-
1
-
-
0034578465
-
Gene family evolution and homology: genomics meets phylogenetics
-
Thornton,J.W. and DeSalle,R. (2000) Gene family evolution and homology: genomics meets phylogenetics. Annu. Rev. Genomics Hum. Genet., 1, 41-73.
-
(2000)
Annu. Rev. Genomics Hum. Genet
, vol.1
, pp. 41-73
-
-
Thornton, J.W.1
DeSalle, R.2
-
2
-
-
21044445996
-
Phylogeny and evolution of the major intrinsic protein family
-
Zardoya,R. (2005) Phylogeny and evolution of the major intrinsic protein family. Biol. Cell, 97, 397-414.
-
(2005)
Biol. Cell
, vol.97
, pp. 397-414
-
-
Zardoya, R.1
-
3
-
-
4444353678
-
Phylogenetic reconstruction and lateral gene transfer
-
Bapteste,E., Boucher,Y., Leigh,J. and Doolittle,W.F. (2004) Phylogenetic reconstruction and lateral gene transfer. Trends Microbiol., 12, 406-411.
-
(2004)
Trends Microbiol
, vol.12
, pp. 406-411
-
-
Bapteste, E.1
Boucher, Y.2
Leigh, J.3
Doolittle, W.F.4
-
4
-
-
84874673466
-
Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote
-
Schonknecht,G., Chen,W.H., Ternes,C.M., Barbier,G.G., Shrestha,R.P., Stanke,M., Brautigam,A., Baker,B.J., Banfield,J.F., Garavito,R.M. et al. (2013) Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science, 339, 1207-1210.
-
(2013)
Science
, vol.339
, pp. 1207-1210
-
-
Schonknecht, G.1
Chen, W.H.2
Ternes, C.M.3
Barbier, G.G.4
Shrestha, R.P.5
Stanke, M.6
Brautigam, A.7
Baker, B.J.8
Banfield, J.F.9
Garavito, R.M.10
-
5
-
-
76749100709
-
ETE: a python Environment for Tree Exploration
-
Huerta-Cepas,J., Dopazo,J. and Gabaldon,T. (2010) ETE: a python Environment for Tree Exploration. BMC Bioinformatics, 11, 24.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 24
-
-
Huerta-Cepas, J.1
Dopazo, J.2
Gabaldon, T.3
-
6
-
-
54049083387
-
Visualizing phylogenetic trees using TreeView
-
Chapter 6, Unit 6.2
-
Page,R.D. (2002) Visualizing phylogenetic trees using TreeView. Curr. Protoc. Bioinformatics, Chapter 6, Unit 6.2.
-
(2002)
Curr. Protoc. Bioinformatics
-
-
Page, R.D.1
-
7
-
-
77952540430
-
TreeVector: scalable, interactive, phylogenetic trees for the web
-
Pethica,R., Barker,G., Kovacs,T. and Gough,J. (2010) TreeVector: scalable, interactive, phylogenetic trees for the web. PLoS One, 5, e8934.
-
(2010)
PLoS One
, vol.5
, pp. e8934
-
-
Pethica, R.1
Barker, G.2
Kovacs, T.3
Gough, J.4
-
8
-
-
84868007353
-
Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks
-
Huson,D.H. and Scornavacca,C. (2012) Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks. Syst. Biol., 61, 1061-1067.
-
(2012)
Syst. Biol
, vol.61
, pp. 1061-1067
-
-
Huson, D.H.1
Scornavacca, C.2
-
9
-
-
79960004119
-
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
-
Letunic,I. and Bork,P. (2011) Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res., 39, W475-W478.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W475-W478
-
-
Letunic, I.1
Bork, P.2
-
10
-
-
77957931761
-
jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web
-
Smits,S.A. and Ouverney,C.C. (2010) jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web. PLoS One, 5, e12267.
-
(2010)
PLoS One
, vol.5
, pp. e12267
-
-
Smits, S.A.1
Ouverney, C.C.2
-
11
-
-
47049086792
-
PhyloWidget: web-based visualizations for the tree of life
-
Jordan,G.E. and Piel,W.H. (2008) PhyloWidget: web-based visualizations for the tree of life. Bioinformatics, 24, 1641-1642.
-
(2008)
Bioinformatics
, vol.24
, pp. 1641-1642
-
-
Jordan, G.E.1
Piel, W.H.2
-
12
-
-
84864489995
-
T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks
-
Boc,A., Diallo,A.B. and Makarenkov,V. (2012) T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks. Nucleic Acids Res., 40, W573-W579.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. W573-W579
-
-
Boc, A.1
Diallo, A.B.2
Makarenkov, V.3
-
13
-
-
84957938576
-
Treelink: data integration, clustering and visualization of phylogenetic trees
-
Allende,C., Sohn,E. and Little,C. (2015) Treelink: data integration, clustering and visualization of phylogenetic trees. BMC Bioinformatics, 16, 414.
-
(2015)
BMC Bioinformatics
, vol.16
, pp. 414
-
-
Allende, C.1
Sohn, E.2
Little, C.3
-
14
-
-
75149150388
-
TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses
-
Stover,B.C. and Muller,K.F. (2010) TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses. BMC Bioinformatics, 11, 7.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 7
-
-
Stover, B.C.1
Muller, K.F.2
-
15
-
-
84979518161
-
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
-
Pavlopoulos,G.A., Malliarakis,D., Papanikolaou,N., Theodosiou,T., Enright,A.J. and Iliopoulos,I. (2015) Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future. Gigascience, 4, 38.
-
(2015)
Gigascience
, vol.4
, pp. 38
-
-
Pavlopoulos, G.A.1
Malliarakis, D.2
Papanikolaou, N.3
Theodosiou, T.4
Enright, A.J.5
Iliopoulos, I.6
-
16
-
-
84864462812
-
EvolView, an online tool for visualizing, annotating and managing phylogenetic trees
-
Zhang,H., Gao,S., Lercher,M.J., Hu,S. and Chen,W.H. (2012) EvolView, an online tool for visualizing, annotating and managing phylogenetic trees. Nucleic Acids Res., 40, W569-W572.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. W569-W572
-
-
Zhang, H.1
Gao, S.2
Lercher, M.J.3
Hu, S.4
Chen, W.H.5
-
17
-
-
84897417984
-
Pathogens and host immunity in the ancient human oral cavity
-
Warinner,C., Rodrigues,J.F., Vyas,R., Trachsel,C., Shved,N., Grossmann,J., Radini,A., Hancock,Y., Tito,R.Y., Fiddyment,S. et al. (2014) Pathogens and host immunity in the ancient human oral cavity. Nat. Genet., 46, 336-344.
-
(2014)
Nat. Genet
, vol.46
, pp. 336-344
-
-
Warinner, C.1
Rodrigues, J.F.2
Vyas, R.3
Trachsel, C.4
Shved, N.5
Grossmann, J.6
Radini, A.7
Hancock, Y.8
Tito, R.Y.9
Fiddyment, S.10
-
18
-
-
84942930536
-
A high through-put platform for recombinant antibodies to folded proteins
-
Hornsby,M., Paduch,M., Miersch,S., Saaf,A., Matsuguchi,T., Lee,B., Wypisniak,K., Doak,A., King,D., Usatyuk,S. et al. (2015) A high through-put platform for recombinant antibodies to folded proteins. Mol. Cell. Proteomics, 14, 2833-2847.
-
(2015)
Mol. Cell. Proteomics
, vol.14
, pp. 2833-2847
-
-
Hornsby, M.1
Paduch, M.2
Miersch, S.3
Saaf, A.4
Matsuguchi, T.5
Lee, B.6
Wypisniak, K.7
Doak, A.8
King, D.9
Usatyuk, S.10
-
19
-
-
84979866930
-
Nuclear genomic signals of the'microturbellarian' roots of platyhelminth evolutionary innovation
-
Laumer,C.E., Hejnol,A. and Giribet,G. (2015) Nuclear genomic signals of the'microturbellarian' roots of platyhelminth evolutionary innovation. Elife, 4, e05503.
-
(2015)
Elife
, vol.4
, pp. e05503
-
-
Laumer, C.E.1
Hejnol, A.2
Giribet, G.3
-
20
-
-
84925534859
-
Human anelloviruses: an update of molecular, epidemiological and clinical aspects
-
Spandole,S., Cimponeriu,D., Berca,L.M. and Mihaescu,G. (2015) Human anelloviruses: an update of molecular, epidemiological and clinical aspects. Arch. Virol., 160, 893-908.
-
(2015)
Arch. Virol
, vol.160
, pp. 893-908
-
-
Spandole, S.1
Cimponeriu, D.2
Berca, L.M.3
Mihaescu, G.4
-
21
-
-
84965074527
-
Integration of multi-omics data of a genome-reduced bacterium: prevalence of post-transcriptional regulation and its correlation with protein abundances
-
Chen,W.H., van Noort,V., Lluch-Senar,M., Hennrich,M.L., JA,H.W., Yus,E., Alibes,A., Roma,G., Mende,D.R., Pesavento,C. et al. (2016) Integration of multi-omics data of a genome-reduced bacterium: prevalence of post-transcriptional regulation and its correlation with protein abundances. Nucleic Acids Res., 44, 1192-1202.
-
(2016)
Nucleic Acids Res
, vol.44
, pp. 1192-1202
-
-
Chen, W.H.1
van Noort, V.2
Lluch-Senar, M.3
Hennrich, M.L.4
JA, H.W.5
Yus, E.6
Alibes, A.7
Roma, G.8
Mende, D.R.9
Pesavento, C.10
-
22
-
-
84902986168
-
Dissecting vancomycin-intermediate resistance in staphylococcus aureus using genome-wide association
-
Alam,M.T., Petit,R.A. 3rd, Crispell,E.K., Thornton,T.A., Conneely,K.N., Jiang,Y., Satola,S.W. and Read,T.D. (2014) Dissecting vancomycin-intermediate resistance in staphylococcus aureus using genome-wide association. Genome Biol. Evol., 6, 1174-1185.
-
(2014)
Genome Biol. Evol
, vol.6
, pp. 1174-1185
-
-
Alam, M.T.1
Petit, R.A.2
Crispell, E.K.3
Thornton, T.A.4
Conneely, K.N.5
Jiang, Y.6
Satola, S.W.7
Read, T.D.8
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