Paper-based device with on-chip reagent storage for rapid extraction of DNA from biological samples

Microchimica Acta

Volumn 184, Issue 7, 2017, Pages 2141-2150

  Tang, Ruihua ^a,b   Yang, Hui ^a   Choi, Jane Ru ^b   Gong, Yan ^b   Hu, Jie ^b   Wen, Ting ^c   Li, XiuJun ^d   Xu, Bo ^b   Mei, Qibing ^a   Xu, Feng ^b  

^a NORTHWESTERN POLYTECHNICAL UNIVERSITY   (China)

^b XI'AN JIAOTONG UNIVERSITY   (China)

^c Xi an Diandi Biotech Company   (China)

^d UNIVERSITY OF TEXAS AT EL PASO   (United States)

Author keywords

Bacteria; MCF7 cell; Nucleic acid extraction; Point of care testing; Saliva; Serum; Sputum; Whole blood

Indexed keywords

EID: 85017163877     PISSN: 00263672     EISSN: 14365073     Source Type: Journal    
DOI: 10.1007/s00604-017-2225-0     Document Type: Article

References (31)

1. Roewer L (2013) DNA fingerprinting in forensics_ past, present, future. Investig Genet 4:22–32. doi:10.1186/2041-2223-4-22
2. Petras ML, Lefferts JAWB, Suriawinata AA, Tsongalis GJ (2011) KRAS detection in colonic tumors by DNA extraction from FTA paper: the molecular touch-prep. Diagnostic Molecular Pathology: The American Journal of Surgical Pathology, Part B 20(4):189–193. doi:10.1097/PDM.0b013e318211d554
3. Thomsen PFKJ, Iversen LL, Wiuf C, Rasmussen M, Gilbert MT, Orlando L, Willerslev E (2012) Monitoring endangered freshwater biodiversity using environmental DNA. Mol Ecol 21(11):2565–2573. doi:10.1111/j.1365-294X.2011.05418.x
4. Gruentzig AWKC, Sharon A, Jeff B, Chatterjee A, Sauer-Budge AF (2011) A new DNA extraction method for automated food analysis. Anal Methods 3(7):1507. doi:10.1039/c0ay00701c
5. Tang R, Yang H, Choi JR, Gong Y, Hu J, Feng S, Pingguan-Murphy B, Mei Q, Xu F (2016) Improved sensitivity of lateral flow assay using paper-based sample concentration technique. Talanta 152:269–276. doi:10.1016/j.talanta.2016.02.017
6. Choi JR, Hu J, Tang R, Gong Y, Feng S, Ren H, Wen T, Li X, Wan Abas WA, Pingguan-Murphy B, Xu F (2016) An integrated paper-based sample-to-answer biosensor for nucleic acid testing at the point of care. Lab Chip 16(3):611–621. doi:10.1039/c5lc01388g
7. Choi JR, Hu J, Feng S, Wan Abas WA, Pingguan-Murphy B, Xu F (2016) Sensitive biomolecule detection in lateral flow assay with a portable temperature-humidity control device. Biosens Bioelectron 79:98–107. doi:10.1016/j.bios.2015.12.005
8. Tang RH, Yang H, Choi JR, Gong Y, Feng SS, Pingguan-Murphy B, Huang QS, Shi JL, Mei QB, Xu F (2016) Advances in paper-based sample pretreatment for point-of-care testing. Crit Rev Biotechnol 1–18. doi:10.3109/07388551.2016.1164664
9. Alireza Javadi MS, Leila, Mohammadi Ziazi MP, Atosa Dorudinia SM, Seyedmehdi SK (2014) Qualification study of two genomic DNA extraction methods in different clinical samples. Tanaffos 13(4):41–47
10. Poh JJ, Gan SK (2014) Comparison of customized spin-column and salt-precipitation finger-prick blood DNA extraction. Biosci Rep 34(5):629–634. doi:10.1042/BSR20140105
11. Sirdah MM (2014) Superparamagnetic-bead based method: an effective DNA extraction from dried blood spots (DBS) for diagnostic PCR. J Clin Diagn Res: JCDR 8(4):FC01–FC04. doi:10.7860/JCDR/2014/8171.4226
12. Choi JRTR, Wang SQ, Wan Abas WA, Pingguan-Murphy B, Xu F (2015) Paper-based sample-to-answer molecular diagnostic platform for point-of-care diagnostics. Biosens Bioelectron 74:427–439. doi:10.1016/j.bios.2015.06.065
13. Hu J, Wang S, Wang L, Li F, Pingguan-Murphy B, Lu TJ, Xu F (2014) Advances in paper-based point-of-care diagnostics. Biosens Bioelectron 54:585–597. doi:10.1016/j.bios.2013.10.075
14. Xu Y, Liu M, Kong N, Liu J (2016) Lab-on-paper micro- and nano-analytical devices: fabrication, modification, detection and emerging applications. Microchim Acta 183(5):1521–1542. doi:10.1007/s00604-016-1841-4
15. Wolfgramm Ede V, de Carvalho FM, Aguiar VR, Sartori MP, Hirschfeld-Campolongo GC, Tsutsumida WM, Louro ID (2009) Simplified buccal DNA extraction with FTA elute cards. Forensic Sci Int Genet 3(2):125–127. doi:10.1016/j.fsigen.2008.11.008
16. McFall SM, Wagner RL, Jangam SR, Yamada DH, Hardie D, Kelso DM (2015) A simple and rapid DNA extraction method from whole blood for highly sensitive detection and quantitation of HIV-1 proviral DNA by real-time PCR. J Virol Methods 214:37–42. doi:10.1016/j.jviromet.2015.01.005
17. Wupeng Gan BZ, Zhang P, Han J, Lid C-X, Liu P (2014) A filter paper-based microdevice for low-cost rapid, and automated DNA extraction and amplification from diverse sample types. Lab Chip 14:3719–3728. doi:10.1039/C4LC00686K
18. Govindarajan AVRS, Vigil GD, Yager P, Bohringer KF (2012) A low cost point-of-care viscous sample preparation device for molecular diagnosis in the developing world; an example of microfluidic origami. Lab Chip 12(1):174–181. doi:10.1039/c1lc20622b
19. Alidjinou EK, Ebatetou-Ataboho E, Sané F, Moukassa D, Dewilde A, Hober D (2013) Cervical samples dried on filter paper and dried vaginal tampons can be useful to investigate the circulation of high-risk HPV in Congo. J Clin Virol 57(2):161–164. doi:10.1016/j.jcv.2013.02.010
20. Hyeran Noh STP (2010) Fluidic timers for time-dependent, point-of-care assays on paper. Anal Chem 82:8071–8078. doi:10.1021/ac1005537
21. Jangam SR, Yamada DH, McFall SM, DM K (2009) Rapid, point-of-care extraction of human immunodeficiency virus type 1 proviral DNA from whole blood for detection by real-time PCR. J Clin Microbiol 47(8):2363–2368. doi:10.1128/JCM.r00092-09
22. Rui Gong SL (2014) Extraction of human genomic DNA from whole blood using a magnetic microsphere method. Int J Nanomedicine 9:3781–3789. doi:10.2147/IJN.S59545
23. de Man RA, Pas SD, Fries E, HGM N, Osterhaus ADME (2000) Development of a quantitative real-time detection assay for hepatitis B virus DNA and Comparison with two commercial assays. J Clin Microbiol 38:2897–2901
24. Esser K-H, Marx WH, Lisowsky T (2006) maxXbond: first regeneration system for DNA binding silica matrices. Nat methods 3(1). doi:10.1038/nmeth845
25. Zhanguo Xin JPV, Oliver MJ, Burke JJ (2003) High-throughput DNA extraction method suitable for PCR. BioTechniques 34:820–826
26. Al-Soud WA, Radstrom P (2001) Purification and characterization of PCR-inhibitory components in blood cells. J Clin Microbiol 39(2):485–493. doi:10.1128/JCM.39.2.485-493.2001
27. Queipo-Ortuno MI, Tena F, Colmenero JD, Morata P (2008) Comparison of seven commercial DNA extraction kits for the recovery of Brucella DNA from spiked human serum samples using real-time PCR. European Journal of Clinical Microbiology & Infectious Diseases: Official Publication of the European Society of Clinical Microbiology 27(2):109–114. doi:10.1007/s10096-007-0409-y
28. Yeung SW, Hsing IM (2006) Manipulation and extraction of genomic DNA from cell lysate by functionalized magnetic particles for lab on a chip applications. Biosens Bioelectron 21(7):989–997. doi:10.1016/j.bios.2005.03.008
29. Wang C-H, Lien K-Y, Wu J-J, Lee G-B (2011) A magnetic bead-based assay for the rapid detection of methicillin-resistant Staphylococcus aureus by using a microfluidic system with integrated loop-mediated isothermal amplification. Lab Chip 11(8):1521. doi:10.1039/c0lc00430h
30. Lee J-G, Cheong KH, Huh N, Kim S, Choi J-W, Ko C (2006) Microchip-based one step DNA extraction and real-time PCR in one chamber for rapid pathogen identification. Lab Chip 6(7):886. doi:10.1039/b515876a
31. Becker H, Maleki T, Gray BL, Fricke T, Quesenberry JT, Todd P, Leary JF (2012) Point-of-care, portable microfluidic blood analyzer system. Proc SPIE 8251:82510C–882511. doi:10.1117/12.909051