메뉴 건너뛰기




Volumn 6, Issue 6, 2017, Pages 936-942

Quantitative Analysis of Synthetic Cell Lineage Tracing Using Nuclease Barcoding

Author keywords

CRISPR Cas9; DNA barcoding; lineage tracing

Indexed keywords

DNA; NUCLEASE; HELMINTH DNA;

EID: 85019143041     PISSN: None     EISSN: 21615063     Source Type: Journal    
DOI: 10.1021/acssynbio.6b00309     Document Type: Article
Times cited : (48)

References (44)
  • 1
    • 84856090845 scopus 로고    scopus 로고
    • Lineage Tracing
    • Kretzschmar, K. and Watt, F. M. (2012) Lineage Tracing Cell 148, 33-45 10.1016/j.cell.2012.01.002
    • (2012) Cell , vol.148 , pp. 33-45
    • Kretzschmar, K.1    Watt, F.M.2
  • 2
  • 3
    • 0017618537 scopus 로고
    • Post-embryonic cell lineages of the nematode, Caenorhabditis elegans
    • Sulston, J. E. and Horvitz, H. R. (1977) Post-embryonic cell lineages of the nematode, Caenorhabditis elegans Dev. Biol. 56, 110-156 10.1016/0012-1606(77)90158-0
    • (1977) Dev. Biol. , vol.56 , pp. 110-156
    • Sulston, J.E.1    Horvitz, H.R.2
  • 4
    • 0020858899 scopus 로고
    • The embryonic cell lineage of the nematode Caenorhabditis elegans
    • Sulston, J. E., Schierenberg, E., White, J. G., and Thomson, J. N. (1983) The embryonic cell lineage of the nematode Caenorhabditis elegans Dev. Biol. 100, 64-119 10.1016/0012-1606(83)90201-4
    • (1983) Dev. Biol. , vol.100 , pp. 64-119
    • Sulston, J.E.1    Schierenberg, E.2    White, J.G.3    Thomson, J.N.4
  • 5
    • 34347159027 scopus 로고
    • Teil Gastrulation und Mesodermbildung bei Urodelen und Anuren. Gestaltungsanalyse am Amphibienkeim mit örtlicher Vitalfärbung
    • Vogt, W. (1929) Teil Gastrulation und Mesodermbildung bei Urodelen und Anuren. Gestaltungsanalyse am Amphibienkeim mit örtlicher Vitalfärbung Dev. Genes Evol. 120, 384-706 10.1007/BF02109667
    • (1929) Dev. Genes Evol. , vol.120 , pp. 384-706
    • Vogt, W.1
  • 6
    • 0018232571 scopus 로고
    • Cell lineage analysis by intracellular injection of a tracer enzyme
    • Weisblat, D. A., Sawyer, R. T., and Stent, G. S. (1978) Cell lineage analysis by intracellular injection of a tracer enzyme Science 202, 1295-1298 10.1126/science.725606
    • (1978) Science , vol.202 , pp. 1295-1298
    • Weisblat, D.A.1    Sawyer, R.T.2    Stent, G.S.3
  • 7
    • 0018389150 scopus 로고
    • Carbocyanine dye orientation in red cell membrane studied by microscopic fluorescence polarization
    • Axelrod, D. (1979) Carbocyanine dye orientation in red cell membrane studied by microscopic fluorescence polarization Biophys. J. 26, 557-573 10.1016/S0006-3495(79)85271-6
    • (1979) Biophys. J. , vol.26 , pp. 557-573
    • Axelrod, D.1
  • 8
    • 23444431611 scopus 로고
    • Green fluorescent protein as a marker for gene expression
    • Chalfie, M., Tu, Y., Euskirchen, G., Ward, W. W., and Prasher, D. C. (1994) Green fluorescent protein as a marker for gene expression Science 263, 802-805 10.1126/science.8303295
    • (1994) Science , vol.263 , pp. 802-805
    • Chalfie, M.1    Tu, Y.2    Euskirchen, G.3    Ward, W.W.4    Prasher, D.C.5
  • 9
    • 0001347357 scopus 로고
    • Simple and efficient generation of marked clones in Drosophila
    • Harrison, D. A. and Perrimon, N. (1993) Simple and efficient generation of marked clones in Drosophila Curr. Biol. 3, 424-433 10.1016/0960-9822(93)90349-S
    • (1993) Curr. Biol. , vol.3 , pp. 424-433
    • Harrison, D.A.1    Perrimon, N.2
  • 10
    • 48649085299 scopus 로고    scopus 로고
    • Hair follicle stem cells are specified and function in early skin morphogenesis
    • Nowak, J. A., Polak, L., Pasolli, H. A., and Fuchs, E. (2008) Hair follicle stem cells are specified and function in early skin morphogenesis Cell Stem Cell 3, 33-43 10.1016/j.stem.2008.05.009
    • (2008) Cell Stem Cell , vol.3 , pp. 33-43
    • Nowak, J.A.1    Polak, L.2    Pasolli, H.A.3    Fuchs, E.4
  • 12
    • 80054719497 scopus 로고    scopus 로고
    • Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding
    • Lu, R., Neff, N. F., Quake, S. R., and Weissman, I. L. (2011) Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding Nat. Biotechnol. 29, 928-933 10.1038/nbt.1977
    • (2011) Nat. Biotechnol. , vol.29 , pp. 928-933
    • Lu, R.1    Neff, N.F.2    Quake, S.R.3    Weissman, I.L.4
  • 13
    • 84876297531 scopus 로고    scopus 로고
    • Diverse and heritable lineage imprinting of early haematopoietic progenitors
    • Naik, S. H., Perie, L., Swart, E., Gerlach, C., van Rooij, N., de Boer, R. J., and Schumacher, T. N. (2013) Diverse and heritable lineage imprinting of early haematopoietic progenitors Nature 496, 229-232 10.1038/nature12013
    • (2013) Nature , vol.496 , pp. 229-232
    • Naik, S.H.1    Perie, L.2    Swart, E.3    Gerlach, C.4    Van Rooij, N.5    De Boer, R.J.6    Schumacher, T.N.7
  • 16
    • 84950283224 scopus 로고    scopus 로고
    • The branching point in erythro-myeloid differentiation
    • Perie, L., Duffy, K. R., Kok, L., de Boer, R. J., and Schumacher, T. N. (2015) The branching point in erythro-myeloid differentiation Cell 163, 1655-1662 10.1016/j.cell.2015.11.059
    • (2015) Cell , vol.163 , pp. 1655-1662
    • Perie, L.1    Duffy, K.R.2    Kok, L.3    De Boer, R.J.4    Schumacher, T.N.5
  • 24
    • 84913594397 scopus 로고    scopus 로고
    • Genome editing. The new frontier of genome engineering with CRISPR-Cas9
    • Doudna, J. A. and Charpentier, E. (2014) Genome editing. The new frontier of genome engineering with CRISPR-Cas9 Science 346, 1258096-1258096 10.1126/science.1258096
    • (2014) Science , vol.346 , pp. 1258096
    • Doudna, J.A.1    Charpentier, E.2
  • 25
    • 84974576984 scopus 로고    scopus 로고
    • Whole organism lineage tracing by combinatorial and cumulative genome editing
    • McKenna, A., Findlay, G. M., Gagnon, J. A., Horwitz, M. S., Schier, A. F., and Shendure, J. (2016) Whole organism lineage tracing by combinatorial and cumulative genome editing Science 353, aaf7907 10.1126/science.aaf7907
    • (2016) Science , vol.353 , pp. aaf7907
    • McKenna, A.1    Findlay, G.M.2    Gagnon, J.A.3    Horwitz, M.S.4    Schier, A.F.5    Shendure, J.6
  • 26
    • 84975270845 scopus 로고    scopus 로고
    • Molecular recordings by directed CRISPR spacer acquisition
    • Shipman, S. L., Nivala, J., Macklis, J. D., and Church, G. M. (2016) Molecular recordings by directed CRISPR spacer acquisition Science 353, aaf1175 10.1126/science.aaf1175
    • (2016) Science , vol.353 , pp. aaf1175
    • Shipman, S.L.1    Nivala, J.2    Macklis, J.D.3    Church, G.M.4
  • 27
    • 85015591616 scopus 로고    scopus 로고
    • Continuous genetic recording with self-targeting CRISPR-Cas in human cells
    • Perli, S. D., Cui, C. H., and Lu, T. K. (2016) Continuous genetic recording with self-targeting CRISPR-Cas in human cells Science 353, aag0511 10.1126/science.aag0511
    • (2016) Science , vol.353 , pp. aag0511
    • Perli, S.D.1    Cui, C.H.2    Lu, T.K.3
  • 34
    • 84961242602 scopus 로고    scopus 로고
    • Multicolor cell barcoding Technology for Long-Term Surveillance of Epithelial Regeneration in Zebrafish
    • Chen, C., Puliafito, A., Cox, B. D., Primo, L., Fang, Y., Di Talia, S., and Poss, K. D. (2016) Multicolor cell barcoding Technology for Long-Term Surveillance of Epithelial Regeneration in Zebrafish Dev. Cell 36, 668-680 10.1016/j.devcel.2016.02.017
    • (2016) Dev. Cell , vol.36 , pp. 668-680
    • Chen, C.1    Puliafito, A.2    Cox, B.D.3    Primo, L.4    Fang, Y.5    Di Talia, S.6    Poss, K.D.7
  • 35
    • 84954383317 scopus 로고    scopus 로고
    • Cell lineage tracing in human epithelial tissues using mitochondrial DNA mutations as clonal markers
    • Walther, V. and Alison, M. R. (2016) Cell lineage tracing in human epithelial tissues using mitochondrial DNA mutations as clonal markers Wiley Interdiscip Rev. Dev Biol. 5, 103-117 10.1002/wdev.203
    • (2016) Wiley Interdiscip Rev. Dev Biol. , vol.5 , pp. 103-117
    • Walther, V.1    Alison, M.R.2
  • 37
    • 84871519181 scopus 로고    scopus 로고
    • TALENs: A widely applicable technology for targeted genome editing
    • Joung, J. K. and Sander, J. D. (2013) TALENs: a widely applicable technology for targeted genome editing Nat. Rev. Mol. Cell Biol. 14, 49-55 10.1038/nrm3486
    • (2013) Nat. Rev. Mol. Cell Biol. , vol.14 , pp. 49-55
    • Joung, J.K.1    Sander, J.D.2
  • 38
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • Brenner, S. (1974) The genetics of Caenorhabditis elegans Genetics 77, 71-94
    • (1974) Genetics , vol.77 , pp. 71-94
    • Brenner, S.1
  • 39
    • 84884911076 scopus 로고    scopus 로고
    • Heritable gene knockout in Caenorhabditis elegans by direct injection of Cas9-sgRNA ribonucleoproteins
    • Cho, S. W., Lee, J., Carroll, D., Kim, J., and Lee, J. (2013) Heritable gene knockout in Caenorhabditis elegans by direct injection of Cas9-sgRNA ribonucleoproteins Genetics 195, 1177-1180 10.1534/genetics.113.155853
    • (2013) Genetics , vol.195 , pp. 1177-1180
    • Cho, S.W.1    Lee, J.2    Carroll, D.3    Kim, J.4    Lee, J.5
  • 41
    • 80054913451 scopus 로고    scopus 로고
    • FLASH: Fast length adjustment of short reads to improve genome assemblies
    • Magoc, T. and Salzberg, S. L. (2011) FLASH: fast length adjustment of short reads to improve genome assemblies Bioinformatics 27, 2957-2963 10.1093/bioinformatics/btr507
    • (2011) Bioinformatics , vol.27 , pp. 2957-2963
    • Magoc, T.1    Salzberg, S.L.2
  • 43
    • 79951548848 scopus 로고    scopus 로고
    • Phangorn: Phylogenetic analysis in R
    • Schliep, K. P. (2011) phangorn: phylogenetic analysis in R Bioinformatics 27, 592-593 10.1093/bioinformatics/btq706
    • (2011) Bioinformatics , vol.27 , pp. 592-593
    • Schliep, K.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.