Sun, H., Tarkka, M., Tritt, A., Veneault-Fourrey, C., Zuccaro, A., Tunlid, A., Grigoriev, I.V., Hibbett, D.S., Martin, F., Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nat. Genet. 47 (2015), 410–415, 10.1038/ng.3223 (Epub 2015 Feb 23).
-
(2015)
Nat. Genet.
, vol.47
, pp. 410-415
-
-
Kohler, A.1
Kuo, A.2
Nagy, L.G.3
Morin, E.4
Barry, K.W.5
Buscot, F.6
Canback, B.7
Choi, C.8
Cichocki, N.9
Clum, A.10
Colpaert, J.11
Copeland, A.12
Costa, M.D.13
Dore, J.14
Floudas, D.15
Gay, G.16
Girlanda, M.17
Henrissat, B.18
Herrmann, S.19
Hess, J.20
Hogberg, N.21
Johansson, T.22
Khouja, H.R.23
LaButti, K.24
Lahrmann, U.25
Levasseur, A.26
Lindquist, E.A.27
Lipzen, A.28
Marmeisse, R.29
Martino, E.30
Murat, C.31
Ngan, C.Y.32
Nehls, U.33
Plett, J.M.34
Pringle, A.35
Ohm, R.A.36
Perotto, S.37
Peter, M.38
Riley, R.39
Rineau, F.40
Ruytinx, J.41
Salamov, A.42
Shah, F.43
Sun, H.44
Tarkka, M.45
Tritt, A.46
Veneault-Fourrey, C.47
Zuccaro, A.48
Tunlid, A.49
Grigoriev, I.V.50
Hibbett, D.S.51
Martin, F.52
more..
-
31
-
-
35548931140
-
Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina
-
Arvas, M., Kivioja, T., Mitchell, A., Saloheimo, M., Ussery, D., Penttila, M., Oliver, S., Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina. BMC Genomics, 8, 2007, 325, 10.1186/1471–2164–8-325.
-
(2007)
BMC Genomics
, vol.8
, pp. 325
-
-
Arvas, M.1
Kivioja, T.2
Mitchell, A.3
Saloheimo, M.4
Ussery, D.5
Penttila, M.6
Oliver, S.7
-
32
-
-
33947286723
-
The evolutionary history of cytochrome P450 genes in four filamentous Ascomycetes
-
(PMID: 17324274; PMCID: PMC1828051)
-
Deng, J., Carbone, I., Dean, R.A., The evolutionary history of cytochrome P450 genes in four filamentous Ascomycetes. BMC Evol. Biol., 7, 2007 Feb 26, 30 (PMID: 17324274; PMCID: PMC1828051).
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 30
-
-
Deng, J.1
Carbone, I.2
Dean, R.A.3
-
33
-
-
84866948231
-
Systematic and searchable classification of cytochrome P450 proteins encoded by fungal and oomycete genomes
-
(PMID: 23033934; PMCID: PMC3505482)
-
Moktali, V., Park, J., Fedorova-Abrams, N.D., Park, B., Choi, J., Lee, Y.H., Kang, S., Systematic and searchable classification of cytochrome P450 proteins encoded by fungal and oomycete genomes. BMC Genomics, 13, 2012 Oct 4, 525, 10.1186/1471–2164–13-525 (PMID: 23033934; PMCID: PMC3505482).
-
(2012)
BMC Genomics
, vol.13
, pp. 525
-
-
Moktali, V.1
Park, J.2
Fedorova-Abrams, N.D.3
Park, B.4
Choi, J.5
Lee, Y.H.6
Kang, S.7
-
34
-
-
79953234390
-
A P450-centric view of plant evolution
-
(PMID: 21443632)
-
Nelson, D., Werck-Reichhart, D., A P450-centric view of plant evolution. Plant J. 66 (2011), 194–211, 10.1111/j.1365-313X.2011.04529.x (PMID: 21443632).
-
(2011)
Plant J.
, vol.66
, pp. 194-211
-
-
Nelson, D.1
Werck-Reichhart, D.2
-
35
-
-
85033546515
-
-
(Accessed March 21).
-
https://genome10k.soe.ucsc.edu/news/article/27 (Accessed March 21, 2017).
-
(2017)
-
-
-
36
-
-
0023598348
-
Evolution of cytochrome P-450 proteins
-
(PMID: 3484338)
-
Nelson, D.R., Strobel, H.W., Evolution of cytochrome P-450 proteins. Mol. Biol. Evol. 4 (1987), 572–593 (PMID: 3484338).
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 572-593
-
-
Nelson, D.R.1
Strobel, H.W.2
-
37
-
-
0031795556
-
Metazoan cytochrome P450 evolution
-
(PMID: 9972448)
-
Nelson, D.R., Metazoan cytochrome P450 evolution. Comp. Biochem. Physiol. C 121 (1998), 15–22 (PMID: 9972448).
-
(1998)
Comp. Biochem. Physiol. C
, vol.121
, pp. 15-22
-
-
Nelson, D.R.1
-
38
-
-
0033199227
-
Cytochrome P450 and the individuality of species
-
(PMID: 10462435)
-
Nelson, D.R., Cytochrome P450 and the individuality of species. Arch. Biochem. Biophys. 369 (1999), 1–10, 10.1006/abbi.1999.1352 (PMID: 10462435).
-
(1999)
Arch. Biochem. Biophys.
, vol.369
, pp. 1-10
-
-
Nelson, D.R.1
-
39
-
-
84880172037
-
The cytochrome P450 genesis locus and the origin of animal cytochrome P450s
-
(PMID: 23297357)
-
Nelson, D.R., Goldstone, J.V., Stegeman, J.J., The cytochrome P450 genesis locus and the origin of animal cytochrome P450s. Philos. Trans. R. Soc. B, 368, 2012, 20120474, 10.1098/rstb.2012.0474 (PMID: 23297357).
-
(2012)
Philos. Trans. R. Soc. B
, vol.368
-
-
Nelson, D.R.1
Goldstone, J.V.2
Stegeman, J.J.3
-
40
-
-
52149110322
-
Structural insights into the evolutionary paths of oxylipin biosynthetic enzymes
-
(PMID: 18716621)
-
Lee, D.S., Nioche, P., Hamberg, M., Raman, C.S., Structural insights into the evolutionary paths of oxylipin biosynthetic enzymes. Nature 455 (2008), 363–368, 10.1038/nature07307 (PMID: 18716621).
-
(2008)
Nature
, vol.455
, pp. 363-368
-
-
Lee, D.S.1
Nioche, P.2
Hamberg, M.3
Raman, C.S.4
-
41
-
-
33845431616
-
Plant cytochrome P450s from moss to poplar
-
Nelson, D.R., Plant cytochrome P450s from moss to poplar. Phytochem. Rev. 5 (2006), 193–204, 10.1007/s11101-006-9015-3.
-
(2006)
Phytochem. Rev.
, vol.5
, pp. 193-204
-
-
Nelson, D.R.1
-
42
-
-
84934783044
-
Diversity and evolution of cytochrome P450 monooxygenases in Oomycetes
-
(PMID: 26129850; PMCID: PMC4486971)
-
Sello, M.M., Jafta, N., Nelson, D.R., Chen, W., Yu, J.H., Parvez, M., Kgosiemang, I.K., Monyaki, R., Raselemane, S.C., Qhanya, L.B., Mthakathi, N.T., Sitheni Mashele, S., Syed, K., Diversity and evolution of cytochrome P450 monooxygenases in Oomycetes. Sci. Rep., 5, 2015 Jul 1, 11572, 10.1038/srep11572 (PMID: 26129850; PMCID: PMC4486971).
-
(2015)
Sci. Rep.
, vol.5
, pp. 11572
-
-
Sello, M.M.1
Jafta, N.2
Nelson, D.R.3
Chen, W.4
Yu, J.H.5
Parvez, M.6
Kgosiemang, I.K.7
Monyaki, R.8
Raselemane, S.C.9
Qhanya, L.B.10
Mthakathi, N.T.11
Sitheni Mashele, S.12
Syed, K.13
-
43
-
-
84995421832
-
Phylogenetic resolution of deep eukaryotic and fungal relationships using highly conserved low-copy nuclear genes
-
(PMID: 27604879)
-
Ren, R., Sun, Y., Zhao, Y., Geiser, D., Ma, H., Zhou, X., Phylogenetic resolution of deep eukaryotic and fungal relationships using highly conserved low-copy nuclear genes. Genome Biol. Evol. 8 (2016), 2683–2701, 10.1093/gbe/evw196 (PMID: 27604879).
-
(2016)
Genome Biol. Evol.
, vol.8
, pp. 2683-2701
-
-
Ren, R.1
Sun, Y.2
Zhao, Y.3
Geiser, D.4
Ma, H.5
Zhou, X.6
-
44
-
-
84955615557
-
Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista
-
pii: 20152802 (PMID: 26817772; PMCID: PMC4795036)
-
Burki, F., Kaplan, M., Tikhonenkov, D.V., Zlatogursky, V., Minh, B.Q., Radaykina, L.V., Smirnov, A., Mylnikov, A.P., Keeling, P.J., Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista. Proc. Biol. Sci., 283(1823), 2016 Jan 27 pii: 20152802 10.1098/rspb.2015.2802 (PMID: 26817772; PMCID: PMC4795036).
-
(2016)
Proc. Biol. Sci.
, vol.283
, Issue.1823
-
-
Burki, F.1
Kaplan, M.2
Tikhonenkov, D.V.3
Zlatogursky, V.4
Minh, B.Q.5
Radaykina, L.V.6
Smirnov, A.7
Mylnikov, A.P.8
Keeling, P.J.9
-
45
-
-
84929574274
-
Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites
-
(PMID: 25540455)
-
Katz, L.A., Grant, J.R., Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites. Syst. Biol. 64 (2015), 406–415, 10.1093/sysbio/syu126 (PMID: 25540455).
-
(2015)
Syst. Biol.
, vol.64
, pp. 406-415
-
-
Katz, L.A.1
Grant, J.R.2
-
46
-
-
84867310470
-
The revised classification of eukaryotes
-
(PMID: 23020233; PMCID: PMC3483872)
-
Adl, S.M., Simpson, A.G., Lane, C.E., Lukeš, J., Bass, D., Bowser, S.S., Brown, M.W., Burki, F., Dunthorn, M., Hampl, V., Heiss, A., Hoppenrath, M., Lara, E., Le Gall, L., Lynn, D.H., McManus, H., Mitchell, E.A., Mozley-Stanridge, S.E., Parfrey, L.W., Pawlowski, J., Rueckert, S., Shadwick, L., Schoch, C.L., Smirnov, A., Spiegel, F.W., The revised classification of eukaryotes. J. Eukaryot. Microbiol. 59 (2012), 429–493, 10.1111/j.1550–7408.2012.00644.x (PMID: 23020233; PMCID: PMC3483872).
-
(2012)
J. Eukaryot. Microbiol.
, vol.59
, pp. 429-493
-
-
Adl, S.M.1
Simpson, A.G.2
Lane, C.E.3
Lukeš, J.4
Bass, D.5
Bowser, S.S.6
Brown, M.W.7
Burki, F.8
Dunthorn, M.9
Hampl, V.10
Heiss, A.11
Hoppenrath, M.12
Lara, E.13
Le Gall, L.14
Lynn, D.H.15
McManus, H.16
Mitchell, E.A.17
Mozley-Stanridge, S.E.18
Parfrey, L.W.19
Pawlowski, J.20
Rueckert, S.21
Shadwick, L.22
Schoch, C.L.23
Smirnov, A.24
Spiegel, F.W.25
more..
-
47
-
-
84923163834
-
Bacterial proteins pinpoint a single eukaryotic root
-
(PMID: 25646484; PMCID: PMC4343179)
-
Derelle, R., Torruella, G., Klimeš, V., Brinkmann, H., Kim, E., Vlček, Č., Lang, B.F., Eliáš, M., Bacterial proteins pinpoint a single eukaryotic root. Proc. Natl. Acad. Sci. U. S. A. 112 (2015), E693–E699, 10.1073/pnas.1420657112 (PMID: 25646484; PMCID: PMC4343179).
-
(2015)
Proc. Natl. Acad. Sci. U. S. A.
, vol.112
, pp. E693-E699
-
-
Derelle, R.1
Torruella, G.2
Klimeš, V.3
Brinkmann, H.4
Kim, E.5
Vlček, Č.6
Lang, B.F.7
Eliáš, M.8
-
48
-
-
84955615557
-
Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista
-
(PMCID: PMC4795036)
-
Burki, F., Kaplan, M., Tikhonenkov, D.V., Zlatogursky, V., Minh, B.Q., Radaykina, L.V., Smirnov, A., Mylnikov, A.P., Keeling, P.J., Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista. Proc. Biol. Sci., 283, 2016, 20152802, 10.1098/rspb.2015.2802 (PMCID: PMC4795036).
-
(2016)
Proc. Biol. Sci.
, vol.283
-
-
Burki, F.1
Kaplan, M.2
Tikhonenkov, D.V.3
Zlatogursky, V.4
Minh, B.Q.5
Radaykina, L.V.6
Smirnov, A.7
Mylnikov, A.P.8
Keeling, P.J.9
-
49
-
-
78649445838
-
Arthropod CYPomes illustrate the tempo and mode in P450 evolution
-
(PMID: 20601227)
-
Feyereisen, R., Arthropod CYPomes illustrate the tempo and mode in P450 evolution. Biochim. Biophys. Acta 1814 (2011), 19–28, 10.1016/j.bbapap.2010.06.012 (PMID: 20601227).
-
(2011)
Biochim. Biophys. Acta
, vol.1814
, pp. 19-28
-
-
Feyereisen, R.1
-
50
-
-
84896734822
-
Incomplete sterols and hopanoids pathways in ciliates: gene loss and acquisition during evolution as a source of biosynthetic genes
-
(PMID: 24525200)
-
Tomazic, M.L., Poklepovich, T.J., Nudel, C.B., Nusblat, A.D., Incomplete sterols and hopanoids pathways in ciliates: gene loss and acquisition during evolution as a source of biosynthetic genes. Mol. Phylogenet. Evol. 74 (2014), 122–134, 10.1016/j.ympev.2014.01.026 (PMID: 24525200).
-
(2014)
Mol. Phylogenet. Evol.
, vol.74
, pp. 122-134
-
-
Tomazic, M.L.1
Poklepovich, T.J.2
Nudel, C.B.3
Nusblat, A.D.4
-
51
-
-
85033547522
-
-
Goldstone (mollusks) this issue.
-
Goldstone (mollusks) this issue.
-
-
-
-
52
-
-
84928745735
-
A higher level classification of all living organisms
-
eCollection 2015. Erratum in: PLoS One. 2015;10(6):e0130114. (PMID: 25923521; PMCID: PMC4418965)
-
Ruggiero, M.A., Gordon, D.P., Orrell, T.M., Bailly, N., Bourgoin, T., Brusca, R.C., Cavalier-Smith, T., Guiry, M.D., Kirk, P.M., A higher level classification of all living organisms. PLoS One, 10(4), 2015 Apr 29, e0119248, 10.1371/journal.pone.0119248 eCollection 2015. Erratum in: PLoS One. 2015;10(6):e0130114. (PMID: 25923521; PMCID: PMC4418965).
-
(2015)
PLoS One
, vol.10
, Issue.4
-
-
Ruggiero, M.A.1
Gordon, D.P.2
Orrell, T.M.3
Bailly, N.4
Bourgoin, T.5
Brusca, R.C.6
Cavalier-Smith, T.7
Guiry, M.D.8
Kirk, P.M.9
-
53
-
-
77955349439
-
Dating the molecular clock in fungi – how close are we?
-
Berbee, M.L., Taylor, J.W., Dating the molecular clock in fungi – how close are we?. Fungal Biol. Rev. 24 (2010), 1–16.
-
(2010)
Fungal Biol. Rev.
, vol.24
, pp. 1-16
-
-
Berbee, M.L.1
Taylor, J.W.2
|