jsPhyloSVG: A javascript library for visualizing interactive and vector-based phylogenetic trees on the web

PLoS ONE

Volumn 5, Issue 8, 2010, Pages

  Smits, Samuel A ^a   Ouverney, Cleber C ^a  

^a SAN JOSE STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; COMPUTER PROGRAM; DATA MINING; INTERNET; MARKUP LANGUAGE; PHYLOGENETIC TREE; WEB BROWSER; COMPUTER GRAPHICS; PHYLOGENY;

COMPUTER GRAPHICS; INTERNET; PHYLOGENY; SOFTWARE;

EID: 77957931761     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0012267     Document Type: Article

References (14)

1. Felsenstein J (1989) PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5: 166, 164.
2. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol 24: 1596-1599. doi:10.1093/molbev/msm092.
3. Page RDM (2002) Visualizing phylogenetic trees using TreeView. Curr Protoc Bioinformatics Chapter 6: Unit 6.2. doi:10.1002/0471250953.bi0602s01.
4. Zmasek CM, Eddy SR (2001) ATV: display and manipulation of annotated phylogenetic trees. Bioinformatics 17: 383-384. doi:10.1093/bioinformatics/17.4.383.
5. Letunic I, Bork P (2007) Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23: 127-128. doi:10.1093/bioinformatics/btl529.
6. Jordan GE, Piel WH (2008) PhyloWidget: web-based visualizations for the tree of life. Bioinformatics 24: 1641-1642. doi:10.1093/bioinformatics/btn235.
7. Palidwor G, Reynaud E, Andrade-Navarro M (2006) Taxonomic colouring of phylogenetic trees of protein sequences. BMC Bioinformatics 7: 79. doi:10.1186/1471-2105-7-79.
8. Pethica R, Barker G, Kovacs T, Gough J (2010) TreeVector: Scalable, Interactive, Phylogenetic Trees for the Web. PLoS ONE 5: e8934. doi:10.1371/journal.pone.0008934.
9. jQuery: The Write Less, Do More, JavaScript Library (n.d.). Available: http://jquery.com/. Accessed 7 May 2010.
10. YUI 3 - Yahoo! User Interface Library (n.d.). Available: http://developer.yahoo.com/yui/3/. Accessed 7 May 2010.
11. Han M, Zmasek C (2009) phyloXML: XML for evolutionary biology and comparative genomics. BMC Bioinformatics 10: 356. doi:10.1186/1471-2105-10-356.
12. Public Library of Science (n.d.). Available: http://www.plos.org/. Accessed 5 May 2010.
13. BioMed Central The Open Access Publisher (n.d.). Available: http://www.biomedcentral.com/. Accessed 16 May 2010.
14. PubMed (n.d.). Available: http://www.ncbi.nlm.nih.gov/pubmed/. Accessed 5 May 2010.